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Bayesian Networks by Marco Scutari,Jean-Baptiste Denis Pdf
Explains the material step-by-step starting from meaningful examples Steps detailed with R code in the spirit of reproducible research Real world data analyses from a Science paper reproduced and explained in detail Examples span a variety of fields across social and life sciences Overview of available software in and outside R
Bayesian Networks by Marco Scutari,Jean-Baptiste Denis Pdf
Understand the Foundations of Bayesian Networks—Core Properties and Definitions Explained Bayesian Networks: With Examples in R introduces Bayesian networks using a hands-on approach. Simple yet meaningful examples in R illustrate each step of the modeling process. The examples start from the simplest notions and gradually increase in complexity. The authors also distinguish the probabilistic models from their estimation with data sets. The first three chapters explain the whole process of Bayesian network modeling, from structure learning to parameter learning to inference. These chapters cover discrete Bayesian, Gaussian Bayesian, and hybrid networks, including arbitrary random variables. The book then gives a concise but rigorous treatment of the fundamentals of Bayesian networks and offers an introduction to causal Bayesian networks. It also presents an overview of R and other software packages appropriate for Bayesian networks. The final chapter evaluates two real-world examples: a landmark causal protein signaling network paper and graphical modeling approaches for predicting the composition of different body parts. Suitable for graduate students and non-statisticians, this text provides an introductory overview of Bayesian networks. It gives readers a clear, practical understanding of the general approach and steps involved.
Doing Meta-Analysis with R by Mathias Harrer,Pim Cuijpers,Toshi A. Furukawa,David D. Ebert Pdf
Doing Meta-Analysis with R: A Hands-On Guide serves as an accessible introduction on how meta-analyses can be conducted in R. Essential steps for meta-analysis are covered, including calculation and pooling of outcome measures, forest plots, heterogeneity diagnostics, subgroup analyses, meta-regression, methods to control for publication bias, risk of bias assessments and plotting tools. Advanced but highly relevant topics such as network meta-analysis, multi-three-level meta-analyses, Bayesian meta-analysis approaches and SEM meta-analysis are also covered. A companion R package, dmetar, is introduced at the beginning of the guide. It contains data sets and several helper functions for the meta and metafor package used in the guide. The programming and statistical background covered in the book are kept at a non-expert level, making the book widely accessible. Features • Contains two introductory chapters on how to set up an R environment and do basic imports/manipulations of meta-analysis data, including exercises • Describes statistical concepts clearly and concisely before applying them in R • Includes step-by-step guidance through the coding required to perform meta-analyses, and a companion R package for the book
There has been dramatic growth in the development and application of Bayesian inference in statistics. Berger (2000) documents the increase in Bayesian activity by the number of published research articles, the number of books,andtheextensivenumberofapplicationsofBayesianarticlesinapplied disciplines such as science and engineering. One reason for the dramatic growth in Bayesian modeling is the availab- ity of computational algorithms to compute the range of integrals that are necessary in a Bayesian posterior analysis. Due to the speed of modern c- puters, it is now possible to use the Bayesian paradigm to ?t very complex models that cannot be ?t by alternative frequentist methods. To ?t Bayesian models, one needs a statistical computing environment. This environment should be such that one can: write short scripts to de?ne a Bayesian model use or write functions to summarize a posterior distribution use functions to simulate from the posterior distribution construct graphs to illustrate the posterior inference An environment that meets these requirements is the R system. R provides a wide range of functions for data manipulation, calculation, and graphical d- plays. Moreover, it includes a well-developed, simple programming language that users can extend by adding new functions. Many such extensions of the language in the form of packages are easily downloadable from the Comp- hensive R Archive Network (CRAN).
Learning Bayesian Networks by Richard E. Neapolitan Pdf
In this first edition book, methods are discussed for doing inference in Bayesian networks and inference diagrams. Hundreds of examples and problems allow readers to grasp the information. Some of the topics discussed include Pearl's message passing algorithm, Parameter Learning: 2 Alternatives, Parameter Learning r Alternatives, Bayesian Structure Learning, and Constraint-Based Learning. For expert systems developers and decision theorists.
Bayesian Networks in R by Radhakrishnan Nagarajan,Marco Scutari,Sophie Lèbre Pdf
Bayesian Networks in R with Applications in Systems Biology is unique as it introduces the reader to the essential concepts in Bayesian network modeling and inference in conjunction with examples in the open-source statistical environment R. The level of sophistication is also gradually increased across the chapters with exercises and solutions for enhanced understanding for hands-on experimentation of the theory and concepts. The application focuses on systems biology with emphasis on modeling pathways and signaling mechanisms from high-throughput molecular data. Bayesian networks have proven to be especially useful abstractions in this regard. Their usefulness is especially exemplified by their ability to discover new associations in addition to validating known ones across the molecules of interest. It is also expected that the prevalence of publicly available high-throughput biological data sets may encourage the audience to explore investigating novel paradigms using the approaches presented in the book.
Innovations in Bayesian Networks by Dawn E. Holmes Pdf
Bayesian networks currently provide one of the most rapidly growing areas of research in computer science and statistics. In compiling this volume we have brought together contributions from some of the most prestigious researchers in this field. Each of the twelve chapters is self-contained. Both theoreticians and application scientists/engineers in the broad area of artificial intelligence will find this volume valuable. It also provides a useful sourcebook for Graduate students since it shows the direction of current research.
Russell G. Almond,Robert J. Mislevy,Linda S. Steinberg,Duanli Yan,David M. Williamson
Author : Russell G. Almond,Robert J. Mislevy,Linda S. Steinberg,Duanli Yan,David M. Williamson Publisher : Springer Page : 662 pages File Size : 42,5 Mb Release : 2015-03-10 Category : Social Science ISBN : 9781493921256
Bayesian Networks in Educational Assessment by Russell G. Almond,Robert J. Mislevy,Linda S. Steinberg,Duanli Yan,David M. Williamson Pdf
Bayesian inference networks, a synthesis of statistics and expert systems, have advanced reasoning under uncertainty in medicine, business, and social sciences. This innovative volume is the first comprehensive treatment exploring how they can be applied to design and analyze innovative educational assessments. Part I develops Bayes nets’ foundations in assessment, statistics, and graph theory, and works through the real-time updating algorithm. Part II addresses parametric forms for use with assessment, model-checking techniques, and estimation with the EM algorithm and Markov chain Monte Carlo (MCMC). A unique feature is the volume’s grounding in Evidence-Centered Design (ECD) framework for assessment design. This “design forward” approach enables designers to take full advantage of Bayes nets’ modularity and ability to model complex evidentiary relationships that arise from performance in interactive, technology-rich assessments such as simulations. Part III describes ECD, situates Bayes nets as an integral component of a principled design process, and illustrates the ideas with an in-depth look at the BioMass project: An interactive, standards-based, web-delivered demonstration assessment of science inquiry in genetics. This book is both a resource for professionals interested in assessment and advanced students. Its clear exposition, worked-through numerical examples, and demonstrations from real and didactic applications provide invaluable illustrations of how to use Bayes nets in educational assessment. Exercises follow each chapter, and the online companion site provides a glossary, data sets and problem setups, and links to computational resources.
Bayesian Networks by Olivier Pourret,Patrick Naïm,Bruce Marcot Pdf
Bayesian Networks, the result of the convergence of artificial intelligence with statistics, are growing in popularity. Their versatility and modelling power is now employed across a variety of fields for the purposes of analysis, simulation, prediction and diagnosis. This book provides a general introduction to Bayesian networks, defining and illustrating the basic concepts with pedagogical examples and twenty real-life case studies drawn from a range of fields including medicine, computing, natural sciences and engineering. Designed to help analysts, engineers, scientists and professionals taking part in complex decision processes to successfully implement Bayesian networks, this book equips readers with proven methods to generate, calibrate, evaluate and validate Bayesian networks. The book: Provides the tools to overcome common practical challenges such as the treatment of missing input data, interaction with experts and decision makers, determination of the optimal granularity and size of the model. Highlights the strengths of Bayesian networks whilst also presenting a discussion of their limitations. Compares Bayesian networks with other modelling techniques such as neural networks, fuzzy logic and fault trees. Describes, for ease of comparison, the main features of the major Bayesian network software packages: Netica, Hugin, Elvira and Discoverer, from the point of view of the user. Offers a historical perspective on the subject and analyses future directions for research. Written by leading experts with practical experience of applying Bayesian networks in finance, banking, medicine, robotics, civil engineering, geology, geography, genetics, forensic science, ecology, and industry, the book has much to offer both practitioners and researchers involved in statistical analysis or modelling in any of these fields.
Artificial Intelligence and Machine Learning by Mitra Baratchi,Lu Cao,Walter A. Kosters,Jefrey Lijffijt,Jan N. van Rijn,Frank W. Takes Pdf
This book contains a selection of the best papers of the 32nd Benelux Conference on Artificial Intelligence, BNAIC/Benelearn 2020, held in Leiden, The Netherlands, in November 2020. Due to the COVID-19 pandemic the conference was held online. The 12 papers presented in this volume were carefully reviewed and selected from 41 regular submissions. They address various aspects of artificial intelligence such as natural language processing, agent technology, game theory, problem solving, machine learning, human-agent interaction, AI and education, and data analysis. The chapter 11 is published open access under a CC BY license (Creative Commons Attribution 4.0 International License) Chapter “Gaining Insight into Determinants of Physical Activity Using Bayesian Network Learning” is available open access under a Creative Commons Attribution 4.0 International License via link.springer.com..
Interactive Collaborative Information Systems by Robert Babuška,Frans C.A. Groen Pdf
The increasing complexity of our world demands new perspectives on the role of technology in decision making. Human decision making has its li- tations in terms of information-processing capacity. We need new technology to cope with the increasingly complex and information-rich nature of our modern society. This is particularly true for critical environments such as crisis management and tra?c management, where humans need to engage in close collaborations with arti?cial systems to observe and understand the situation and respond in a sensible way. We believe that close collaborations between humans and arti?cial systems will become essential and that the importance of research into Interactive Collaborative Information Systems (ICIS) is self-evident. Developments in information and communication technology have ra- cally changed our working environments. The vast amount of information available nowadays and the wirelessly networked nature of our modern so- ety open up new opportunities to handle di?cult decision-making situations such as computer-supported situation assessment and distributed decision making. To make good use of these new possibilities, we need to update our traditional views on the role and capabilities of information systems. The aim of the Interactive Collaborative Information Systems project is to develop techniques that support humans in complex information en- ronments and that facilitate distributed decision-making capabilities. ICIS emphasizes the importance of building actor-agent communities: close c- laborations between human and arti?cial actors that highlight their comp- mentary capabilities, and in which task distribution is ?exible and adaptive.
Bayesian Artificial Intelligence by Kevin B. Korb,Ann E. Nicholson Pdf
As the power of Bayesian techniques has become more fully realized, the field of artificial intelligence has embraced Bayesian methodology and integrated it to the point where an introduction to Bayesian techniques is now a core course in many computer science programs. Unlike other books on the subject, Bayesian Artificial Intelligence keeps mathematical detail to a minimum and covers a broad range of topics. The authors integrate all of Bayesian net technology and learning Bayesian net technology and apply them both to knowledge engineering. They emphasize understanding and intuition but also provide the algorithms and technical background needed for applications. Software, exercises, and solutions are available on the authors’ website.
Bayesian Networks and Decision Graphs by Thomas Dyhre Nielsen,FINN VERNER JENSEN Pdf
This is a brand new edition of an essential work on Bayesian networks and decision graphs. It is an introduction to probabilistic graphical models including Bayesian networks and influence diagrams. The reader is guided through the two types of frameworks with examples and exercises, which also give instruction on how to build these models. Structured in two parts, the first section focuses on probabilistic graphical models, while the second part deals with decision graphs, and in addition to the frameworks described in the previous edition, it also introduces Markov decision process and partially ordered decision problems.
