Cortex Statistics And Geometry Of Neuronal Connectivity
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Cortex: Statistics and Geometry of Neuronal Connectivity by Valentino Braitenberg,Almut Schüz Pdf
By means of quantitative analysis of the tissue components in the cortex of the mouse, this book presents an overall picture of the cortical network which is then related to various theories on cortical function. Centering around the idea of a diffuse network in a fairly homogeneous population of excitatory neurons, that of the pyramidal cells, it shows that the whole organisation in the cortical skeleton of pryramidal cells corresponds well with the idea of an associative memory and with the theory of cell assemblies. Provides the reader with information on quantitative neuroanatomy and also on the methods used, in particular those that vary from the norm.
Anatomy of the Cortex by Valentino Braitenberg,Almut Schüz Pdf
In this essay we propose a view of the cerebral cortex from an unusual angle, determined by our search for the most general statements on the relation between cortical structure and function. Our results may be at variance with the ideas of those physiologists who have specialized subsystems of the cortex in mind, but are not in contrast with them, as we hope to show. Our view is akin to one presented by Moshe Abeles in his monograph Local Cortical Circuits ( 1982). It is related to the theory developed by Gunther Palm, for many years our partner, in Neural Assemblies (1982). It owes much to the ideas which inspire the work of George Gerstein (beginning with the classic: Gerstein 1962) and especially to the insights gained by our colleague Ad Aertsen and his group in TUbingen. Our ideas on the cortex find some resonance in a recent trend in Artificial Intelligence (Kohonen 1977; Hopfield 1982; Rumelhart et al. 1986), and indeed the diagram (Braitenberg 1974a) representing the dominant idea of that trend, the associative matrix with feedback, has served as an emblem for the editorial enterprise Studies of Brain Function since its inception in 1977. Since our earlier reports (Braitenberg 1974a,b, 1977, 1978a,b, 1986; Schilz 1976, 1978, 198la,b, 1986) enough new experimental evidence has accumulated in our own laboratory (summarized by Schilz 1989) and elsewhere to justify a more extended and more confident presen tation.
Quantitative analysis of neuroanatomy by Julian M L Budd,Hermann Cuntz,Stephen J Eglen,Patrik Krieger Pdf
The true revolution in the age of digital neuroanatomy is the ability to extensively quantify anatomical structures and thus investigate structure-function relationships in great detail. Large-scale projects were recently launched with the aim of providing infrastructure for brain simulations. These projects will increase the need for a precise understanding of brain structure, e.g., through statistical analysis and models. From articles in this Research Topic, we identify three main themes that clearly illustrate how new quantitative approaches are helping advance our understanding of neural structure and function. First, new approaches to reconstruct neurons and circuits from empirical data are aiding neuroanatomical mapping. Second, methods are introduced to improve understanding of the underlying principles of organization. Third, by combining existing knowledge from lower levels of organization, models can be used to make testable predictions about a higher-level organization where knowledge is absent or poor. This latter approach is useful for examining statistical properties of specific network connectivity when current experimental methods have not yet been able to fully reconstruct whole circuits of more than a few hundred neurons.
Cognitive Phase Transitions in the Cerebral Cortex - Enhancing the Neuron Doctrine by Modeling Neural Fields by Robert Kozma,Walter J. Freeman Pdf
This intriguing book was born out of the many discussions the authors had in the past 10 years about the role of scale-free structure and dynamics in producing intelligent behavior in brains. The microscopic dynamics of neural networks is well described by the prevailing paradigm based in a narrow interpretation of the neuron doctrine. This book broadens the doctrine by incorporating the dynamics of neural fields, as first revealed by modeling with differential equations (K-sets). The book broadens that approach by application of random graph theory (neuropercolation). The book concludes with diverse commentaries that exemplify the wide range of mathematical/conceptual approaches to neural fields. This book is intended for researchers, postdocs, and graduate students, who see the limitations of network theory and seek a beachhead from which to embark on mesoscopic and macroscopic neurodynamics.
From Neuron to Cognition via Computational Neuroscience by Michael A. Arbib,James J. Bonaiuto Pdf
A comprehensive, integrated, and accessible textbook presenting core neuroscientific topics from a computational perspective, tracing a path from cells and circuits to behavior and cognition. This textbook presents a wide range of subjects in neuroscience from a computational perspective. It offers a comprehensive, integrated introduction to core topics, using computational tools to trace a path from neurons and circuits to behavior and cognition. Moreover, the chapters show how computational neuroscience—methods for modeling the causal interactions underlying neural systems—complements empirical research in advancing the understanding of brain and behavior. The chapters—all by leaders in the field, and carefully integrated by the editors—cover such subjects as action and motor control; neuroplasticity, neuromodulation, and reinforcement learning; vision; and language—the core of human cognition. The book can be used for advanced undergraduate or graduate level courses. It presents all necessary background in neuroscience beyond basic facts about neurons and synapses and general ideas about the structure and function of the human brain. Students should be familiar with differential equations and probability theory, and be able to pick up the basics of programming in MATLAB and/or Python. Slides, exercises, and other ancillary materials are freely available online, and many of the models described in the chapters are documented in the brain operation database, BODB (which is also described in a book chapter). Contributors Michael A. Arbib, Joseph Ayers, James Bednar, Andrej Bicanski, James J. Bonaiuto, Nicolas Brunel, Jean-Marie Cabelguen, Carmen Canavier, Angelo Cangelosi, Richard P. Cooper, Carlos R. Cortes, Nathaniel Daw, Paul Dean, Peter Ford Dominey, Pierre Enel, Jean-Marc Fellous, Stefano Fusi, Wulfram Gerstner, Frank Grasso, Jacqueline A. Griego, Ziad M. Hafed, Michael E. Hasselmo, Auke Ijspeert, Stephanie Jones, Daniel Kersten, Jeremie Knuesel, Owen Lewis, William W. Lytton, Tomaso Poggio, John Porrill, Tony J. Prescott, John Rinzel, Edmund Rolls, Jonathan Rubin, Nicolas Schweighofer, Mohamed A. Sherif, Malle A. Tagamets, Paul F. M. J. Verschure, Nathan Vierling-Claasen, Xiao-Jing Wang, Christopher Williams, Ransom Winder, Alan L. Yuille
In the new edition of Neural Assemblies, the author places his original ideas and motivations within the framework of modern and cognitive neuroscience and gives a short and focused overview of the development of computational neuroscience and artificial neural networks over the last 40 years. In this book the author develops a theory of how the human brain might function. Starting with a motivational introduction to the brain as an organ of information processing, he presents a computational perspective on the basic concepts and ideas of neuroscience research on the underlying principles of brain function. In addition, the reader is introduced to the most important methods from computer science and mathematical modeling that are required for a computational understanding of information processing in the brain. Written by an expert in the field of neural information processing, this book offers a personal historical view of the development of artificial intelligence, artificial neural networks, and computational cognitive neuroscience over the last 40 years, with a focus on the realization of higher cognitive functions rather than more peripheral sensory or motor organization. The book is therefore aimed at students and researchers who want to understand how the basic neuroscientific and computational concepts in the study of brain function have changed over the last decades.
Metastable Dynamics of Neural Ensembles by Emili Balaguer-Ballester,Ruben Moreno-Bote,Gustavo Deco,Daniel Durstewitz Pdf
A classical view of neural computation is that it can be characterized in terms of convergence to attractor states or sequential transitions among states in a noisy background. After over three decades, is this still a valid model of how brain dynamics implements cognition? This book provides a comprehensive collection of recent theoretical and experimental contributions addressing the question of stable versus transient neural population dynamics from complementary angles. These studies showcase recent efforts for designing a framework that encompasses the multiple facets of metastability in neural responses, one of the most exciting topics currently in systems and computational neuroscience.
The study of areas in the cerebral cortex has a long history, bringing empirical data into close relation with fundamental conceptual issues about the cortex. The subject is currently being revitalized with the advent of new experimental methods and this book brings a modern perspective to the study of these areas. Cortical Areas: Unity and Diversi
The Mouse Nervous System by Charles Watson,George Paxinos,Luis Puelles Pdf
The Mouse Nervous System provides a comprehensive account of the central nervous system of the mouse. The book is aimed at molecular biologists who need a book that introduces them to the anatomy of the mouse brain and spinal cord, but also takes them into the relevant details of development and organization of the area they have chosen to study. The Mouse Nervous System offers a wealth of new information for experienced anatomists who work on mice. The book serves as a valuable resource for researchers and graduate students in neuroscience. Systematic consideration of the anatomy and connections of all regions of the brain and spinal cord by the authors of the most cited rodent brain atlases A major section (12 chapters) on functional systems related to motor control, sensation, and behavioral and emotional states A detailed analysis of gene expression during development of the forebrain by Luis Puelles, the leading researcher in this area Full coverage of the role of gene expression during development and the new field of genetic neuroanatomy using site-specific recombinases Examples of the use of mouse models in the study of neurological illness
Towards an Integrated Approach to Measurement, Analysis and Modeling of Cortical Networks by A. Ravishankar Rao,Guillermo A. Cecchi,Ehud Kaplan Pdf
The amount of data being produced by neuroscientists is increasing rapidly, driven by advances in neuroimaging and recording techniques spanning multiple scales of resolution. The availability of such data poses significant challenges for their processing and interpretation. To gain a deeper understanding of the surrounding issues, the Editors of this e-Book reached out to an interdisciplinary community, and formed the Cortical Networks Working Group, and the genesis of this e-Book thus began with the formation of this Working Group, which was supported by the National Institute for Mathematical and Biological Synthesis in the USA. The Group consisted of scientists from neuroscience, physics, psychology and computer science, and meetings were held in person. (A detailed list of the group members is presented in the Editorial that follows.) At the time we started, in 2010, the term “big data” was hardly in existence, though the volume of data we were handling would certainly have qualified. Furthermore, there was significant interest in harnessing the power of supercomputers to perform large scale neuronal simulations, and in creating specialized hardware to mimic neural function. We realized that the various disciplines represented in our Group could and should work together to accelerate progress in Neuroscience. We searched for common threads that could define the foundation for an integrated approach to solve important problems in the field. We adopted a network-centric perspective to address these challenges, as the data are derived from structures that are themselves network-like. We proposed three inter-twined threads, consisting of measurement of neural activity, analysis of network structures deduced from this activity, and modeling of network function, leading to theoretical insights. This approach formed the foundation of our initial call for papers. When we issued the call for papers, we were not sure how many papers would fall into each of these threads. We were pleased that we found significant interest in each thread, and the number of submissions exceeded our expectations. This is an indication that the field of neuroscience is ripe for the type of integration and interchange that we had anticipated. We first published a special topics issue after we received a sufficient number of submissions. This is now being converted to an e-book to strengthen the coherence of its contributions. One of the strong themes emerging in this e-book is that network-based measures capture better the dynamics of brain processes, and provide features with greater discriminative power than point-based measures. Another theme is the importance of network oscillations and synchrony. Current research is shedding light on the principles that govern the establishment and maintenance of network oscillation states. These principles could explain why there is impaired synchronization between different brain areas in schizophrenics and Parkinson’s patients. Such research could ultimately provide the foundation for an understanding of other psychiatric and neurodegenerative conditions. The chapters in this book cover these three main threads related to cortical networks. Some authors have combined two or more threads within a single chapter. We expect the availability of related work appearing in a single e-book to help our readers see the connection between different research efforts, and spur further insights and research.
Neuroscience Databases: A Practical Guide is the first book providing a comprehensive overview of these increasingly important databases. This volume makes the results of the Human Genome Project and other recent large-scale initiatives in the neurosciences available to a wider community. It extends the scope of bioinformatics from the molecular to the cellular, microcircuitry and systems levels, dealing for the first time with complex neuroscientific issues and leading the way to a new culture of data sharing and data mining necessary to successfully tackle neuroscience questions. Aimed at the novice user who wants to access the data, it provides clear and concise instructions on how to download the available data sets and how to use the software with a minimum of technical detail with most chapters written by the database creators themselves.
Wiring Principles of Cerebral Cortex by Julian Budd, Zoltán F. Kisvárday Pdf
Cerebral cortex is probably the most complex biological network. Here many millions of individual neurons, the functional units of cortex, are interconnected through a massive yet highly organized pattern of axonal and dendritic wiring. This wiring enables both near and distant cells to coordinate their responses and generate a rich variety of cognitions and behaviours. When the wiring is damaged through disease or trauma it may reorganize but this may lead to characteristic pathological behaviours. While there have been significant advances in mapping cortical connectivity, the organizing principles and function of this connectivity are not well understood. On the one hand, there appears to be general design constraints governing cortical wiring, as first recognised by Rámon y Cajal's in his laws of conduction, material, and volume conservation. Yet on the other hand, particular patterns of cortical wiring exist to serve specific functions. There is a wide gap in understanding how the response and connectivity properties of a single neuron contribute to emergent network functions such as in detecting perceptually relevant features. Unravelling this intimate causal relationship represents one of the major challenges in neuroscience. This Research Topic will examine progress in understanding cortical wiring principles. This Research Topic aims to draw together recent advances in methods and understanding as well as recent challenges to existing ideas about how cerebral cortex is wired. This is particularly timely because new automated techniques may soon yield huge datasets in need of explanation. Recent studies have, for instance, empirically evaluated Rámon y Cajal's conservation laws for cerebral cortex, while others have shown some unexpected connectivity features that may refine the traditional view of how corticocortical connections are organised with regard to functional representations of auditory, somatosensory and visual cortices. Understanding these data will help improve the fidelity of neural models of cerebral cortical function and take into account the diversity of connections at both micro- and mesoscopic scales not seen at such a depth before.
The Handbook of Brain Theory and Neural Networks by Michael A. Arbib Pdf
This second edition presents the enormous progress made in recent years in the many subfields related to the two great questions : how does the brain work? and, How can we build intelligent machines? This second edition greatly increases the coverage of models of fundamental neurobiology, cognitive neuroscience, and neural network approaches to language. (Midwest).
