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This concise yet comprehensive text surveys the field of bacterial metabolism in terms useful to students and researchers. Emphasis is on those metabolic reactions occurring only in bacteria. Thus, the book describes in detail the energy metabolism of the various groups of bacteria. In addition, it examines pathways used by bacteria for the degradation of organic compounds, the synthesis of cellular constituents, the regulation of bacterial metabolism and the fixation of molecular nitrogen.
Bacterial Metabolism focuses on metabolic events that occur in microorganisms, as well as photosynthesis, oxidation, polysaccharide formation, and homofermentation. The book first discusses the thermodynamics of biological reactions, photosynthesis and photometabolism, and chemosynthesis. Free energy, photosynthesis, enzymes, and terminology in bacterial metabolism are elaborated. The manuscript then examines acetic acid bacteria and lactic acid bacteria. Discussions focus on lactate, ethanol, glucose, and glycerol metabolism, glycol oxidation, homofermentation, polysaccharide formation, and electron transport systems. The publication takes a look at pseudomonadaceae and nitrogen metabolism as an energy source for anaerobic microorganisms. Topics include metabolism of pairs of amino acids, single amino acid metabolism, oxidation of glycolate and malonate, and oxygenases. The book is a dependable source of information for readers interested in bacterial metabolism.
This book has been written for students who are taking a course in bacterial metabolism. I hope, however, that scholars will also find it useful either as a help in teaching bacterial metabolism or as a review on the special aspects of metabolism in bacteria. The concept of this book results from my experience in teaching bacterial metabolism. In the first chapters the principal reactions of the energy and biosynthetic metabolism have been discussed using Escherichia coli as a model organism. Then the diversity of aerobic metabolism has been out lined. Following a brief description of the regulation of the level and the activity of enzymes in bacteria the characteristic features of fermentative, chemolithotrophic and phototrophic metabolism have been discussed. Finally, the last chapter has been devoted to nitrogen fixation. Throughout the text I have tried not only to describe metabolic pathways and enzyme reactions but also to elucidate the physiology of the microorganisms which carry out all these metabolic reactions. Two comments regarding the formulas used in this book are necessary.
The first publication of this book may be said to have marked the formal institution of the study of the biochemistry of bacteria as individual, isolated organisms, and its subsequent editions have reviewed the progress in this area. Bacterial Metabolism is, in effect, Marjory Stephenson's lifelong record book of her results: first issued in 1929, it was fully updated for the second edition of 1939, and again for the present edition which first appeared in 1949.
Bacterial Cellular Metabolic Systems by K. Shimizu Pdf
The metabolic regulation of a cell system is of critical importance in systems biology, and a robust model of these mechanisms is essential in predicting the effects on the metabolism of both the culture environment and the knockout of specific genes. Bacterial cellular metabolic systems focuses on this highly topical subject in relation to culture environment and provides a detailed analysis from gene level to metabolic level regulation, as well as offering a discussion of the most recent modelling approaches. The book begins with an introduction to metabolic mechanisms and to the metabolic regulation of a cell, before moving on to discussing the action of global regulators in response to a specific culture environment. The second half of the book examines conventional flux balance analysis and its applications, 13C-metabolic flux analysis, and the effect of a specific gene knockout on the metabolism. Comprehensive account of metabolic regulation via global regulators in response to changes in the culture environment Basic formulation of 13C-metabolic flux analysis based on 13C-labelling experiments Systems biology approach for the modelling and computer simulation of the main metabolic pathways of a cell system
Bacterial Physiology and Metabolism by J. R. Sokatch Pdf
Bacterial Physiology and Metabolism focuses on research on bacteria, as well as metabolism of carbohydrates, fermentation, and oxidation of acids. The book first offers information on nutrition and growth of bacterial cultures, including requirements for growth, nutritional classification of bacteria, measurement of bacterial growth, and synchronous growth of bacterial cultures. The manuscript then considers the chemical composition of bacteria, oligosaccharide catabolism, and transport of sugars. The publication takes a look at the fermentation of sugars and aerobic metabolism of carbohydrates. Discussions focus on Embden-Meyerhof fermentations, miscellaneous pathways, and hexose, pentose, polyol, and hexuronic acid oxidation. The text also elaborates on oxidation of organic acids, electron transport, oxidation of hydrocarbons, and protein and amino acid catabolism. The text is a dependable reference for readers interested in bacterial physiology and metabolism.
Bacterial Physiology and Metabolism by Byung Hong Kim,Geoffrey Michael Gadd Pdf
Recent determination of genome sequences for a wide range of bacteria has made in-depth knowledge of prokaryotic metabolic function essential in order to give biochemical, physiological, and ecological meaning to the genomic information. Clearly describing the important metabolic processes that occur in prokaryotes under different conditions and in different environments, this advanced text provides an overview of the key cellular processes that determine bacterial roles in the environment, biotechnology, and human health. Prokaryotic structure is described as well as the means by which nutrients are transported into cells across membranes. Glucose metabolism through glycolysis and the TCA cycle are discussed, as well as other trophic variations found in prokaryotes, including the use of organic compounds, anaerobic fermentation, anaerobic respiratory processes, and photosynthesis. The regulation of metabolism through control of gene expression and control of the activity of enzymes is also covered, as well as survival mechanisms used under starvation conditions.
Fundamentals of Bacterial Physiology and Metabolism by Rani Gupta,Namita Gupta Pdf
This book provides useful information on microbial physiology and metabolism. The key aspects covered are prokaryotic diversity, growth physiology, basic metabolic pathways and their regulation, metabolic diversity with details of various unique pathways. Another focus area is stress physiology with details on varying environmental stresses, signal transduction, adaptation and survival. For instructional purposes, the book provides case studies, interesting facts, techniques etc. which help in showcasing the inter-disciplinary nature and bridge the gap between various aspects of applied microbiology.
Metabolism and Bacterial Pathogenesis by Tyrrell Conway,Paul S. Cohen Pdf
Groundbreaking thinking on how bacterial metabolism is foundational to pathogenesis For too long, bacterial metabolism and bacterial pathogenesis have been studied as separate entities. However, the scientific community is beginning to realize that not only are bacterial nutrient acquisition and utilization essential for pathogenesis, but that interfering with the pathogen-specific metabolic pathways used during infection can regulate virulence factor expression and might lead to effective breakthroughs in a variety of treatments. Editors Paul Cohen and Tyrrell Conway, who pioneered the use of metabolic mutants in competitive colonization assays, an approach now widely used to investigate the nutrition of pathogens in vivo, are uniquely qualified to advance our knowledge of this integrative field of research. They convened a group of contributors who are breaking new ground in understanding how bacterial metabolism is foundational to pathogenesis to share their expert perspectives and outlook for the future. Beginning with overviews, Metabolism and Bacterial Pathogenesis covers a wide range of diseases and both Gram-positive and -negative bacteria that serve as model systems for in vitro and in vivo investigations intracellular, respiratory, and enteric pathogens pathogen-specific nutrient acquisition in hosts mechanisms of host-driven metabolic adaptation by pathogens metabolic regulation of virulence gene expression Useful for specialists in bacterial pathogenesis and specialists in metabolism as well as molecular biologists, physicians, veterinarians, dentists, graduate and undergraduate students, and laboratory technicians, Metabolism and Bacterial Pathogenesis is also essential reading for scientists studying the microbiome.
Bacterial Biogeochemistry by Tom Fenchel,Gary M. King,Henry Blackburn Pdf
Bacterial Biogeochemistry, Second Edition focuses on bacterial metabolism and its relevance to the environment, including the decomposition of soil, food chains, nitrogen fixation, assimilation and reduction of carbon nitrogen and sulfur, and microbial symbiosis. The scope of the new edition has broadened to provide a historical perspective, and covers in greater depth topics such as bioenergetic processes, characteristics of microbial communities, spacial heterogeneity, transport mechanisms, microbial biofilms, extreme environments and evolution of biogeochemical cycles. Key Features * Provides up-to-date coverage with an enlarged scope, a new historical perspective, and coverage in greater depth of topics of special interest * Covers interactions between microbial processes, atmospheric composition and the earth's greenhouse properties * Completely rewritten to incorporate all the advances and discoveries of the last 20 years
Bacterial Metabolism focuses on metabolic events that occur in microorganisms, as well as photosynthesis, oxidation, polysaccharide formation, and homofermentation. The book first discusses the thermodynamics of biological reactions, photosynthesis and photometabolism, and chemosynthesis. Free energy, photosynthesis, enzymes, and terminology in bacterial metabolism are elaborated. The manuscript then examines acetic acid bacteria and lactic acid bacteria. Discussions focus on lactate, ethanol, glucose, and glycerol metabolism, glycol oxidation, homofermentation, polysaccharide formation, and ...
The Molecular Basis of Bacterial Metabolism by Günter Hauska,Rudolf K. Thauer Pdf
The present volume contains 17 lectures of the 41 st Mosbach Colloquium of the Gesellschaft fiir Biologische Chemie, held from April 5-7, 1990 on the topic "The Molecular Basis of Bacterial Metabolism". From the beginning it was not the intention of the organizers to present a comprehensive account, but rather to select new, exciting progress on sometimes exotic reactions of specifically bacterial, mainly anaerobic metabolism. Members of our society had contributed to this progress to an extent that greatly stimulated the scientific exchange with international colleagues during the days in Mosbach. The editors hope that this stimulation will be conveyed to the readers of the articles, which reach from the biochemistry of methanogenesis, via anaerobic radical reactions, metal biochemistry in hydrogen and nitrogen metabolism, conversions of light - and redox energy, to the regulation of metabolic adaptation, and the attempts to bioengineer novel pathways for the degradation of xenobiotica. We believe that the book represents a highly progressive field of over lapping disciplines, comprising microbiology and molecular genetics, chemistry of biomimetic interest, and biophysics, and that it gives insight into the impact modern technologies have on microbiological research today. The colloquium was generously supported by the Deutsche Forschungsgemeinschaft, the Paul-Martini-Stiftung, and the Fonds fiir Biologische Chemie. A. Trebst, G. Schafer, and D. Oesterhelt were a great help in preparing the program and we wish to thank them for their advice.
Microbial Metabolism In The Digestive Tract by M. J. Hill Pdf
In this book an attempt has been made to give an update on the flora of the human digestive tract and its role in disease. This is a subject that has implications in many disciplines and therefore is aimed at not only microbiologists, but also clinicians, dentists, medical researchers, biochemists, and toxicologists who have a background knowledge of bacteriology but are not necessarily directly involved in research into the metabolic actions of gut bacteria.
Bacterial Metabolism by Stephanie M. Amato,Di Sun Pdf
Metabolism refers to all the biochemical reactions that take place in a cell or organism. The study of bacterial metabolism focuses on the chemical diversity of substrate oxidations and dissimilation reactions, which normally function in bacteria to generate energy. The role of metabolism in the bacterial response to antibiotics has recently garnered interest because of a rapid rise in antibiotic resistance, a clear link between metabolic function and cell viability, and the lack of novel targets for hard-to-treat infections. Also within the scope of bacterial metabolism is the study of the uptake and utilization of the inorganic or organic compounds required for growth and maintenance of a cellular steady state (assimilation reactions). Genome-scale metabolic models bridge the gap between genome-derived biochemical information and metabolic phenotypes in a principled manner, providing a solid interpretative framework for experimental data related to metabolic states, and enabling simple in silico experiments with whole-cell metabolism.This book entitled "Bacterial Metabolism" presents cutting-edge research and reviews on how bacterial and archaeal structure lead to function, how metabolic processes are regulated, how microbes respond to environmental stressors, and how microbes can be manipulated to enhance their growth or the production of desired products. It also summarises the current knowledge of the bacterial isolates capable of anaerobic mineralization of hydrocarbons, and of the biochemistry and molecular biology of enzymes involved in the catabolic pathways of some of these substrates. Several alkylbenzenes, alkanes or alkenes are anaerobically utilized as substrates by several species of denitrifying, ferric iron-reducing and sulfate-reducing bacteria. The book will be of valued for students, researchers as well as for practitioners dealing with the subject.
The Bacteria: A Treatise on Structure and Function, Volume II: Metabolism deals with the gross metabolism of microorganisms in energy liberating reactions and pathways. The book investigates energy-yielding metabolism in bacteria; fermentation; terminal oxidation and its cyclic mechanisms; electron transport; and bacterial photosynthesis and luminescence. This volume is organized into 11 chapters and begins with a discussion of problems of energy metabolism that apply to all cells and unicellular organisms. The book also explains the biologically available energy released by glycolysis, oxidation, and light to chemical bond transformation and its quantitative relationships to whole cell requirements. The reader is then introduced to the fermentation of carbohydrates and related compounds, particularly the pathways of carbon and the role of hydrogen acceptors in fermentation, along with the decomposition of nitrogenous compounds such as amino acids, purines, and pyrimidines. The remaining chapters focus on the cyclic mechanisms for the synthesis of cellular components and for the yield of energy by oxidation. The breakdown of high molecular weight substances such as polysaccharides and bacterial cell walls is also explained. The chapters discuss as well the mechanisms of electron transport in microbes. The book concludes by exploring the physiological aspects of bacterial luminescence as well as the taxonomy and evolution of luminous bacteria. This book is a valuable resource for biochemists, microbiologists, bacteriologists, investigators, and students interested in the metabolic processes affecting bacteria.
