Metaheuristics For String Problems In Bio Informatics
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Metaheuristics for String Problems in Bio-informatics by Christian Blum,Paola Festa Pdf
So-called string problems are abundant in bioinformatics and computational biology. New optimization problems dealing with DNA or protein sequences are constantly arising and researchers are highly in need of efficient optimization techniques for solving them. One obstacle for optimization practitioners is the atypical nature of these problems which require an interdisciplinary approach in order to solve them efficiently and accurately.
Metaheuristics for String Problems in Bio-informatics by Christian Blum,Paola Festa Pdf
So-called string problems are abundant in bioinformatics and computational biology. New optimization problems dealing with DNA or protein sequences are constantly arising and researchers are highly in need of efficient optimization techniques for solving them. One obstacle for optimization practitioners is the atypical nature of these problems which require an interdisciplinary approach in order to solve them efficiently and accurately.
Learning and Intelligent Optimization by Roberto Battiti,Mauro Brunato,Ilias Kotsireas,Panos M. Pardalos Pdf
This book constitutes the thoroughly refereed post-conference proceedings of the 12th International Conference on Learning and Intelligent Optimization, LION 12, held in Kalamata, Greece, in June 2018. The 28 full papers and 12 short papers presented have been carefully reviewed and selected from 62 submissions. The papers explore the advanced research developments in such interconnected fields as mathematical programming, global optimization, machine learning, and artificial intelligence. Special focus is given to advanced ideas, technologies, methods, and applications in optimization and machine learning.
Integration of Constraint Programming, Artificial Intelligence, and Operations Research by Peter J. Stuckey Pdf
This volume LNCS 12735 constitutes the papers of the 18th International Conference on the Integration of Constraint Programming, Artificial Intelligence, and Operations Research, CPAIOR 2021, which was held in Vienna, Austria, in 2021. Due to the COVID-19 pandemic the conference was held online. The 30 regular papers presented were carefully reviewed and selected from a total of 75 submissions. The conference program included a Master Class on the topic "Explanation and Verification of Machine Learning Models".
Machine Learning, Optimization, and Data Science by Giuseppe Nicosia,Panos Pardalos,Renato Umeton,Giovanni Giuffrida,Vincenzo Sciacca Pdf
This book constitutes the post-conference proceedings of the 5th International Conference on Machine Learning, Optimization, and Data Science, LOD 2019, held in Siena, Italy, in September 2019. The 54 full papers presented were carefully reviewed and selected from 158 submissions. The papers cover topics in the field of machine learning, artificial intelligence, reinforcement learning, computational optimization and data science presenting a substantial array of ideas, technologies, algorithms, methods and applications.
Hybrid Metaheuristics by Maria José Blesa,Christian Blum,Günther Raidl,Andrea Roli,Michael Sampels Pdf
This book constitutes the refereed proceedings of the 7th International Workshop on Hybrid Metaheuristics, HM 2010, held in Vienna, Austria, in October 2010. The 14 revised full papers presented were carefully reviewed and selected from 29 submissions.
A unified view of metaheuristics This book provides a complete background on metaheuristics and shows readers how to design and implement efficient algorithms to solve complex optimization problems across a diverse range of applications, from networking and bioinformatics to engineering design, routing, and scheduling. It presents the main design questions for all families of metaheuristics and clearly illustrates how to implement the algorithms under a software framework to reuse both the design and code. Throughout the book, the key search components of metaheuristics are considered as a toolbox for: Designing efficient metaheuristics (e.g. local search, tabu search, simulated annealing, evolutionary algorithms, particle swarm optimization, scatter search, ant colonies, bee colonies, artificial immune systems) for optimization problems Designing efficient metaheuristics for multi-objective optimization problems Designing hybrid, parallel, and distributed metaheuristics Implementing metaheuristics on sequential and parallel machines Using many case studies and treating design and implementation independently, this book gives readers the skills necessary to solve large-scale optimization problems quickly and efficiently. It is a valuable reference for practicing engineers and researchers from diverse areas dealing with optimization or machine learning; and graduate students in computer science, operations research, control, engineering, business and management, and applied mathematics.
Hybrid Metaheuristics by Christian Blum,Günther R. Raidl Pdf
This book explains the most prominent and some promising new, general techniques that combine metaheuristics with other optimization methods. A first introductory chapter reviews the basic principles of local search, prominent metaheuristics, and tree search, dynamic programming, mixed integer linear programming, and constraint programming for combinatorial optimization purposes. The chapters that follow present five generally applicable hybridization strategies, with exemplary case studies on selected problems: incomplete solution representations and decoders; problem instance reduction; large neighborhood search; parallel non-independent construction of solutions within metaheuristics; and hybridization based on complete solution archives. The authors are among the leading researchers in the hybridization of metaheuristics with other techniques for optimization, and their work reflects the broad shift to problem-oriented rather than algorithm-oriented approaches, enabling faster and more effective implementation in real-life applications. This hybridization is not restricted to different variants of metaheuristics but includes, for example, the combination of mathematical programming, dynamic programming, or constraint programming with metaheuristics, reflecting cross-fertilization in fields such as optimization, algorithmics, mathematical modeling, operations research, statistics, and simulation. The book is a valuable introduction and reference for researchers and graduate students in these domains.
Hybrid Metaheuristics by Maria J. Blesa,Christian Blum,Stefan Voß Pdf
This book constitutes the refereed proceedings of the 9th International Workshop on Hybrid Metaheuristics, HM 2014, held in Hamburg, Germany, in June 2014. The 14 revised full papers presented were carefully reviewed and selected from 22 submissions. The selected papers cover both theoretical and experimental results, including new paradigmatic hybrid solvers and automatic design approaches as well as applications to logistics and public transport.
Bioinformatics and Phylogenetics by Tandy Warnow Pdf
This volume presents a compelling collection of state-of-the-art work in algorithmic computational biology, honoring the legacy of Professor Bernard M.E. Moret in this field. Reflecting the wide-ranging influences of Prof. Moret’s research, the coverage encompasses such areas as phylogenetic tree and network estimation, genome rearrangements, cancer phylogeny, species trees, divide-and-conquer strategies, and integer linear programming. Each self-contained chapter provides an introduction to a cutting-edge problem of particular computational and mathematical interest. Topics and features: addresses the challenges in developing accurate and efficient software for the NP-hard maximum likelihood phylogeny estimation problem; describes the inference of species trees, covering strategies to scale phylogeny estimation methods to large datasets, and the construction of taxonomic supertrees; discusses the inference of ultrametric distances from additive distance matrices, and the inference of ancestral genomes under genome rearrangement events; reviews different techniques for inferring evolutionary histories in cancer, from the use of chromosomal rearrangements to tumor phylogenetics approaches; examines problems in phylogenetic networks, including questions relating to discrete mathematics, and issues of statistical estimation; highlights how evolution can provide a framework within which to understand comparative and functional genomics; provides an introduction to Integer Linear Programming and its use in computational biology, including its use for solving the Traveling Salesman Problem. Offering an invaluable source of insights for computer scientists, applied mathematicians, and statisticians, this illuminating volume will also prove useful for graduate courses on computational biology and bioinformatics.
Handbook of Approximation Algorithms and Metaheuristics by Teofilo F. Gonzalez Pdf
Handbook of Approximation Algorithms and Metaheuristics, Second Edition reflects the tremendous growth in the field, over the past two decades. Through contributions from leading experts, this handbook provides a comprehensive introduction to the underlying theory and methodologies, as well as the various applications of approximation algorithms and metaheuristics. Volume 1 of this two-volume set deals primarily with methodologies and traditional applications. It includes restriction, relaxation, local ratio, approximation schemes, randomization, tabu search, evolutionary computation, local search, neural networks, and other metaheuristics. It also explores multi-objective optimization, reoptimization, sensitivity analysis, and stability. Traditional applications covered include: bin packing, multi-dimensional packing, Steiner trees, traveling salesperson, scheduling, and related problems. Volume 2 focuses on the contemporary and emerging applications of methodologies to problems in combinatorial optimization, computational geometry and graphs problems, as well as in large-scale and emerging application areas. It includes approximation algorithms and heuristics for clustering, networks (sensor and wireless), communication, bioinformatics search, streams, virtual communities, and more. About the Editor Teofilo F. Gonzalez is a professor emeritus of computer science at the University of California, Santa Barbara. He completed his Ph.D. in 1975 from the University of Minnesota. He taught at the University of Oklahoma, the Pennsylvania State University, and the University of Texas at Dallas, before joining the UCSB computer science faculty in 1984. He spent sabbatical leaves at the Monterrey Institute of Technology and Higher Education and Utrecht University. He is known for his highly cited pioneering research in the hardness of approximation; for his sublinear and best possible approximation algorithm for k-tMM clustering; for introducing the open-shop scheduling problem as well as algorithms for its solution that have found applications in numerous research areas; as well as for his research on problems in the areas of job scheduling, graph algorithms, computational geometry, message communication, wire routing, etc.
Advances and Trends in Artificial Intelligence. Artificial Intelligence Practices by Hamido Fujita,Ali Selamat,Jerry Chun-Wei Lin,Moonis Ali Pdf
This two-volume set of LNAI 12798 and 12799 constitutes the thoroughly refereed proceedings of the 34th International Conference on Industrial, Engineering and Other Applications of Applied Intelligent Systems, IEA/AIE 2021, held virtually and in Kuala Lumpur, Malaysia, in July 2021. The 87 full papers and 19 short papers presented were carefully reviewed and selected from 145 submissions. The IEA/AIE 2021 conference will continue the tradition of emphasizing on applications of applied intelligent systems to solve real-life problems in all areas. These areas include the following: Part I, Artificial Intelligence Practices: Knowledge discovery and pattern mining; artificial intelligence and machine learning; sematic, topology, and ontology models; medical and health-related applications; graphic and social network analysis; signal and bioinformatics processing; evolutionary computation; attack security; natural language and text processing; fuzzy inference and theory; and sensor and communication networks Part II, From Theory to Practice: Prediction and recommendation; data management, clustering and classification; robotics; knowledge based and decision support systems; multimedia applications; innovative applications of intelligent systems; CPS and industrial applications; defect, anomaly and intrusion detection; financial and supply chain applications; Bayesian networks; BigData and time series processing; and information retrieval and relation extraction
Optimization Approaches for Solving String Selection Problems by Elisa Pappalardo,Panos M. Pardalos,Giovanni Stracquadanio Pdf
Optimization Approaches for Solving String Selection Problems provides an overview of optimization methods for a wide class of genomics-related problems in relation to the string selection problems. This class of problems addresses the recognition of similar characteristics or differences within biological sequences. Specifically, this book considers a large class of problems, ranging from the closest string and substring problems, to the farthest string and substring problems, to the far from most string problem. Each problem includes a detailed description, highlighting both biological and mathematical features and presents state-of-the-art approaches. This Brief provides a quick introduction of optimization methods for string selection problems for young scientists and a detailed description of the mathematical and computational methods developed for experts in the field of optimization who want to deepen their understanding of the string selection problems. Researchers, practitioners and graduate students in the field of Computer Science, Operation Research, Mathematics, Computational Biology and Biomedicine will find this book useful.