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Genetic Diversity of Soil Bacterial Communities by Carmine Crecchio Pdf
The book contains research articles and reviews recently published online for the MDPI journal Diversity, in the Special Issue "Genetic diversity of soil bacterial communities". The issue aimed to collect up to date information from the international scientific community to get insight in the "black box", as soil has been defined in the last decades, focusing in detail on the role that the microbial communities have in soil processes such as carbon and nutrient fluxes and on their genetic and functional diversity. The book meets the interests of scientific communities directly involved in the topics investigated, as well as of PhD students, scholars, professional organizations interested in improving their knowledge on a group of organisms considered vitally important to the maintenance and sustainability of the biosphere, where soil has a key role as an important natural resource.
Genetic Diversity of Soil Bacterial Communities by Carmine Crecchio Pdf
The book contains research articles and reviews recently published online for the MDPI journal Diversity, in the Special Issue "Genetic diversity of soil bacterial communities". The issue aimed to collect up to date information from the international scientific community to get insight in the "black box", as soil has been defined in the last decades, focusing in detail on the role that the microbial communities have in soil processes such as carbon and nutrient fluxes and on their genetic and functional diversity. The book meets the interests of scientific communities directly involved in the topics investigated, as well as of PhD students, scholars, professional organizations interested in improving their knowledge on a group of organisms considered vitally important to the maintenance and sustainability of the biosphere, where soil has a key role as an important natural resource.
Microbial Communities by Heribert Insam,Andrea Rangger Pdf
Research on decomposer communities of terrestrial ecosystems for a long time has focussed on microbial biomass and gross turnover parameters. Recently, more and more attempts are made to look beyond the biomass, and more specifically determine functions and populations on a smaller scale-in time and space. A multitude of techniques is being improved and developed. Garland and Mills (1991) triggered a series of publications on substrate utilization tests in the field of microbial ecology. Despite several promising results for different applications in different laboratories, many problems concerning the assay and the interpretation of results became evident. After individual discussions on the approach with colleagues from various laboratories we started to plan a workshop on the matter. The response on our first circular was extraordinary, and instead of a small workshop it became a meeting with almost 150 participants. The meeting was named 'Substrate use for characterization of microbial communities in terrestrial ecosystems' (SUBMECO) and was held in Innsbruck, Austria, from Oct. 16-18, 1996. The very focussed scope attracted enthusiastic advocates of the approach, and also serious critics. Some of the topics concerned improvements of current inoculation and incubation techniques, ranging from sample pre-treatment, inoculum density and incubation temperature to statistical data handling. New methods for calculating microbial diversity were proposed, as well as bootstrap methods that allow statistics with many variables on a relatively low number of replicates.
Bacterial Diversity in Sustainable Agriculture by Dinesh K. Maheshwari Pdf
The earth’s biodiversity is a degree of ecosystem health which is vital to ecology and environmental sustainability. The microbial world is the largest unexplored reservoir. The agro-ecosystem enriched with rhizosphere implicit abundant and species-rich component of microbial diversity. Its global exploration designs a worldwide framework for agricultural sustainability adjoining benefits in its conservation. Agricultural sustainability requires a major share from ecosystem management which is better paid by microbial diversity and conservation. Diversity of bacteria influences plant productivity providing nutrient convenience from soil instead altering per se community and diversity in the rhizosphere where they may influence mechanistic competent and antagonistic micro-flora. The potential species among the diversity are therefore, essential subjective to their maintenance for use around the globe. Microbial population in agro-ecosystem is influenced by stresses, reduce functionality as a component. It is therefore, important to explore secrets of planned strategy so as to unravel the microbial diversity and conservation in agricultural development. Microorganisms are minute, pervasive in nature and alleged as disease host instead tiny recognize as employee of agro-ecosystem, indulge in agricultural development and potential contributor in world of ecological and economical wealth creation. This step pertinently would help to launch scientific motivation needed to support the refrain of microbial diversity and conservation.
Genetic Diversity in Microorganisms by Mahmut Caliskan Pdf
Genetic Diversity in Microorganisms presents chapters revealing the magnitude of genetic diversity of microorganisms living in different environmental conditions. The complexity and diversity of microbial populations is by far the highest among all living organisms. The diversity of microbial communities and their ecologic roles are being explored in soil, water, on plants and in animals, and in extreme environments such as the arctic deep-sea vents or high saline lakes. The increasing availability of PCR-based molecular markers allows the detailed analyses and evaluation of genetic diversity in microorganisms. The purpose of the book is to provide a glimpse into the dynamic process of genetic diversity of microorganisms by presenting the thoughts of scientists who are engaged in the generation of new ideas and techniques employed for the assessment of genetic diversity, often from very different perspectives. The book should prove useful to students, researchers, and experts in the area of microbial phylogeny, genetic diversity, and molecular biology.
Genetic Diversity in Microorganisms by Mahmut Caliskan Pdf
Genetic Diversity in Microorganisms presents chapters revealing the magnitude of genetic diversity of microorganisms living in different environmental conditions. The complexity and diversity of microbial populations is by far the highest among all living organisms. The diversity of microbial communities and their ecologic roles are being explored in soil, water, on plants and in animals, and in extreme environments such as the arctic deep-sea vents or high saline lakes. The increasing availability of PCR-based molecular markers allows the detailed analyses and evaluation of genetic diversity in microorganisms. The purpose of the book is to provide a glimpse into the dynamic process of genetic diversity of microorganisms by presenting the thoughts of scientists who are engaged in the generation of new ideas and techniques employed for the assessment of genetic diversity, often from very different perspectives. The book should prove useful to students, researchers, and experts in the area of microbial phylogeny, genetic diversity, and molecular biology.
Molecular Diversity of Environmental Prokaryotes by Thiago Bruce Rodrigues,Amaro Emiliano Trindade Silva Pdf
This book correlates the vast genetic diversity associated with environmental samples and still underexploited potential for the development of biotechnology products. The book points out the potential of different types of environmental samples. It presents the main characteristics of microbial diversity, the main approaches used for molecular characterization of the diversity, and practical examples of application of the exploration of the microbial diversity. It presents a not-yet-explored structure for discussing the main topics related to molecular biology of environmental prokaryotes and their biotechnological applications.
Genetics of Bacterial Diversity by David A. Hopwood,Keith F. Chater Pdf
Genetics of Bacterial Diversity focuses on the rapidly developing field of ""non-K-12"" bacterial genetics that is largely outside the scope of other texts. The book begins with an introductory chapter that outlines the phylogenetic relationships of bacteria and the range of metabolic, behavioral, and developmental phenomena displayed by them. Two chapters then review the genetic processes found in bacteria generally, and discuss a range of genetic techniques used to analyze the various special systems described in the body of the book, respectively. Subsequent chapters deal with various special metabolic capabilities characteristic of certain groups of bacteria (light production, photosynthesis, nitrogen fixation, antibiotic production, degradation of aromatic compounds and mercury resistance); developmental processes of cell-cycle associated motility, sporulation, and specialized colonial behavior; four components of bacterial pathogenicity for animals; and pathogenic and symbiotic interactions of bacteria with higher plants. The final chapter explains some of the concepts and the progress being made in the application of population genetics to bacteria. This book may be of interest to microbiologists wishing to catch up on the genetic basis of some of the classical phenomena of bacteriology, and geneticists unfamiliar with some of the things that bacteria can accomplish.
Modern Soil Microbiology by Jan Dirk van Elsas,Jack T. Trevors,Janet K. Jansson,Paola Nannipieri Pdf
In the ten years since the publication of Modern Soil Microbiology, the study of soil microbiology has significantly changed, both in the understanding of the diversity and function of soil microbial communities and in research methods. Ideal for students in a variety of disciplines, this second edition provides a cutting-edge examination of a fascinating discipline that encompasses ecology, physiology, genetics, molecular biology, and biotechnology, and makes use of biochemical and biophysical approaches. The chapters cover topics ranging from the fundamental to the applied and describe the use of advanced methods that have provided a great thrust to the discipline of soil microbiology. Using the latest molecular analyses, they integrate principles of soil microbiology with novel insights into the physiology of soil microorganisms. The authors discuss the soil and rhizosphere as habitats for microorganisms, then go on to describe the different microbial groups, their adaptive responses, and their respective processes in interactive and functional terms. The book highlights a range of applied aspects of soil microbiology, including the nature of disease-suppressive soils, the use of biological control agents, biopesticides and bioremediation agents, and the need for correct statistics and experimentation in the analyses of the data obtained from soil systems.
Modern Soil Microbiology, Third Edition by Jan Dirk van Elsas,Jack T. Trevors,Alexandre Soares Rosado,Paolo Nannipieri Pdf
The living soil is crucial to photosynthesis, biogeochemical cycles, global food production, climate change, biodiversity, and plant and animal health. In the past decade, scientists have made significant advances in soil microbiology research. While the basic principles are now better understood, knowledge has been forthcoming on the best available technologies and methods applied to researching soil microorganisms, their diversity, interactions, biochemistry, survival, gene expression, and their roles in global climate change, plant disease suppression and growth stimulation, and biogeochemical cycles. This knowledge can be applied to better predict the transformation of pollutants in soil and the activities of microbes in the rhizosphere. It will also assist us in fostering crop production in an era with an increasing human population and intensification of agriculture. Following the tradition of its predecessors, Modern Soil Microbiology, Third Edition, is an indispensable source that supports graduate/undergraduate teaching for soil and environmental microbiologists in academia, as well as in government and industrial laboratories. It is a comprehensive collection of chapters on various aspects of soil microbiology, useful for all professionals working with soils. Compiled by internationally renowned educators and research scholars, this textbook contains key tables, figures, and photographs, supported by thousands of references to illustrate the depth of knowledge in soil microbiology. FEATURES Fully updated and expanded to include new key chapters on historical developments, future applications, and soil viruses and proteins Discusses molecular methods applied to soil microbiology, diverse soil microorganisms, and global climate change Emphasizes the role of terrestrial microorganisms and cycles involved in climate change Details the latest molecular methods applied to soil microbiology research User-friendly for students, and containing numerous tables, figures, and illustrations to better understand the current knowledge in soil microbiology
National Research Council,Division on Earth and Life Studies,Board on Life Sciences,Committee on Metagenomics: Challenges and Functional Applications
Author : National Research Council,Division on Earth and Life Studies,Board on Life Sciences,Committee on Metagenomics: Challenges and Functional Applications Publisher : National Academies Press Page : 170 pages File Size : 52,9 Mb Release : 2007-06-24 Category : Science ISBN : 9780309106764
The New Science of Metagenomics by National Research Council,Division on Earth and Life Studies,Board on Life Sciences,Committee on Metagenomics: Challenges and Functional Applications Pdf
Although we can't usually see them, microbes are essential for every part of human life-indeed all life on Earth. The emerging field of metagenomics offers a new way of exploring the microbial world that will transform modern microbiology and lead to practical applications in medicine, agriculture, alternative energy, environmental remediation, and many others areas. Metagenomics allows researchers to look at the genomes of all of the microbes in an environment at once, providing a "meta" view of the whole microbial community and the complex interactions within it. It's a quantum leap beyond traditional research techniques that rely on studying-one at a time-the few microbes that can be grown in the laboratory. At the request of the National Science Foundation, five Institutes of the National Institutes of Health, and the Department of Energy, the National Research Council organized a committee to address the current state of metagenomics and identify obstacles current researchers are facing in order to determine how to best support the field and encourage its success. The New Science of Metagenomics recommends the establishment of a "Global Metagenomics Initiative" comprising a small number of large-scale metagenomics projects as well as many medium- and small-scale projects to advance the technology and develop the standard practices needed to advance the field. The report also addresses database needs, methodological challenges, and the importance of interdisciplinary collaboration in supporting this new field.
Modern Soil Microbiology, Second Edition by Jan Dirk van Elsas,Janet K. Jansson,Jack T. Trevors Pdf
In the ten years since the publication of Modern Soil Microbiology, the study of soil microbiology has significantly changed, both in the understanding of the diversity and function of soil microbial communities and in research methods. Ideal for students in a variety of disciplines, this second edition provides a cutting-edge examination of a fascinating discipline that encompasses ecology, physiology, genetics, molecular biology, and biotechnology, and makes use of biochemical and biophysical approaches. The chapters cover topics ranging from the fundamental to the applied and describe the use of advanced methods that have provided a great thrust to the discipline of soil microbiology. Using the latest molecular analyses, they integrate principles of soil microbiology with novel insights into the physiology of soil microorganisms. The authors discuss the soil and rhizosphere as habitats for microorganisms, then go on to describe the different microbial groups, their adaptive responses, and their respective processes in interactive and functional terms. The book highlights a range of applied aspects of soil microbiology, including the nature of disease-suppressive soils, the use of biological control agents, biopesticides and bioremediation agents, and the need for correct statistics and experimentation in the analyses of the data obtained from soil systems.
Criminal and Environmental Soil Forensics by Karl Ritz,Lorna Dawson,David Miller Pdf
Soils have important roles to play in criminal and environmental forensic science. Since the initial concept of using soil in forensic investigations was mooted by Conan Doyle in his Sherlock Holmes stories prior to real-world applications, this branch of forensic science has become increasingly sophisticated and broad. New techniques in chemical, physical, biological, ecological and spatial analysis, coupled with informatics, are being applied to reducing areas of search by investigators, site identification, site comparison and measurement for the eventual use as evidence in court. Soils can provide intelligence, in assisting the determination of the provenance of samples from artifacts, victims or suspects, enabling their linkage to locations or other evidence. They also modulate change in surface or buried cadavers and hence affect the ability to estimate post-mortem or post-burial intervals, and locate clandestine graves. This interdisciplinary volume explores the conceptual and practical interplay of soil and geoforensics across the scientific, investigative and legal fields. Supported by reviews, case-studies from across the world, and reports of original research, it demonstrates the increasing convergence of a wide range of knowledge. It covers conceptual issues, evidence (from recovery to use in court), geoforensics, taphonomy, as well as leading-edge technologies. The application of the resultant soil forensics toolbox is leading to significant advances in improving crime detection, and environmental and national security.
Microbial Ecology by Karla B. Heidelberg,David Probandt Pdf
Microbial ecology deals with the interaction of microorganisms with their environment, which is an essential component in understanding the functioning of the global ecosystem. Microbes are the most abundant organisms on and in our planet, some of which grow at incredible rates. Microbes such as Bacteria, Archaea, Protists represent "the invisible presence" and are found in most terrestrial and aquatic systems. As a result of their shear numbers and high rates of growth they can have significant impact on their chemical environment. Microbial ecology lacks the firm theoretical basis of traditional ecology and, as a result, has suffered from being empirical in nature and descriptive in practice. Thus, it is essential to build the theoretical basis of microbial ecology with studies on fundamental aspects of microbial diversity and in situ function. In recent years the use of ribosomal RNAs (rRNAs) and their genes have produced an authentic revolution in microbial ecology. The sequencing of these genes has allowed a whole range of microorganisms, mainly prokaryotes, to be studied without running into selective enrichment and isolation problems. Most molecular ecology techniques are based on these genes. Microbial Ecology is focused on the presentation of high-quality scientific investigations of how microorganisms interact with their environment, with each other and with their hosts. It is intended to present insights into the dynamic process of genetic diversity of microorganisms by presenting the contributions of scientists ad subject specialists who are engaged in the generation of new ideas and techniques employed for the assessment of microbial ecology in different perspectives. The chapters' content discloses the magnitude of genetic diversity of microorganisms living in different environmental conditions. The complexity and diversity of microbial populations is by far the highest among all living organisms. The diversity of microbial communities and their ecologic roles are being explored in soil, water, on plants and in animals, and in extreme environments. The book will be of valued to students, researchers, and experts in the area of microbial phylogeny, genetic diversity, and molecular biology.
Soil Microbiology and Sustainable Crop Production by Geoffrey R. Dixon,Emma L. Tilston Pdf
Soils into which crop plants root and from which they obtain essential minerals and water contain huge arrays of microbes. Many have highly beneficial effects on crop growth and productivity, others are pathogens causing diseases and losses to yield and quality, a few microbes offer protection from these pathogenic forms and others have little or no effect. These intimate and often complex inter-relationships are being explored with increasing success providing exciting opportunities for increasing crop yields and quality in sustainable harmony with the populations of beneficial soil microbes and to the detriment of pathogens. This book explores current knowledge for each of these aspects of soil microbiology and indicates where future progress is most likely to aid in increasing crop productivity by means which are environmentally benign and beneficial.
