Mathematical Models For Registration And Applications To Medical Imaging
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Mathematical Models for Registration and Applications to Medical Imaging by Otmar Scherzer Pdf
This volume gives a survey on mathematical and computational methods in image registration. During the last year sophisticated numerical models for registration and efficient numerical methods have been proposed. Many of them are contained in this volume. The book also summarizes the state-of-the-art in mathematical and computational methods in image registration. In addition, it covers some practical applications and new directions with industrial relevance in data processing.
Introduction to the Mathematics of Medical Imaging by Charles L. Epstein Pdf
At the heart of every medical imaging technology is a sophisticated mathematical model of the measurement process and an algorithm to reconstruct an image from the measured data. This book provides a firm foundation in the mathematical tools used to model the measurements and derive the reconstruction algorithms used in most imaging modalities in current use. In the process, it also covers many important analytic concepts and techniques used in Fourier analysis, integral equations, sampling theory, and noise analysis.This text uses X-ray computed tomography as a "pedagogical machine" to illustrate important ideas and incorporates extensive discussions of background material making the more advanced mathematical topics accessible to readers with a less formal mathematical education. The mathematical concepts are illuminated with over 200 illustrations and numerous exercises.New to the second edition are a chapter on magnetic resonance imaging (MRI), a revised section on the relationship between the continuum and discrete Fourier transforms, a new section on Grangreat's formula, an improved description of the gridding method, and a new section on noise analysis in MRI. Audience The book is appropriate for one- or two-semester courses at the advanced undergraduate or beginning graduate level on the mathematical foundations of modern medical imaging technologies. The text assumes an understanding of calculus, linear algebra, and basic mathematical analysis. Contents Preface to the Second Edition; Preface; How to Use This Book; Notational Conventions; Chapter 1: Measurements and Modeling; Chapter 2: Linear Models and Linear Equations; Chapter 3: A Basic Model for Tomography; Chapter 4: Introduction to the Fourier Transform; Chapter 5: Convolution; Chapter 6: The Radon Transform; Chapter 7: Introduction to Fourier Series; Chapter 8: Sampling; Chapter 9: Filters; Chapter 10: Implementing Shift Invariant Filters; Chapter 11: Reconstruction in X-Ray Tomography; Chapter 12: Imaging Artifacts in X-Ray Tomography; Chapter 13: Algebraic Reconstruction Techniques; Chapter 14: Magnetic Resonance Imaging; Chapter 15: Probability and Random Variables; Chapter 16: Applications of Probability; Chapter 17: Random Processes; Appendix A: Background Material; Appendix B: Basic Analysis; Index.
Multi-wave Medical Imaging: Mathematical Modelling And Imaging Reconstruction by Nguyen Loc Hoang Pdf
Super-Resolution imaging refers to modern techniques of achieving resolution below conventional limits. This book gives a comprehensive overview of mathematical and computational techniques used to achieve this, providing a solid foundation on which to develop the knowledge and skills needed for practical application of techniques. Split into five parts, the first looks at the mathematical and probabilistic tools needed, before moving on to description of different types of imaging; single-wave, anomaly, multi-wave and spectroscopic and nanoparticle. As an important contribution to the understanding of super-resolution techniques in biomedical imaging, this book is a useful resource for scientists and engineers in the fields of biomedical imaging and super-resolution, and is self-contained reference for any newcomers to these fields.
Multi-wave Medical Imaging by Habib Ammari,Josselin Garnier,Hyeonbae Kang,Laurent Seppecher Pdf
Super-Resolution imaging refers to modern techniques of achieving resolution below conventional limits. This book gives a comprehensive overview of mathematical and computational techniques used to achieve this, providing a solid foundation on which to develop the knowledge and skills needed for practical application of techniques. Split into five parts, the first looks at the mathematical and probabilistic tools needed, before moving on to description of different types of imaging; single-wave, anomaly, multi-wave and spectroscopic and nanoparticle. As an important contribution to the understanding of super-resolution techniques in biomedical imaging, this book is a useful resource for scientists and engineers in the fields of biomedical imaging and super-resolution, and is self-contained reference for any newcomers to these fields.
The Mathematics of Medical Imaging by Timothy G. Feeman Pdf
The basic mathematics of computerized tomography, the CT scan, are aptly presented for an audience of undergraduates in mathematics and engineering. Assuming no prior background in advanced mathematical analysis, topics such as the Fourier transform, sampling, and discrete approximation algorithms are introduced from scratch and are developed within the context of medical imaging. A chapter on magnetic resonance imaging focuses on manipulation of the Bloch equation, the system of differential equations that is the foundation of this important technology. Extending the ideas of the acclaimed first edition, new material has been added to render an even more accessible textbook for course usage. This edition includes new discussions of the Radon transform, the Dirac delta function and its role in X-ray imaging, Kacmarz's method and least squares approximation, spectral filtering, and more. Copious examples and exercises, several new computer-based exercises, and additional graphics have been added to further delineate concepts. The use of technology has been revamped throughout with the incorporation of the open source programming environment R to illustrate examples and composition of graphics. All R code is available as extra source material on SpringerLink. From the reviews of the first edition: "This book is valuable, for it addresses with care and rigor the relevance of a variety of mathematical topics t o a real-world problem. ...This book is well written. It serves its purpose of focusing a variety of mathematical topics onto a real-world application that is in its essence mathematics." -The Journal of Nuclear Medicine, Vol. 51 (12), December, 2010 "This new book by Timothy Feeman, truly intended to be a beginner's guide, makes the subject accessible to undergraduates with a working knowledge of multivariable calculus and some experience with vectors and matrix methods. ...author handles the material with clarity and grace..." -The Mathematical Association of America, February, 2010 "All theoretical material is illustrated with carefully selected examples which are easy to follow. ...I highly recommend this interesting, accessible to wide audience and well-written book dealing with mathematical techniques that support recent ground-breaking discoveries in biomedical technology both to students...and to specialists." -Zentralblatt MATH, Vol. 1191, 2010.
Medical Imaging by Troy Farncombe,Kris Iniewski Pdf
The book has two intentions. First, it assembles the latest research in the field of medical imaging technology in one place. Detailed descriptions of current state-of-the-art medical imaging systems (comprised of x-ray CT, MRI, ultrasound, and nuclear medicine) and data processing techniques are discussed. Information is provided that will give interested engineers and scientists a solid foundation from which to build with additional resources. Secondly, it exposes the reader to myriad applications that medical imaging technology has enabled.
The Mathematics of Medical Imaging by Timothy G. Feeman Pdf
The basic mathematics of computerized tomography, the CT scan, are aptly presented for an audience of undergraduates in mathematics and engineering. Assuming no prior background in advanced mathematical analysis, topics such as the Fourier transform, sampling, and discrete approximation algorithms are introduced from scratch and are developed within the context of medical imaging. A chapter on magnetic resonance imaging focuses on manipulation of the Bloch equation, the system of differential equations that is the foundation of this important technology. Extending the ideas of the acclaimed first edition, new material has been adeed to render an even more accessible textbook for course usage. This edition includes new discussions of the Radon transform, the Dirac delta function and its role in X-ray imaging, Kacmarz’s method and least squares approximation, spectral filtering, and more. Copious examples and exercises, new computer-based exercises, and additional graphics have been added to further delineate concepts. The use of technology has been revamped throughout with the incorporation of the open source programming environment R to illustrate examples and composition of graphics. All R code is available as extra source material on SpringerLink. From the reviews of the first edition: “This book is valuable, for it addresses with care and rigor the relevance of a variety of mathematical topics to a real-world problem. ...T his book is well written. It serves its purpose of focusing a variety of mathematical topics onto a real-world application that is in its essence mathematics.” –The Journal of Nuclear Medicine, Vol. 51 (12), December, 2010 “This new book by Timothy Feeman, truly intended to be a beginner’s guide, makes the subject accessible to undergraduates with a working knowledge of multivariable calculus and some experience with vectors and matrix methods. ...author handles the material with clarity and grace...” –The Mathematical Association of America, February, 2010
Handbook of Biomedical Image Analysis by David Wilson,Swamy Laxminarayan Pdf
Our goal is to develop automated methods for the segmentation of thr- dimensional biomedical images. Here, we describe the segmentation of c- focal microscopy images of bee brains (20 individuals) by registration to one or several atlas images. Registration is performed by a highly parallel imp- mentation of an entropy-based nonrigid registration algorithm using B-spline transformations. We present and evaluate different methods to solve the cor- spondence problem in atlas based registration. An image can be segmented by registering it to an individual atlas, an average atlas, or multiple atlases. When registering to multiple atlases, combining the individual segmentations into a ?nalsegmentationcanbeachievedbyatlasselection,ormulticlassi?erdecision fusion. Wedescribeallthesemethodsandevaluatethesegmentationaccuracies that they achieve by performing experiments with electronic phantoms as well as by comparing their outputs to a manual gold standard. The present work is focused on the mathematical and computational t- ory behind a technique for deformable image registration termed Hyperelastic Warping, and demonstration of the technique via applications in image regist- tion and strain measurement. The approach combines well-established prin- ples of nonlinear continuum mechanics with forces derived directly from thr- dimensional image data to achieve registration. The general approach does not require the de?nition of landmarks, ?ducials, or surfaces, although it can - commodate these if available. Representative problems demonstrate the robust and ?exible nature of the approach. Three-dimensional registration methods are introduced for registering MRI volumes of the pelvis and prostate. The chapter ?rst reviews the applications, xi xii Preface challenges, and previous methods of image registration in the prostate.
Medical Image Computing and Computer-Assisted Intervention - MICCAI 2008 by Dimitris Metaxas,Leon Axel,Gabor Fichtinger,Gabor Szekely Pdf
The 11th International Conference on Medical Imaging and Computer Assisted Intervention, MICCAI 2008, was held at the Helen and Martin Kimmel Center of New York University, New York City, USA on September 6–10, 2008. MICCAI is the premier international conference in this domain, with - depth papers on the multidisciplinary ?elds of biomedical image computing and analysis, computer assisted intervention and medical robotics. The conference brings together biological scientists, clinicians, computer scientists, engineers, mathematicians, physicists and other interested researchers and o?ers them a forum to exchange ideas in these exciting and rapidly growing ?elds. The conference is both very selective and very attractive: this year we - ceived a record number of 700 submissions from 34 countries and 6 continents, fromwhich258papers were selectedfor publication,whichcorrespondsto a s- cess rate of approximately 36%. Some interesting facts about the distribution of submitted and accepted papers are shown graphically at the end of this preface. The paper selection process this year was based on the following procedure, which included the introduction of several novelties over previous years. 1. A ProgramCommittee (PC) of 49 members was recruited by the Program Chairs,to getthenecessarybody ofexpertiseandgeographicalcoverage.All PC members agreed in advance to participate in the ?nal paper selection process. 2. Key words grouped in 7 categories were used to describe the content of the submissions and the expertise of the reviewers.
Riemannian Geometric Statistics in Medical Image Analysis by Xavier Pennec,Stefan Sommer,Tom Fletcher Pdf
Over the past 15 years, there has been a growing need in the medical image computing community for principled methods to process nonlinear geometric data. Riemannian geometry has emerged as one of the most powerful mathematical and computational frameworks for analyzing such data. Riemannian Geometric Statistics in Medical Image Analysis is a complete reference on statistics on Riemannian manifolds and more general nonlinear spaces with applications in medical image analysis. It provides an introduction to the core methodology followed by a presentation of state-of-the-art methods. Beyond medical image computing, the methods described in this book may also apply to other domains such as signal processing, computer vision, geometric deep learning, and other domains where statistics on geometric features appear. As such, the presented core methodology takes its place in the field of geometric statistics, the statistical analysis of data being elements of nonlinear geometric spaces. The foundational material and the advanced techniques presented in the later parts of the book can be useful in domains outside medical imaging and present important applications of geometric statistics methodology Content includes: The foundations of Riemannian geometric methods for statistics on manifolds with emphasis on concepts rather than on proofs Applications of statistics on manifolds and shape spaces in medical image computing Diffeomorphic deformations and their applications As the methods described apply to domains such as signal processing (radar signal processing and brain computer interaction), computer vision (object and face recognition), and other domains where statistics of geometric features appear, this book is suitable for researchers and graduate students in medical imaging, engineering and computer science. A complete reference covering both the foundations and state-of-the-art methods Edited and authored by leading researchers in the field Contains theory, examples, applications, and algorithms Gives an overview of current research challenges and future applications
Handbook of Mathematical Models and Algorithms in Computer Vision and Imaging by Ke Chen,Carola-Bibiane Schönlieb,Xue-Cheng Tai,Laurent Younes Pdf
This handbook gathers together the state of the art on mathematical models and algorithms for imaging and vision. Its emphasis lies on rigorous mathematical methods, which represent the optimal solutions to a class of imaging and vision problems, and on effective algorithms, which are necessary for the methods to be translated to practical use in various applications. Viewing discrete images as data sampled from functional surfaces enables the use of advanced tools from calculus, functions and calculus of variations, and nonlinear optimization, and provides the basis of high-resolution imaging through geometry and variational models. Besides, optimization naturally connects traditional model-driven approaches to the emerging data-driven approaches of machine and deep learning. No other framework can provide comparable accuracy and precision to imaging and vision. Written by leading researchers in imaging and vision, the chapters in this handbook all start with gentle introductions, which make this work accessible to graduate students. For newcomers to the field, the book provides a comprehensive and fast-track introduction to the content, to save time and get on with tackling new and emerging challenges. For researchers, exposure to the state of the art of research works leads to an overall view of the entire field so as to guide new research directions and avoid pitfalls in moving the field forward and looking into the next decades of imaging and information services. This work can greatly benefit graduate students, researchers, and practitioners in imaging and vision; applied mathematicians; medical imagers; engineers; and computer scientists.
Medical Image Computing and Computer-Assisted Intervention -- MICCAI 2009 by Guang-Zhong Yang,David J. Hawkes,Daniel Rueckert,Alison Noble,Chris Taylor Pdf
The two-volume set LNCS 5761 and LNCS 5762 constitute the refereed proceedings of the 12th International Conference on Medical Image Computing and Computer-Assisted Intervention, MICCAI 2009, held in London, UK, in September 2009. Based on rigorous peer reviews, the program committee carefully selected 259 revised papers from 804 submissions for presentation in two volumes. The first volume includes 125 papers divided in topical sections on cardiovascular image guided intervention and robotics; surgical navigation and tissue interaction; intra-operative imaging and endoscopic navigation; motion modelling and image formation; image registration; modelling and segmentation; image segmentation and classification; segmentation and atlas based techniques; neuroimage analysis; surgical navigation and robotics; image registration; and neuroimage analysis: structure and function.
Numerical Methods for Image Registration by Jan Modersitzki Pdf
Based on the author's lecture notes and research, this well-illustrated and comprehensive text is one of the first to provide an introduction to image registration with particular emphasis on numerical methods in medical imaging. Ideal for researchers in industry and academia, it is also a suitable study guide for graduate mathematicians, computer scientists, engineers, medical physicists, and radiologists. Image registration is utilised whenever information obtained from different viewpoints needs to be combined or compared and unwanted distortion needs to be eliminated. For example, CCTV images, ultrasound images, brain scan images, fingerprint and retinal scanning. Modersitzki's book provides a systematic introduction to the theoretical, practical, and numerical aspects of image registration, with special emphasis on medical applications. Various techniques are described, discussed and compared using numerous illustrations. The text starts with an introduction to the mathematical principles and the motivating example of the Human Neuroscanning Project whose aim is to build an atlas of the human brain through reconstructing essential information out of deformed images of sections of a prepared brain. The introduction is followed by coverage of parametric image registrations such as landmark based, principal axes based, and optimal affine linear registration. Basic distance measures like sum of squared differences, correlation, and mutual information are also discussed. The next section is devoted to state-of-the-art non-parametric image registrations where general variational based framework for image registration is presented and used to describe and compare well-known and new image registration techniques. Finally, efficient numerical schemes for the underlying partial differential equations are presented and discussed. This text treats the basic mathematical principles, including aspects from approximation theory, image processing, numerics, partial differential equations, and statistics, with a strong focus on numerical methods in image processing. Providing a systematic and general framework for image registration, the book not only presents state-of-the-art concepts but also summarises and classifies the numerous techniques to be found in the literature.
Brain Mapping: A Comprehensive Reference offers foundational information for students and researchers across neuroscience. With over 300 articles and a media rich environment, this resource provides exhaustive coverage of the methods and systems involved in brain mapping, fully links the data to disease (presenting side by side maps of healthy and diseased brains for direct comparisons), and offers data sets and fully annotated color images. Each entry is built on a layered approach of the content – basic information for those new to the area and more detailed material for experienced readers. Edited and authored by the leading experts in the field, this work offers the most reputable, easily searchable content with cross referencing across articles, a one-stop reference for students, researchers and teaching faculty. Broad overview of neuroimaging concepts with applications across the neurosciences and biomedical research Fully annotated color images and videos for best comprehension of concepts Layered content for readers of different levels of expertise Easily searchable entries for quick access of reputable information Live reference links to ScienceDirect, Scopus and PubMed
The Radon Transform and Medical Imaging by Peter Kuchment Pdf
This book surveys the main mathematical ideas and techniques behind some well-established imaging modalities such as X-ray CT and emission tomography, as well as a variety of newly developing coupled-physics or hybrid techniques, including thermoacoustic tomography. The Radon Transform and Medical Imaging emphasizes mathematical techniques and ideas arising across the spectrum of medical imaging modalities and explains important concepts concerning inversion, stability, incomplete data effects, the role of interior information, and other issues critical to all medical imaging methods. For nonexperts, the author provides appendices that cover background information on notation, Fourier analysis, geometric rays, and linear operators. The vast bibliography, with over 825 entries, directs readers to a wide array of additional information sources on medical imaging for further study.
