Plant Genotyping Ii

Author : Robert J. Henry
Publisher : CABI
Page : 295 pages
File Size : 54,6 Mb
Release : 2008
Category : Technology & Engineering
ISBN : 9781845933821

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Plant Genotyping II by Robert J. Henry Pdf

This book aims to describe some of the important recent developments in plant genotyping. It is based upon a second workshop held recently to review progress in this area. Recent developments focus on high- throughput methods and generally target single nucleotide polymorphism (SNP) discovery and analysis. The topics covered include: SNP discovery in plants; SNPs and their use in maize; rare SNP discovery with endonucleases; sequence polymorphisms in the flanking regions of microsatellite markers; SNP discovery by ecotilling using capillary electrophoresis; genotyping by allele-specific PCR; the MassARRAY system for plant genomics; mutation screening; nanotechnology (the future of cost-effective plant genotyping); functionally associated molecular genetic markers for temperate pasture plant improvement; genotyping for rice eating qualities; towards universal loci for plant genotyping; DNA banks as a resource for SNP genotyping; DNA extraction from plant tissue; future prospects for plant genotyping.

Author : Robert J. Henry
Publisher : CABI
Page : 352 pages
File Size : 54,6 Mb
Release : 2001-08-17
Category : Law
ISBN : 0851998933

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Plant Genotyping by Robert J. Henry Pdf

Plant genotyping, or DNA fingerprinting of plants, is a technology that has matured and is poised for widespread practical application in the fields of breeding, commerce and research. This book examines the technologies available and their application in the analysis of:Wild plant populationsGermplasm collections Plant breedingContributors include leading research workers in this field from North America, Europe and Australasia.

Author : Robert J. Henry
Publisher : CABI
Page : 297 pages
File Size : 47,9 Mb
Release : 2008
Category : Science
ISBN : 9781845933838

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Plant Genotyping II by Robert J. Henry Pdf

Describes some of the developments in the field of Plant Genotyping, focusing on single nucleotide polymorphism (SNPs). This book covers the discovery, analysis and uses of SNPs, and examines other approaches to plant genotyping.

Author : Henry R.J.
Publisher : Unknown
Page : 325 pages
File Size : 46,5 Mb
Release : 2005-01-01
Category : Electronic
ISBN : 8190232029

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Plant Genotyping: The Dna Fingerprinting Of Plants by Henry R.J. Pdf

Author : Yuri Shavrukov
Publisher : Springer Nature
Page : 464 pages
File Size : 45,8 Mb
Release : 2023-02-13
Category : Science
ISBN : 9781071630242

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Plant Genotyping by Yuri Shavrukov Pdf

This thorough volume presents a wide range of existing methods, from the very popular to the more exotic, in the area of plant genotyping. Many methods of plant genotyping were initially developed for medical research, but all genotyping methods, if they are to be successful, should be suitable for application across the full range of studies within plant biology, as seen in this collection. Plant genotyping methods herein are based on a variety of assessments, including DNA microarray, with its hundreds of thousands of simultaneous reactions, or separate individual studies of DNA sequencing and fragment analysis, PCR and qPCR, allele-specific molecular probes and primers, digestion with restriction endonucleases, microscopy and many others. Written for the highly successful Methods in Molecular Biology series, chapters include introductions to their respective topics, lists of the necessary materials and reagents, step-by-step and readily reproducible laboratory protocols, and tips on troubleshooting and avoiding known pitfalls. Authoritative and practical, Plant Genotyping: Methods and Protocols offers researchers the opportunity to update their knowledge and choose the most suitable method of plant genotyping for their chosen application.

Author : Jacqueline Batley
Publisher : Humana
Page : 0 pages
File Size : 43,5 Mb
Release : 2016-08-23
Category : Science
ISBN : 1493943677

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Plant Genotyping by Jacqueline Batley Pdf

The ability to produce vast amounts of DNA sequence data has enabled the discovery of molecular markers in model organisms, crops, as well as orphan species making genotyping the rate limiting factor, and this volume focuses on the different markers available and the low to high throughput genotyping of these markers. Given the diverse nature of some of these systems, an overview is provided on the identification of markers from sequence data, as well as data analysis with example applications once the genotyping data has been generated. Written in the successful Methods in Molecular Biology series format, chapters include introductions to their respective topics, lists of the necessary materials and reagents, step-by-step, readily reproducible protocols, and notes on troubleshooting and avoiding known pitfalls. Authoritative and easily accessible, Plant Genotyping: Methods and Protocols is aimed at plant molecular biologists, geneticists, plant breeders and ecologists who have a target question and need to know the most suitable markers and genotyping system to use.

Author : Thomas Lübberstedt,Rajeev Varshney
Publisher : Springer Science & Business Media
Page : 518 pages
File Size : 50,5 Mb
Release : 2013-02-28
Category : Science
ISBN : 9789400756878

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Diagnostics in Plant Breeding by Thomas Lübberstedt,Rajeev Varshney Pdf

“Diagnostics in Plant Breeding” is systematically organizing cutting-edge research reviews on the development and application of molecular tools for the prediction of plant performance. Given its significance for mankind and the available research resources, medical sciences are leading the area of molecular diagnostics, where DNA-based risk assessments for various diseases and biomarkers to determine their onset become increasingly available. So far, most research in plant genomics has been directed towards understanding the molecular basis of biological processes or phenotypic traits. From a plant breeding perspective, however, the main interest is in predicting optimal genotypes based on molecular information for more time- and cost-efficient breeding schemes. It is anticipated that progress in plant genomics and in particular sequence technology made recently will shift the focus from “explanatory” to “predictive” in crop science. This book assembles chapters on all areas relevant to development and application of predictive molecular tools in plant breeding by leading authorties in the respective areas.

Author : Fikret Isik,James Holland,Christian Maltecca
Publisher : Springer
Page : 400 pages
File Size : 42,9 Mb
Release : 2017-09-09
Category : Science
ISBN : 9783319551777

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Genetic Data Analysis for Plant and Animal Breeding by Fikret Isik,James Holland,Christian Maltecca Pdf

This book fills the gap between textbooks of quantitative genetic theory, and software manuals that provide details on analytical methods but little context or perspective on which methods may be most appropriate for a particular application. Accordingly this book is composed of two sections. The first section (Chapters 1 to 8) covers topics of classical phenotypic data analysis for prediction of breeding values in animal and plant breeding programs. In the second section (Chapters 9 to 13) we provide the concept and overall review of available tools for using DNA markers for predictions of genetic merits in breeding populations. With advances in DNA sequencing technologies, genomic data, especially single nucleotide polymorphism (SNP) markers, have become available for animal and plant breeding programs in recent years. Analysis of DNA markers for prediction of genetic merit is a relatively new and active research area. The algorithms and software to implement these algorithms are changing rapidly. This section represents state-of-the-art knowledge on the tools and technologies available for genetic analysis of plants and animals. However, readers should be aware that the methods or statistical packages covered here may not be available or they might be out of date in a few years. Ultimately the book is intended for professional breeders interested in utilizing these tools and approaches in their breeding programs. Lastly, we anticipate the usage of this volume for advanced level graduate courses in agricultural and breeding courses.

Author : Humira Sonah,Vinod Goyal,S. M. Shivaraj,Rupesh K. Deshmukh
Publisher : John Wiley & Sons
Page : 404 pages
File Size : 48,9 Mb
Release : 2022-03-29
Category : Science
ISBN : 9781119745679

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Genotyping by Sequencing for Crop Improvement by Humira Sonah,Vinod Goyal,S. M. Shivaraj,Rupesh K. Deshmukh Pdf

OGENOTYPING BY SEQUENCING FOR CROP IMPROVEMENT A thoroughly up-to-date exploration of genotyping-by-sequencing technologies and related methods in plant science In Genotyping by Sequencing for Crop Improvement, a team of distinguished researchers delivers an in-depth and current exploration of the latest advances in genotyping-by-sequencing (GBS) methods, the statistical approaches used to analyze GBS data, and its applications, including quantitative trait loci (QTL) mapping, genome-wide association studies (GWAS), and genomic selection (GS) in crop improvement. This edited volume includes insightful contributions on a variety of relevant topics, like advanced molecular markers, high-throughput genotyping platforms, whole genome resequencing, QTL mapping with advanced mapping populations, analytical pipelines for GBS analysis, and more. The distinguished contributors explore traditional and advanced markers used in plant genotyping in extensive detail, and advanced genotyping platforms that cater to unique research purposes are discussed, as is the whole-genome resequencing (WGR) methodology. The included chapters also examine the applications of these technologies in several different crop categories, including cereals, pulses, oilseeds, and commercial crops. Genotyping by Sequencing for Crop Improvement also offers: A thorough introduction to molecular marker techniques and recent advancements in the technology Comprehensive explorations of the genotyping of seeds while preserving their viability, as well as advances in genomic selection Practical discussions of opportunities and challenges relating to high throughput genotyping in polyploid crops In-depth examinations of recent advances and applications of GBS, GWAS, and GS in cereals, pulses, oilseeds, millets, and commercial crops Perfect for practicing plant scientists with an interest in genotyping-by-sequencing technology, Genotyping by Sequencing for Crop Improvement will also earn a place in the libraries of researchers and students seeking a one-stop reference on the foundational aspects of – and recent advances in – genotyping-by-sequencing, genome-wide association studies, and genomic selection.

Author : Stefan J. White,Stuart Cantsilieris
Publisher : Humana
Page : 0 pages
File Size : 50,8 Mb
Release : 2016-11-08
Category : Medical
ISBN : 1493964402

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Genotyping by Stefan J. White,Stuart Cantsilieris Pdf

This volume explores a broad range of different genotyping techniques. Genotyping: Methods and Protocols consists of chapters that cover numerous topics such as: an overview of multiplexed microsatellite analysis; High Resolution Melt analysis and TaqMan-based assays; in situ analysis of variants in single RNA molecules; the MassARRAY system and Molecular Inversion Probes; Pulsed Field Gel Electrophoresis, Paralogue Ratio Test, and Multiplex Ligation-Dependent Probe Amplification; long-range PCR combined with PacBio sequencing; Targeted Locus Amplification; Multilocus Sequence Typing and rapid SNP detection with pyrosequencing; and genotyping-by-sequencing for plant analysis. Finally, the volume concludes with a summary of pertinent points to describe genetic variation. Written in the highly successful Methods in Molecular Biology series format, chapters include introductions to their respective topics, lists of the necessary materials and reagents, step-by-step, readily reproducible laboratory protocols, and tips on troubleshooting and avoiding known pitfalls. Thorough and practical, Genotyping: Methods and Protocols is a valuable resource for anyone interested in learning more about the diverse field of genotyping.

Author : Yuri Shavrukov,Patricio Hinrichsen ,Satoshi Watanabe
Publisher : Frontiers Media SA
Page : 201 pages
File Size : 53,9 Mb
Release : 2024-05-09
Category : Science
ISBN : 9782832548912

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Plant Genotyping: From Traditional Markers to Modern Technologies by Yuri Shavrukov,Patricio Hinrichsen ,Satoshi Watanabe Pdf

In contrast to the external traits of plants, we cannot directly see the genotypes that comprise the underlying set of genetic material encoding these phenotypic traits. To make genotypes accessible for research and further understanding, various genotyping methods are used. Plant genotyping began with relatively simple and elementary molecular markers, like microsatellites or SSR (Simple Sequence Repeats), which were then followed by DNA sequencing and fragment analysis, PCR and qPCR, allele-specific molecular probes and primers, and now today’s modern and advanced microchip-DNA technology involving hundreds and thousands of reactions simultaneously.

Author : Jeffrey Bennetzen,Sherry Flint-Garcia,Candice Hirsch,Roberto Tuberosa
Publisher : Springer
Page : 390 pages
File Size : 41,5 Mb
Release : 2018-11-24
Category : Science
ISBN : 9783319974279

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The Maize Genome by Jeffrey Bennetzen,Sherry Flint-Garcia,Candice Hirsch,Roberto Tuberosa Pdf

This book discusses advances in our understanding of the structure and function of the maize genome since publication of the original B73 reference genome in 2009, and the progress in translating this knowledge into basic biology and trait improvement. Maize is an extremely important crop, providing a large proportion of the world’s human caloric intake and animal feed, and serving as a model species for basic and applied research. The exceptionally high level of genetic diversity within maize presents opportunities and challenges in all aspects of maize genetics, from sequencing and genotyping to linking genotypes to phenotypes. Topics covered in this timely book range from (i) genome sequencing and genotyping techniques, (ii) genome features such as centromeres and epigenetic regulation, (iii) tools and resources available for trait genomics, to (iv) applications of allele mining and genomics-assisted breeding. This book is a valuable resource for researchers and students interested in maize genetics and genomics.

Author : Manjit S. Kang
Publisher : CABI
Page : 433 pages
File Size : 46,7 Mb
Release : 2020-04-01
Category : Science
ISBN : 9781789240214

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Quantitative Genetics, Genomics and Plant Breeding, 2nd Edition by Manjit S. Kang Pdf

This book presents state-of-the-art, authoritative chapters on contemporary issues in the broad areas of quantitative genetics, genomics and plant breeding. Section 1 (Chapters 2 to 12) emphasizes the application of genomics, and genome and epigenome editing techniques, in plant breeding; bioinformatics; quantitative trait loci mapping; and the latest approaches of examining and exploiting genotype-environment interactions. Section 2 (Chapters 13 to 20) represents the intersection of breeding, genetics and genomics. This section describes the use of cutting-edge molecular breeding and quantitative genetics techniques in wheat, rice, maize, root and tuber crops and pearl millet. Overall, the book focuses on using genomic information to help evaluate traits that can combat biotic/abiotic stresses, genome-wide association mapping, high-throughput genotyping/phenotyping, biofortification, use of big data, orphan crops, and gene editing techniques. The examples featured are taken from across crop science research and cover a wide geographical base.

Author : Robert J. Henry
Publisher : Nelson Thornes
Page : 284 pages
File Size : 47,8 Mb
Release : 1997
Category : Science
ISBN : 0412732203

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Practical Applications of Plant Molecular Biology by Robert J. Henry Pdf

Practical Applications of Plant Molecular Biology is an important new title which covers the major techniques and how they are applied to a range of vitally important areas. Divided broadly into four sections, this book covers key subjects including the identification of plants and plant pathogens using molecular techniques, the estimation of genetic variation in plants, the use of molecular markers in plant improvement and the use of plant transformation techniques for the improvement of quality and the introduction of resistance. Also included is a comprehensive listing and description of the most frequently used techniques and a set of appendices covering useful topics of reference for the reader. All undergraduates studying plant sciences, molecular biology, biotechnology and agricultural sciences would benefit from having access to this title as would those studying for upper-level Masters courses concentrating on the disciplines covered. This book also provides an invaluable source of reference for professionals in agriculture, plant breeding, crop protection and improvement, biotechnology and molecular biology.

Author : A.N.M. Alamgir
Publisher : Springer
Page : 826 pages
File Size : 41,7 Mb
Release : 2018-06-23
Category : Medical
ISBN : 9783319923871

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Therapeutic Use of Medicinal Plants and their Extracts: Volume 2 by A.N.M. Alamgir Pdf

This book starts with a general introduction to phytochemistry, followed by chapters on plant constituents, their origins and chemistry, but also discussing animal-, microorganism- and mineral-based drugs. Further chapters cover vitamins, food additives and excipients as well as xenobiotics and poisons. The book also explores the herbal approach to disease management and molecular pharmacognosy and introduces methods of qualitative and quantitative analysis of plant constituents. Phytochemicals are classified as primary (e.g. carbohydrates, lipids, amino acid derivations, etc.) or secondary (e.g. alkaloids, terpenes and terpenoids, phenolic compounds, glycosides, etc.) metabolites according to their metabolic route of origin, chemical structure and function. A wide variety of primary and secondary phytochemicals are present in medicinal plants, some of which are active phytomedicines and some of which are pharmaceutical excipients.