Pan Genome Level Genotype And Phenotype Prediction Advances In Precision Agriculture

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Animal Genomics

Author : Bhanu P. Chowdhary
Publisher : S. Karger AG (Switzerland)
Page : 376 pages
File Size : 52,6 Mb
Release : 2003
Category : Medical
ISBN : STANFORD:36105114281491

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Animal Genomics by Bhanu P. Chowdhary Pdf

This publication provides an update on the current status of gene maps in different livestock and pet/companion animal species. The findings summarized in species specific commentaries and original articles testify the rapid advances made in the field of animal genomics. Of significant interest is the fact that current investigations are providing headways for two important and exciting research fronts: targeted high-resolution mapping leading to the application of genomic information in addressing questions of economic and biological significance in animals, and the initiation of whole genome sequencing projects for some of the animal species. Like in humans and mice, this will set the stage for a new level of research and real time complex analysis of the genomes of these species. Animal Genomics signifies the beginning of a new era in this field and celebrates the achievements of the past 20 years of genomics research. It will be of special interest to researchers involved in genome analysis - both gross chromosomal as well as molecular - in various animal species, and to comparative and evolutionary geneticists.

Multi-omics and Computational Biology in Horticultural Plants: From Genotype to Phenotype, Volume II

Author : Yunpeng Cao,Hui Song,Muhammad Abdullah,Xiaoxu Li,Muhammad Aamir Manzoor
Publisher : Frontiers Media SA
Page : 353 pages
File Size : 54,7 Mb
Release : 2024-02-13
Category : Science
ISBN : 9782832544709

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Multi-omics and Computational Biology in Horticultural Plants: From Genotype to Phenotype, Volume II by Yunpeng Cao,Hui Song,Muhammad Abdullah,Xiaoxu Li,Muhammad Aamir Manzoor Pdf

This Research Topic is part of the article collection series - Multi-omics and Computational Biology in Horticultural Plants: From Genotype to Phenotype. Horticultural plants play an important role for humans by providing herbal medicines, beverages, vegetables, fruits, and ornamentals. High-throughput technologies have revolutionised the time scale and power of detecting insights into physiological changes and biological mechanisms in plants. All sequencing data and tools have helped us better understand the evolutionary histories of horticultural plants and provide genotype and phenotype resources for molecular studies on economically important traits. The integration of these -omics technologies (e.g., genomics, transcriptomics, proteomics, metabolomics, lipidomics, ionomics, and redoxomics) is currently at the forefront of plant research. The genomes of horticultural plants are highly diverse and complex, often with a high degree of heterozygosity and polyploidy. Novel computational methods need to be developed to take advantage of state-of-the-art genomic technologies. As a result, the mining of multi-omics data and the development of new computational biology approaches for the reliable and efficient analysis of plant traits is necessary.

Plant Systems Biology

Author : Sacha Baginsky,Alisdair R. Fernie
Publisher : Springer Science & Business Media
Page : 358 pages
File Size : 47,5 Mb
Release : 2007-06-25
Category : Science
ISBN : 9783764374396

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Plant Systems Biology by Sacha Baginsky,Alisdair R. Fernie Pdf

This volume aims to provide a timely view of the state-of-the-art in systems biology. The editors take the opportunity to define systems biology as they and the contributing authors see it, and this will lay the groundwork for future studies. The volume is well-suited to both students and researchers interested in the methods of systems biology. Although the focus is on plant systems biology, the proposed material could be suitably applied to any organism.

The Barley Genome

Author : Nils Stein,Gary J. Muehlbauer
Publisher : Springer
Page : 394 pages
File Size : 52,9 Mb
Release : 2018-08-18
Category : Science
ISBN : 9783319925288

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The Barley Genome by Nils Stein,Gary J. Muehlbauer Pdf

This book presents an overview of the state-of-the-art in barley genome analysis, covering all aspects of sequencing the genome and translating this important information into new knowledge in basic and applied crop plant biology and new tools for research and crop improvement. Unlimited access to a high-quality reference sequence is removing one of the major constraints in basic and applied research. This book summarizes the advanced knowledge of the composition of the barley genome, its genes and the much larger non-coding part of the genome, and how this information facilitates studying the specific characteristics of barley. One of the oldest domesticated crops, barley is the small grain cereal species that is best adapted to the highest altitudes and latitudes, and it exhibits the greatest tolerance to most abiotic stresses. With comprehensive access to the genome sequence, barley’s importance as a genetic model in comparative studies on crop species like wheat, rye, oats and even rice is likely to increase.

Bioinformatics in Agriculture

Author : Pradeep Sharma,Dinesh Yadav,R.K. Gaur
Publisher : Academic Press
Page : 707 pages
File Size : 45,8 Mb
Release : 2022-04-28
Category : Technology & Engineering
ISBN : 9780323885997

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Bioinformatics in Agriculture by Pradeep Sharma,Dinesh Yadav,R.K. Gaur Pdf

Bioinformatics in Agriculture: Next Generation Sequencing Era is a comprehensive volume presenting an integrated research and development approach to the practical application of genomics to improve agricultural crops. Exploring both the theoretical and applied aspects of computational biology, and focusing on the innovation processes, the book highlights the increased productivity of a translational approach. Presented in four sections and including insights from experts from around the world, the book includes: Section I: Bioinformatics and Next Generation Sequencing Technologies; Section II: Omics Application; Section III: Data mining and Markers Discovery; Section IV: Artificial Intelligence and Agribots. Bioinformatics in Agriculture: Next Generation Sequencing Era explores deep sequencing, NGS, genomic, transcriptome analysis and multiplexing, highlighting practices forreducing time, cost, and effort for the analysis of gene as they are pooled, and sequenced. Readers will gain real-world information on computational biology, genomics, applied data mining, machine learning, and artificial intelligence. This book serves as a complete package for advanced undergraduate students, researchers, and scientists with an interest in bioinformatics. Discusses integral aspects of molecular biology and pivotal tool sfor molecular breeding Enables breeders to design cost-effective and efficient breeding strategies Provides examples ofinnovative genome-wide marker (SSR, SNP) discovery Explores both the theoretical and practical aspects of computational biology with focus on innovation processes Covers recent trends of bioinformatics and different tools and techniques

Genetically Engineered Crops

Author : National Academies of Sciences, Engineering, and Medicine,Division on Earth and Life Studies,Board on Agriculture and Natural Resources,Committee on Genetically Engineered Crops: Past Experience and Future Prospects
Publisher : National Academies Press
Page : 607 pages
File Size : 45,9 Mb
Release : 2017-01-28
Category : Science
ISBN : 9780309437387

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Genetically Engineered Crops by National Academies of Sciences, Engineering, and Medicine,Division on Earth and Life Studies,Board on Agriculture and Natural Resources,Committee on Genetically Engineered Crops: Past Experience and Future Prospects Pdf

Genetically engineered (GE) crops were first introduced commercially in the 1990s. After two decades of production, some groups and individuals remain critical of the technology based on their concerns about possible adverse effects on human health, the environment, and ethical considerations. At the same time, others are concerned that the technology is not reaching its potential to improve human health and the environment because of stringent regulations and reduced public funding to develop products offering more benefits to society. While the debate about these and other questions related to the genetic engineering techniques of the first 20 years goes on, emerging genetic-engineering technologies are adding new complexities to the conversation. Genetically Engineered Crops builds on previous related Academies reports published between 1987 and 2010 by undertaking a retrospective examination of the purported positive and adverse effects of GE crops and to anticipate what emerging genetic-engineering technologies hold for the future. This report indicates where there are uncertainties about the economic, agronomic, health, safety, or other impacts of GE crops and food, and makes recommendations to fill gaps in safety assessments, increase regulatory clarity, and improve innovations in and access to GE technology.

High-Throughput Crop Phenotyping

Author : Jianfeng Zhou,Henry T. Nguyen
Publisher : Springer Nature
Page : 249 pages
File Size : 50,5 Mb
Release : 2021-07-17
Category : Science
ISBN : 9783030737344

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High-Throughput Crop Phenotyping by Jianfeng Zhou,Henry T. Nguyen Pdf

This book provides an overview of the innovations in crop phenotyping using emerging technologies, i.e., high-throughput crop phenotyping technology, including its concept, importance, breakthrough and applications in different crops and environments. Emerging technologies in sensing, machine vision and high-performance computing are changing the world beyond our imagination. They are also becoming the most powerful driver of the innovation in agriculture technology, including crop breeding, genetics and management. It includes the state of the art of technologies in high-throughput phenotyping, including advanced sensors, automation systems, ground-based or aerial robotic systems. It also discusses the emerging technologies of big data processing and analytics, such as advanced machine learning and deep learning technologies based on high-performance computing infrastructure. The applications cover different organ levels (root, shoot and seed) of different crops (grains, soybean, maize, potato) at different growth environments (open field and controlled environments). With the contribution of more than 20 world-leading researchers in high-throughput crop phenotyping, the authors hope this book provides readers the needed information to understand the concept, gain the insides and create the innovation of high-throughput phenotyping technology.

Genomic Selection for Crop Improvement

Author : Rajeev K. Varshney,Manish Roorkiwal,Mark E. Sorrells
Publisher : Springer
Page : 258 pages
File Size : 44,6 Mb
Release : 2017-12-05
Category : Technology & Engineering
ISBN : 9783319631707

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Genomic Selection for Crop Improvement by Rajeev K. Varshney,Manish Roorkiwal,Mark E. Sorrells Pdf

Genomic Selection for Crop Improvement serves as handbook for users by providing basic as well as advanced understandings of genomic selection. This useful review explains germplasm use, phenotyping evaluation, marker genotyping methods, and statistical models involved in genomic selection. It also includes examples of ongoing activities of genomic selection for crop improvement and efforts initiated to deploy the genomic selection in some important crops. In order to understand the potential of GS breeding, it is high time to bring complete information in the form of a book that can serve as a ready reference for geneticist and plant breeders.

Human Genetics and Genomics

Author : Bruce R. Korf,Mira B. Irons
Publisher : John Wiley & Sons
Page : 280 pages
File Size : 44,6 Mb
Release : 2012-11-19
Category : Medical
ISBN : 9781118537664

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Human Genetics and Genomics by Bruce R. Korf,Mira B. Irons Pdf

This fourth edition of the best-selling textbook, Human Genetics and Genomics, clearly explains the key principles needed by medical and health sciences students, from the basis of molecular genetics, to clinical applications used in the treatment of both rare and common conditions. A newly expanded Part 1, Basic Principles of Human Genetics, focuses on introducing the reader to key concepts such as Mendelian principles, DNA replication and gene expression. Part 2, Genetics and Genomics in Medical Practice, uses case scenarios to help you engage with current genetic practice. Now featuring full-color diagrams, Human Genetics and Genomics has been rigorously updated to reflect today’s genetics teaching, and includes updated discussion of genetic risk assessment, “single gene” disorders and therapeutics. Key learning features include: Clinical snapshots to help relate science to practice ‘Hot topics’ boxes that focus on the latest developments in testing, assessment and treatment ‘Ethical issues’ boxes to prompt further thought and discussion on the implications of genetic developments ‘Sources of information’ boxes to assist with the practicalities of clinical research and information provision Self-assessment review questions in each chapter Accompanied by the Wiley E-Text digital edition (included in the price of the book), Human Genetics and Genomics is also fully supported by a suite of online resources at www.korfgenetics.com, including: Factsheets on 100 genetic disorders, ideal for study and exam preparation Interactive Multiple Choice Questions (MCQs) with feedback on all answers Links to online resources for further study Figures from the book available as PowerPoint slides, ideal for teaching purposes The perfect companion to the genetics component of both problem-based learning and integrated medical courses, Human Genetics and Genomics presents the ideal balance between the bio-molecular basis of genetics and clinical cases, and provides an invaluable overview for anyone wishing to engage with this fast-moving discipline.

Plant Breeding: Past, Present and Future

Author : John E. Bradshaw
Publisher : Springer
Page : 693 pages
File Size : 50,7 Mb
Release : 2016-03-08
Category : Science
ISBN : 9783319232850

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Plant Breeding: Past, Present and Future by John E. Bradshaw Pdf

This book aims to help plant breeders by reviewing past achievements, currently successful practices, and emerging methods and techniques. Theoretical considerations are also presented to strike the right balance between being as simple as possible but as complex as necessary. The United Nations predicts that the global human population will continue rising to 9.0 billion by 2050. World food production will need to increase between 70-100 per cent in just 40 years. First generation bio-fuels are also using crops and cropland to produce energy rather than food. In addition, land area used for agriculture may remain static or even decrease as a result of degradation and climate change, despite more land being theoretically available, unless crops can be bred which tolerate associated abiotic stresses. Lastly, it is unlikely that steps can be taken to mitigate all of the climate change predicted to occur by 2050, and beyond, and hence adaptation of farming systems and crop production will be required to reduce predicted negative effects on yields that will occur without crop adaptation. Substantial progress will therefore be required in bridging the yield gap between what is currently achieved per unit of land and what should be possible in future, with the best farming methods and best storage and transportation of food, given the availability of suitably adapted cultivars, including adaptation to climate change. My book is divided into four parts: Part I is an historical introduction; Part II deals with the origin of genetic variation by mutation and recombination of DNA; Part III explains how the mating system of a crop species determines the genetic structure of its landraces; Part IV considers the three complementary options for future progress: use of sexual reproduction in further conventional breeding, base broadening and introgression; mutation breeding; and genetically modified crops.

Genomics-enabled Triticeae Improvement

Author : Xue-Feng Ma,Peter Stephen Baenziger,Shuyu Liu,Xianchun Xia,Hakan Ozkan
Publisher : Frontiers Media SA
Page : 228 pages
File Size : 42,6 Mb
Release : 2022-04-07
Category : Science
ISBN : 9782889748907

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Genomics-enabled Triticeae Improvement by Xue-Feng Ma,Peter Stephen Baenziger,Shuyu Liu,Xianchun Xia,Hakan Ozkan Pdf

Plant Resistance to Viruses

Author : David Evered,Sara Harnett
Publisher : John Wiley & Sons
Page : 226 pages
File Size : 51,7 Mb
Release : 2008-04-30
Category : Science
ISBN : 9780470513576

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Plant Resistance to Viruses by David Evered,Sara Harnett Pdf

Concern about the environmental consequences of the widespread use of pesticides has increased, and evidence of pesticide-resistant virus vectors have continued to emerge. This volume presents a timely survey of the mechanisms of plant resistance and examines current developments in breeding for resistance, with particular emphasis on advances in genetic engineering which allow for the incorporation of viral genetic material into plants. Discusses the mechanisms of innate resistance in strains of tobacco, tomato, and cowpea; various aspects of induced resistance, including the characterization and roles of the pathogenesis-related proteins; antiviral substances and their comparison with interferon; and cross-protection between plant virus strains. Also presents several papers which evaluate the status of genetic engineering as it relates to breeding resistant plants. Among these are discussions of the potential use of plant viruses as gene vectors, gene coding for viral coat protein, satellite RNA, and antisense RNA, and practical issues such as the durability of resistant crop plants in the field.

Breeding for drought and nitrogen stress tolerance in maize: From theory to practice

Author : M. Bänzinger
Publisher : CIMMYT
Page : 69 pages
File Size : 45,8 Mb
Release : 2000
Category : Electronic
ISBN : 9789706480460

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Breeding for drought and nitrogen stress tolerance in maize: From theory to practice by M. Bänzinger Pdf

Introduction - why breed for drought and low N tolerance?; Conceptual framework - breeding; Conventional approaches to improving the drought and low N tolerance of maize; Conventional approaches challenged; The challenge of breeding for drought and low N tolerance; Maize under drought and low N stress; Conceptual framework - physiology; Water and the maize plant; Nitrogen and the maize plant; Maize under drought and low N stress - consequences for breeding; Stress management; Drought; Low N stress; Statistical designs and layout of experiments; Increasing the number of replicates; Improved statistical designs; Field layout; Border effects from alleys; Secondary traits; Why use secondary traits?; How do we decide on the value of secondary traits in a drought or low N breeding program?; Secondary traits that help to identify drought tolerance; Secondary traits that help to identify low N tolerance: Selection indices - Combining information on secondary traits with grain yield; Combining information from various experiments; Breeding strategies; Choice of germplasm; Breeding schemes; Biotechnology: potential and constraints for improving drought and low N tolerance; The role of the farmer in selection; What is farmer participatory research and why is it important?; What is new about farmer participatory research?; Participatory methodologies.