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Author : James T. Tambong,Mamadou L. Fall,Guillaume J. Bilodeau
Publisher : Frontiers Media SA
Page : 317 pages
File Size : 41,9 Mb
Release : 2023-11-16
Category : Science
ISBN : 9782832539187
Author : Surajit Das,Hirak Ranjan Dash
Publisher : Academic Press
Page : 715 pages
File Size : 55,8 Mb
Release : 2018-09-20
Category : Science
ISBN : 9780128148501
Microbial Diversity in the Genomic Era presents insights on the techniques used for microbial taxonomy and phylogeny, along with their applications and respective pros and cons. Though many advanced techniques for the identification of any unknown bacterium are available in the genomics era, a far fewer number of the total microbial species have been discovered and identified to date. The assessment of microbial taxonomy and biosystematics techniques discovered and practiced in the current genomics era with suitable recommendations is the prime focus of this book. Discusses the techniques used for microbial taxonomy and phylogeny with their applications and respective pros and cons Reviews the evolving field of bacterial typing and the genomic technologies that enable comparative analysis of multiple genomes and the metagenomes of complex microbial environments Provides a uniform, standard methodology for species designation
Author : Dennis C. Gross,Ann Lichens-Park,Chittaranjan Kole
Publisher : Springer
Page : 283 pages
File Size : 52,9 Mb
Release : 2014-06-16
Category : Science
ISBN : 9783642553783
This book describes how genomics has revolutionized our scientific understanding of agriculturally important plant-associated bacteria. Each chapter focuses on the genomics of particular bacteria: the first described plant pathogen, Erwinia amylovora; phytoplasmas lacking cell walls; fastidious, phloem-restricted liberibacters; Pseudomonas syringae, which is a genetically tractable model system; Xanthomonas citri, which causes a disease that can devastate citrus crops and Pseudomonas fluorescens, which can protect plants from diseases. Topics considered in this volume include the importance of horizontal gene transfer in originating new bacterial strains and species and advances in transcriptomics that allow us to describe the complex regulatory networks critical to plant-microbe interactions. The availability of the Xanthomonas oryzae genome has led to new technologies in genome editing, which will revolutionize approaches to genetic engineering, even in eukaryotes. The contributions show how genomics has greatly accelerated progress toward understanding the biology of these bacteria and how that understanding can be translated into novel crop protection methods.
Author : Dilfuza Egamberdieva,Parvaiz Ahmad
Publisher : Springer
Page : 384 pages
File Size : 41,9 Mb
Release : 2018-02-06
Category : Technology & Engineering
ISBN : 9789811055140
This book presents state-of-the-art research on the many facets of the plant microbiome, including diversity, ecology, physiology and genomics, as well as molecular mechanisms of plant-microbe interactions. Topics considered include the importance of microbial secondary metabolites in stimulating plant growth, induced systemic resistance, tolerance to abiotic stress, and biological control of plant pathogens. The respective contributions show how microbes help plants to cope with abiotic stresses, and represent significant progress toward understanding the complex regulatory networks critical to host-microbe interaction and plant adaptation in extreme environments. New insights into the mechanisms of microbial actions in inducing plant stress tolerance open new doors for improving the efficacy of microbial strategies, and could produce new ways of economically increasing crop yields without harming the environment. As such, this book offers an essential resource for students and researchers with an interest in plant-microbe interaction, as well as several possibilities for employing the plant microbiome in the enhancement of crop productivity under future climate change scenarios.
Author : Jesús L. Romalde,Sabela Balboa,Antonio Ventosa
Publisher : Frontiers Media SA
Page : 375 pages
File Size : 46,7 Mb
Release : 2019-12-31
Category : Electronic
ISBN : 9782889630509
The great diversity of microbial life is the remaining major reservoir of unknown biological diversity on earth. To understand this vast, but largely unperceived diversity with its untapped genetic, enzymatic and industrial potential, microbial systematics is undergoing a revolutionary change in its approach to describe novel taxa based on genomic/envirogenomic information. The characterization of an organism is no longer bounded by methodological barriers, and it is now possible to fully sequence the whole genome of a strain to study individual genes, or to examine the genetic information by using different techniques. In fact, application of genomics is helping not only to provide a better understanding of the boundaries of genera and higher levels of classification, but also to refine our definition of the species concept. In addition, increased understanding of phylogeny is allowing to predict the genetic potential of microorganisms for biotechnological applications and adaptation to environmental changes. The present Research Topic on “Microbial Taxonomy, Phylogeny and Biodiversity” compiles a collection of papers covering the use of genomic sequence data in microbial taxonomy and systematics, including evolutionary relatedness of microorganisms; application of comparative genomics in systematic studies; or metagenomic approaches for biodiversity studies. We hope that this eBook incentives and encourages researchers for future discussions on microbial taxonomy and phylogenetics.
Author : Institute of Medicine,Board on Global Health,Forum on Microbial Threats
Publisher : National Academies Press
Page : 633 pages
File Size : 50,5 Mb
Release : 2013-01-10
Category : Medical
ISBN : 9780309264327
Beginning with the germ theory of disease in the 19th century and extending through most of the 20th century, microbes were believed to live their lives as solitary, unicellular, disease-causing organisms . This perception stemmed from the focus of most investigators on organisms that could be grown in the laboratory as cellular monocultures, often dispersed in liquid, and under ambient conditions of temperature, lighting, and humidity. Most such inquiries were designed to identify microbial pathogens by satisfying Koch's postulates.3 This pathogen-centric approach to the study of microorganisms produced a metaphorical "war" against these microbial invaders waged with antibiotic therapies, while simultaneously obscuring the dynamic relationships that exist among and between host organisms and their associated microorganisms-only a tiny fraction of which act as pathogens. Despite their obvious importance, very little is actually known about the processes and factors that influence the assembly, function, and stability of microbial communities. Gaining this knowledge will require a seismic shift away from the study of individual microbes in isolation to inquiries into the nature of diverse and often complex microbial communities, the forces that shape them, and their relationships with other communities and organisms, including their multicellular hosts. On March 6 and 7, 2012, the Institute of Medicine's (IOM's) Forum on Microbial Threats hosted a public workshop to explore the emerging science of the "social biology" of microbial communities. Workshop presentations and discussions embraced a wide spectrum of topics, experimental systems, and theoretical perspectives representative of the current, multifaceted exploration of the microbial frontier. Participants discussed ecological, evolutionary, and genetic factors contributing to the assembly, function, and stability of microbial communities; how microbial communities adapt and respond to environmental stimuli; theoretical and experimental approaches to advance this nascent field; and potential applications of knowledge gained from the study of microbial communities for the improvement of human, animal, plant, and ecosystem health and toward a deeper understanding of microbial diversity and evolution. The Social Biology of Microbial Communities: Workshop Summary further explains the happenings of the workshop.
Author : National Research Council,Division on Earth and Life Studies,Board on Life Sciences,Committee on Metagenomics: Challenges and Functional Applications
Publisher : National Academies Press
Page : 170 pages
File Size : 54,8 Mb
Release : 2007-06-24
Category : Science
ISBN : 9780309106764
Although we can't usually see them, microbes are essential for every part of human life-indeed all life on Earth. The emerging field of metagenomics offers a new way of exploring the microbial world that will transform modern microbiology and lead to practical applications in medicine, agriculture, alternative energy, environmental remediation, and many others areas. Metagenomics allows researchers to look at the genomes of all of the microbes in an environment at once, providing a "meta" view of the whole microbial community and the complex interactions within it. It's a quantum leap beyond traditional research techniques that rely on studying-one at a time-the few microbes that can be grown in the laboratory. At the request of the National Science Foundation, five Institutes of the National Institutes of Health, and the Department of Energy, the National Research Council organized a committee to address the current state of metagenomics and identify obstacles current researchers are facing in order to determine how to best support the field and encourage its success. The New Science of Metagenomics recommends the establishment of a "Global Metagenomics Initiative" comprising a small number of large-scale metagenomics projects as well as many medium- and small-scale projects to advance the technology and develop the standard practices needed to advance the field. The report also addresses database needs, methodological challenges, and the importance of interdisciplinary collaboration in supporting this new field.
Author : Paul Bridge,David Smith,Erko Stackebrandt
Publisher : CABI
Page : 366 pages
File Size : 55,7 Mb
Release : 2020-12-09
Category : Science
ISBN : 9781789244984
Methods in microbial systematics have developed and changed significantly in the last 40 years. This has resulted in considerable change in both the defining microbial species and the methods required to make reliable identifications. Developments in information technology have enabled ready access to vast amounts of new and historic data online. Establishing both the relevance, and the most appropriate use, of this data is now a major consideration when undertaking identifications and systematic research. This book provides some insights into how current methods and resources are being used in microbial systematics, together with some thoughts and suggestions as to how both methodologies and concepts may develop in the future.
Author : Andrea Genre,Katharina Pawlowski,Sabine Dagmar Zimmermann,Sergio Saia
Publisher : Frontiers Media SA
Page : 207 pages
File Size : 48,5 Mb
Release : 2023-03-15
Category : Science
ISBN : 9782832517499
Author : Elena I. Katsy
Publisher : Springer Science & Business Media
Page : 214 pages
File Size : 53,5 Mb
Release : 2014-01-30
Category : Science
ISBN : 9781461492030
Plasticity in Plant-Growth-Promoting and Phytopathogenic Bacteria brings together the expertise of a panel of researchers from around the world to provide comprehensive up-to-date reviews on the most interesting aspects of genomic and phenotypic plasticity in plant-beneficial and phytopathogenic bacteria. The book covers various topics, including common and specific features in the genomes of symbiotic, plant-growth-promoting, and phytopathogenic bacteria; regulation of conjugative plasmid transfer in rhizobia; genetic and phenotypic variability in plant-beneficial pseudomonads and azospirilla; genomic fluxes in phytopathogenic xanthomonads and pseudomonads; genome plasticity in obligate parasitic Phytoplasmas; comparative genomics of plant-growth-promoting and phytopathogenic Herbaspirillum species; horizontal gene transfer in planta and microevolution of plant-associated bacteria in the phytosphere. Plasticity in Plant-Growth-Promoting and Phytopathogenic Bacteria is recommended for all microbiology and plant biology laboratories.
Author : Dhananjaya Pratap Singh,Harikesh Bahadur Singh,Ratna Prabha
Publisher : Springer
Page : 657 pages
File Size : 52,9 Mb
Release : 2017-09-27
Category : Science
ISBN : 9789811058134
This books presents an updated compilation on fundamental interaction mechanisms of microbial communities with the plant roots and rhizosphere (belowground) and leaves and aerial parts (aboveground). Plant rhizopshere recruits its own microbial composition that survive there and help plants grow and develop better under biotic and abiotic conditions. Similar is the case with the beneficial microorganisms which are applied as inoculants with characteristic functions. The mechanism of plant-microbe interactions is interesting phenomenon in biological perspectives with numerous implications in the fields. The First volume focuses on the basic and fundamental mechanisms that have been worked out by the scientific communities taking into account different plant-microbe systems. This includes methods that decipher mechanisms at cellular, physiological, biochemical and molecular levels and the functions that are the final outcome of any beneficial or non-beneficial interactions in crop plants and microbes. Recent advances in this research area is covered in different book chapters that reflect the impact of microbial interactions on soil and plant health, dynamics of rhizosphere microbial communities, interaction mechanisms of microbes with multiple functional attributes, microbiome of contrasting crop production systems (organic vs conventional), mechanisms behind symbiotic and pathogenic interactions, endophytic (bacterial and fungal) interaction and benefits, rhizoplane and endosphere associations, signalling cascades and determinants in rhizosphere, quorum sensing in bacteria and impact on interaction, mycorrhizal interaction mechanisms, induced disease resistance and plant immunization, interaction mechanisms that suppress disease and belowground microbial crosstalk with plant rhizosphere. Methods based on multiphasic and multi-omics approaches were discussed in detail by the authors. Content-wise, the book offers an advanced account on various aspects of plant-microbe interactions and valuable implications in agro-ecological perspectives.
Author : Denis Faure,Dominique Joly
Publisher : Elsevier
Page : 174 pages
File Size : 52,8 Mb
Release : 2016-07-11
Category : Science
ISBN : 9780081010914
Bringing together the latest methodological and scientific progress in the various research areas in the field of Environmental Genomics, this book discusses the characterization of the structure and dynamics of life, the study of the evolution and adaptation of genes and genomes, the analysis of degraded and/or old DNA, and the functional and genomic ecology of populations and communities. It also considers access to the production and sharing of NGS data and the quality of this data. As the product of the collective discussion of the active French scientific community, the book presents not only the latest technologies in the development of new sequencing methods, but also the resulting issues, challenges and prospects, in order to identify those aspects with the greatest potential for modeling and exploring the function of ecosystems. Includes recent updates from the field of environmental genomics Provides details of advances of methods and perspectives of their use Contains a multidisciplinary overview of the environmental sciences including taxonomy, ecology, evolution, and diversity Focuses on the impact of recent technology advances in high-throughput sequencing
Author : Aurelio Ciancio,Corné M. J. Pieterse,Jesús Mercado-Blanco
Publisher : Frontiers Media SA
Page : 470 pages
File Size : 46,9 Mb
Release : 2019-11-28
Category : Electronic
ISBN : 9782889632008
The use of biocontrol agents and beneficial organisms for management of plant and pest diseases appears as an environment-friendly and economic procedure. However, this option is not always available, depending on the lack of knowledge on the mechanisms of natural regulation, locally effective. In this view, this eBook considers studies and experimental works illustrating a range of problems and solutions based on microbial resources, suitable for management of biotic stress factors. These examples show how detailed data and knowledge on the organisms involved are of paramount importance to achieve a sustainable and durable management capability.
Author : Vijay Tripathi,Pradeep Kumar,Pooja Tripathi,Amit Kishore
Publisher : Springer Nature
Page : 285 pages
File Size : 42,6 Mb
Release : 2019-11-05
Category : Science
ISBN : 9789811387395
In recent decades, significant advances in new methodologies like DNA sequencing and high-throughput sequencing have been used to identify microorganisms and monitor their interactions with different environments. Microbial genomics techniques are opening new approaches to microbiology by revealing how microorganisms affect human beings and the environment. This book covers four major areas: 1) Environmental microbial genomics, 2) Microbial genomics in human health, 3) Microbial genomics in crop improvement and plant health protection, and 4) Genome analysis of microbial pathogens. Within these areas, the topics addressed include: microbial genome diversity, evolution, and microbial genome sequencing; bioinformatics and microarray-based genomic technologies; functional genomics of bioremediation of soil and water from organic and inorganic pollutants and carbon management; functional genomics of microbial pathogens and relevant microorganisms; functional genomics of model microorganisms; and applied functional genomics. Given its scope, the book offers a comprehensive source of information on the latest applications of microorganisms and microbial genomics to enhance the sustainability of agriculture and the environment.
Author : Vivek Sharma,Richa Salwan
Publisher : Academic Press
Page : 454 pages
File Size : 54,6 Mb
Release : 2020-03-12
Category : Electronic
ISBN : 9780128184691
Molecular Aspects of Plant Beneficial Microbes in Agriculture explores their diverse interactions, including the pathogenic and symbiotic relationship which leads to either a decrease or increase in crop productivity. Focusing on these environmentally-friendly approaches, the book explores their potential in changing climatic conditions. It presents the exploration and regulation of beneficial microbes in offering sustainable and alternative solutions to the use of chemicals in agriculture. The beneficial microbes presented here are capable of contributing to nutrient balance, growth regulators, suppressing pathogens, orchestrating immune response and improving crop performance. The book also offers insights into the advancements in DNA technology and bioinformatic approaches which have provided in-depth knowledge about the molecular arsenal involved in mineral uptake, nitrogen fixation, growth promotion and biocontrol attributes.