Reproducible Research With R And R Studio

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Reproducible Research with R and RStudio

Christopher Gandrud
Reproducible Research with R and RStudio Book PDF

Author : Christopher Gandrud
Publisher : CRC Press
Page : 299 pages
File Size : 52,9 Mb
Release : 2020-02-21
Category : Business & Economics
ISBN : 9780429629594

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Reproducible Research with R and RStudio by Christopher Gandrud Pdf

Praise for previous editions: "Gandrud has written a great outline of how a fully reproducible research project should look from start to finish, with brief explanations of each tool that he uses along the way... Advanced undergraduate students in mathematics, statistics, and similar fields as well as students just beginning their graduate studies would benefit the most from reading this book. Many more experienced R users or second-year graduate students might find themselves thinking, ‘I wish I’d read this book at the start of my studies, when I was first learning R!’...This book could be used as the main text for a class on reproducible research ..." (The American Statistician) Reproducible Research with R and R Studio, Third Edition brings together the skills and tools needed for doing and presenting computational research. Using straightforward examples, the book takes you through an entire reproducible research workflow. This practical workflow enables you to gather and analyze data as well as dynamically present results in print and on the web. Supplementary materials and example are available on the author’s website. New to the Third Edition Updated package recommendations, examples, URLs, and removed technologies no longer in regular use. More advanced R Markdown (and less LaTeX) in discussions of markup languages and examples. Stronger focus on reproducible working directory tools. Updated discussion of cloud storage services and persistent reproducible material citation. Added discussion of Jupyter notebooks and reproducible practices in industry. Examples of data manipulation with Tidyverse tibbles (in addition to standard data frames) and pivot_longer() and pivot_wider() functions for pivoting data. Features Incorporates the most important advances that have been developed since the editions were published Describes a complete reproducible research workflow, from data gathering to the presentation of results Shows how to automatically generate tables and figures using R Includes instructions on formatting a presentation document via markup languages Discusses cloud storage and versioning services, particularly Github Explains how to use Unix-like shell programs for working with large research projects

Reproducible Research with R and R Studio

Christopher Gandrud
Reproducible Research with R and R Studio Book PDF

Author : Christopher Gandrud
Publisher : CRC Press
Page : 334 pages
File Size : 51,7 Mb
Release : 2018-09-03
Category : Business & Economics
ISBN : 9781315360720

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Reproducible Research with R and R Studio by Christopher Gandrud Pdf

All the Tools for Gathering and Analyzing Data and Presenting Results Reproducible Research with R and RStudio, Second Edition brings together the skills and tools needed for doing and presenting computational research. Using straightforward examples, the book takes you through an entire reproducible research workflow. This practical workflow enables you to gather and analyze data as well as dynamically present results in print and on the web. New to the Second Edition The rmarkdown package that allows you to create reproducible research documents in PDF, HTML, and Microsoft Word formats using the simple and intuitive Markdown syntax Improvements to RStudio’s interface and capabilities, such as its new tools for handling R Markdown documents Expanded knitr R code chunk capabilities The kable function in the knitr package and the texreg package for dynamically creating tables to present your data and statistical results An improved discussion of file organization, enabling you to take full advantage of relative file paths so that your documents are more easily reproducible across computers and systems The dplyr, magrittr, and tidyr packages for fast data manipulation Numerous modifications to R syntax in user-created packages Changes to GitHub’s and Dropbox’s interfaces Create Dynamic and Highly Reproducible Research This updated book provides all the tools to combine your research with the presentation of your findings. It saves you time searching for information so that you can spend more time actually addressing your research questions. Supplementary files used for the examples and a reproducible research project are available on the author’s website.

R for Data Science

Hadley Wickham,Garrett Grolemund
R for Data Science Book PDF

Author : Hadley Wickham,Garrett Grolemund
Publisher : "O'Reilly Media, Inc."
Page : 521 pages
File Size : 47,6 Mb
Release : 2016-12-12
Category : Computers
ISBN : 9781491910368

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R for Data Science by Hadley Wickham,Garrett Grolemund Pdf

Learn how to use R to turn raw data into insight, knowledge, and understanding. This book introduces you to R, RStudio, and the tidyverse, a collection of R packages designed to work together to make data science fast, fluent, and fun. Suitable for readers with no previous programming experience, R for Data Science is designed to get you doing data science as quickly as possible. Authors Hadley Wickham and Garrett Grolemund guide you through the steps of importing, wrangling, exploring, and modeling your data and communicating the results. You'll get a complete, big-picture understanding of the data science cycle, along with basic tools you need to manage the details. Each section of the book is paired with exercises to help you practice what you've learned along the way. You'll learn how to: Wrangle—transform your datasets into a form convenient for analysis Program—learn powerful R tools for solving data problems with greater clarity and ease Explore—examine your data, generate hypotheses, and quickly test them Model—provide a low-dimensional summary that captures true "signals" in your dataset Communicate—learn R Markdown for integrating prose, code, and results

Statistical Inference via Data Science: A ModernDive into R and the Tidyverse

Chester Ismay,Albert Y. Kim
Statistical Inference via Data Science A ModernDive into R and the Tidyverse Book PDF

Author : Chester Ismay,Albert Y. Kim
Publisher : CRC Press
Page : 461 pages
File Size : 49,7 Mb
Release : 2019-12-23
Category : Mathematics
ISBN : 9781000763461

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Statistical Inference via Data Science: A ModernDive into R and the Tidyverse by Chester Ismay,Albert Y. Kim Pdf

Statistical Inference via Data Science: A ModernDive into R and the Tidyverse provides a pathway for learning about statistical inference using data science tools widely used in industry, academia, and government. It introduces the tidyverse suite of R packages, including the ggplot2 package for data visualization, and the dplyr package for data wrangling. After equipping readers with just enough of these data science tools to perform effective exploratory data analyses, the book covers traditional introductory statistics topics like confidence intervals, hypothesis testing, and multiple regression modeling, while focusing on visualization throughout. Features: ● Assumes minimal prerequisites, notably, no prior calculus nor coding experience ● Motivates theory using real-world data, including all domestic flights leaving New York City in 2013, the Gapminder project, and the data journalism website, FiveThirtyEight.com ● Centers on simulation-based approaches to statistical inference rather than mathematical formulas ● Uses the infer package for "tidy" and transparent statistical inference to construct confidence intervals and conduct hypothesis tests via the bootstrap and permutation methods ● Provides all code and output embedded directly in the text; also available in the online version at moderndive.com This book is intended for individuals who would like to simultaneously start developing their data science toolbox and start learning about the inferential and modeling tools used in much of modern-day research. The book can be used in methods and data science courses and first courses in statistics, at both the undergraduate and graduate levels.

Reproducible Research with R and R Studio

Christopher Gandrud
Reproducible Research with R and R Studio Book PDF

Author : Christopher Gandrud
Publisher : CRC Press
Page : 306 pages
File Size : 52,6 Mb
Release : 2013-07-15
Category : Mathematics
ISBN : 9781466572850

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Reproducible Research with R and R Studio by Christopher Gandrud Pdf

Bringing together computational research tools in one accessible source, Reproducible Research with R and RStudio guides you in creating dynamic and highly reproducible research. Suitable for researchers in any quantitative empirical discipline, it presents practical tools for data collection, data analysis, and the presentation of results.With str

R Markdown

Yihui Xie,J.J. Allaire,Garrett Grolemund
R Markdown Book PDF

Author : Yihui Xie,J.J. Allaire,Garrett Grolemund
Publisher : CRC Press
Page : 323 pages
File Size : 51,9 Mb
Release : 2018-07-27
Category : Mathematics
ISBN : 9780429782961

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R Markdown by Yihui Xie,J.J. Allaire,Garrett Grolemund Pdf

R Markdown: The Definitive Guide is the first official book authored by the core R Markdown developers that provides a comprehensive and accurate reference to the R Markdown ecosystem. With R Markdown, you can easily create reproducible data analysis reports, presentations, dashboards, interactive applications, books, dissertations, websites, and journal articles, while enjoying the simplicity of Markdown and the great power of R and other languages. In this book, you will learn Basics: Syntax of Markdown and R code chunks, how to generate figures and tables, and how to use other computing languages Built-in output formats of R Markdown: PDF/HTML/Word/RTF/Markdown documents and ioslides/Slidy/Beamer/PowerPoint presentations Extensions and applications: Dashboards, Tufte handouts, xaringan/reveal.js presentations, websites, books, journal articles, and interactive tutorials Advanced topics: Parameterized reports, HTML widgets, document templates, custom output formats, and Shiny documents. Yihui Xie is a software engineer at RStudio. He has authored and co-authored several R packages, including knitr, rmarkdown, bookdown, blogdown, shiny, xaringan, and animation. He has published three other books, Dynamic Documents with R and knitr, bookdown: Authoring Books and Technical Documents with R Markdown, and blogdown: Creating Websites with R Markdown. J.J. Allaire is the founder of RStudio and the creator of the RStudio IDE. He is an author of several packages in the R Markdown ecosystem including rmarkdown, flexdashboard, learnr, and radix. Garrett Grolemund is the co-author of R for Data Science and author of Hands-On Programming with R. He wrote the lubridate R package and works for RStudio as an advocate who trains engineers to do data science with R and the Tidyverse.

Introduction to Data Science

Rafael A. Irizarry
Introduction to Data Science Book PDF

Author : Rafael A. Irizarry
Publisher : CRC Press
Page : 794 pages
File Size : 49,7 Mb
Release : 2019-11-20
Category : Mathematics
ISBN : 9781000708035

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Introduction to Data Science by Rafael A. Irizarry Pdf

Introduction to Data Science: Data Analysis and Prediction Algorithms with R introduces concepts and skills that can help you tackle real-world data analysis challenges. It covers concepts from probability, statistical inference, linear regression, and machine learning. It also helps you develop skills such as R programming, data wrangling, data visualization, predictive algorithm building, file organization with UNIX/Linux shell, version control with Git and GitHub, and reproducible document preparation. This book is a textbook for a first course in data science. No previous knowledge of R is necessary, although some experience with programming may be helpful. The book is divided into six parts: R, data visualization, statistics with R, data wrangling, machine learning, and productivity tools. Each part has several chapters meant to be presented as one lecture. The author uses motivating case studies that realistically mimic a data scientist’s experience. He starts by asking specific questions and answers these through data analysis so concepts are learned as a means to answering the questions. Examples of the case studies included are: US murder rates by state, self-reported student heights, trends in world health and economics, the impact of vaccines on infectious disease rates, the financial crisis of 2007-2008, election forecasting, building a baseball team, image processing of hand-written digits, and movie recommendation systems. The statistical concepts used to answer the case study questions are only briefly introduced, so complementing with a probability and statistics textbook is highly recommended for in-depth understanding of these concepts. If you read and understand the chapters and complete the exercises, you will be prepared to learn the more advanced concepts and skills needed to become an expert.

Geocomputation with R

Robin Lovelace,Jakub Nowosad,Jannes Muenchow
Geocomputation with R Book PDF

Author : Robin Lovelace,Jakub Nowosad,Jannes Muenchow
Publisher : CRC Press
Page : 335 pages
File Size : 49,7 Mb
Release : 2019-03-22
Category : Mathematics
ISBN : 9781351396905

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Geocomputation with R by Robin Lovelace,Jakub Nowosad,Jannes Muenchow Pdf

Geocomputation with R is for people who want to analyze, visualize and model geographic data with open source software. It is based on R, a statistical programming language that has powerful data processing, visualization, and geospatial capabilities. The book equips you with the knowledge and skills to tackle a wide range of issues manifested in geographic data, including those with scientific, societal, and environmental implications. This book will interest people from many backgrounds, especially Geographic Information Systems (GIS) users interested in applying their domain-specific knowledge in a powerful open source language for data science, and R users interested in extending their skills to handle spatial data. The book is divided into three parts: (I) Foundations, aimed at getting you up-to-speed with geographic data in R, (II) extensions, which covers advanced techniques, and (III) applications to real-world problems. The chapters cover progressively more advanced topics, with early chapters providing strong foundations on which the later chapters build. Part I describes the nature of spatial datasets in R and methods for manipulating them. It also covers geographic data import/export and transforming coordinate reference systems. Part II represents methods that build on these foundations. It covers advanced map making (including web mapping), "bridges" to GIS, sharing reproducible code, and how to do cross-validation in the presence of spatial autocorrelation. Part III applies the knowledge gained to tackle real-world problems, including representing and modeling transport systems, finding optimal locations for stores or services, and ecological modeling. Exercises at the end of each chapter give you the skills needed to tackle a range of geospatial problems. Solutions for each chapter and supplementary materials providing extended examples are available at https://geocompr.github.io/geocompkg/articles/. Dr. Robin Lovelace is a University Academic Fellow at the University of Leeds, where he has taught R for geographic research over many years, with a focus on transport systems. Dr. Jakub Nowosad is an Assistant Professor in the Department of Geoinformation at the Adam Mickiewicz University in Poznan, where his focus is on the analysis of large datasets to understand environmental processes. Dr. Jannes Muenchow is a Postdoctoral Researcher in the GIScience Department at the University of Jena, where he develops and teaches a range of geographic methods, with a focus on ecological modeling, statistical geocomputing, and predictive mapping. All three are active developers and work on a number of R packages, including stplanr, sabre, and RQGIS.

Advanced R

Hadley Wickham
Advanced R Book PDF

Author : Hadley Wickham
Publisher : CRC Press
Page : 476 pages
File Size : 55,6 Mb
Release : 2015-09-15
Category : Mathematics
ISBN : 9781498759809

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Advanced R by Hadley Wickham Pdf

An Essential Reference for Intermediate and Advanced R Programmers Advanced R presents useful tools and techniques for attacking many types of R programming problems, helping you avoid mistakes and dead ends. With more than ten years of experience programming in R, the author illustrates the elegance, beauty, and flexibility at the heart of R. The book develops the necessary skills to produce quality code that can be used in a variety of circumstances. You will learn: The fundamentals of R, including standard data types and functions Functional programming as a useful framework for solving wide classes of problems The positives and negatives of metaprogramming How to write fast, memory-efficient code This book not only helps current R users become R programmers but also shows existing programmers what’s special about R. Intermediate R programmers can dive deeper into R and learn new strategies for solving diverse problems while programmers from other languages can learn the details of R and understand why R works the way it does.

An R Companion to Applied Regression

John Fox,Sanford Weisberg
An R Companion to Applied Regression Book PDF

Author : John Fox,Sanford Weisberg
Publisher : SAGE Publications
Page : 505 pages
File Size : 42,6 Mb
Release : 2018-09-27
Category : Social Science
ISBN : 9781544336459

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An R Companion to Applied Regression by John Fox,Sanford Weisberg Pdf

An R Companion to Applied Regression is a broad introduction to the R statistical computing environment in the context of applied regression analysis. John Fox and Sanford Weisberg provide a step-by-step guide to using the free statistical software R, an emphasis on integrating statistical computing in R with the practice of data analysis, coverage of generalized linear models, and substantial web-based support materials. The Third Edition has been reorganized and includes a new chapter on mixed-effects models, new and updated data sets, and a de-emphasis on statistical programming, while retaining a general introduction to basic R programming. The authors have substantially updated both the car and effects packages for R for this edition, introducing additional capabilities and making the software more consistent and easier to use. They also advocate an everyday data-analysis workflow that encourages reproducible research. To this end, they provide coverage of RStudio, an interactive development environment for R that allows readers to organize and document their work in a simple and intuitive fashion, and then easily share their results with others. Also included is coverage of R Markdown, showing how to create documents that mix R commands with explanatory text. "An R Companion to Applied Regression continues to provide the most comprehensive and user-friendly guide to estimating, interpreting, and presenting results from regression models in R." –Christopher Hare, University of California, Davis

Data Science in Education Using R

Ryan A. Estrellado,Emily A. Freer,Jesse Mostipak,Joshua M. Rosenberg,Isabella C. Velásquez
Data Science in Education Using R Book PDF

Author : Ryan A. Estrellado,Emily A. Freer,Jesse Mostipak,Joshua M. Rosenberg,Isabella C. Velásquez
Publisher : Routledge
Page : 315 pages
File Size : 47,7 Mb
Release : 2020-10-26
Category : Education
ISBN : 9781000200904

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Data Science in Education Using R by Ryan A. Estrellado,Emily A. Freer,Jesse Mostipak,Joshua M. Rosenberg,Isabella C. Velásquez Pdf

Data Science in Education Using R is the go-to reference for learning data science in the education field. The book answers questions like: What does a data scientist in education do? How do I get started learning R, the popular open-source statistical programming language? And what does a data analysis project in education look like? If you’re just getting started with R in an education job, this is the book you’ll want with you. This book gets you started with R by teaching the building blocks of programming that you’ll use many times in your career. The book takes a "learn by doing" approach and offers eight analysis walkthroughs that show you a data analysis from start to finish, complete with code for you to practice with. The book finishes with how to get involved in the data science community and how to integrate data science in your education job. This book will be an essential resource for education professionals and researchers looking to increase their data analysis skills as part of their professional and academic development.

Efficient R Programming

Colin Gillespie,Robin Lovelace
Efficient R Programming Book PDF

Author : Colin Gillespie,Robin Lovelace
Publisher : "O'Reilly Media, Inc."
Page : 220 pages
File Size : 46,9 Mb
Release : 2016-12-08
Category : Computers
ISBN : 9781491950753

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Efficient R Programming by Colin Gillespie,Robin Lovelace Pdf

There are many excellent R resources for visualization, data science, and package development. Hundreds of scattered vignettes, web pages, and forums explain how to use R in particular domains. But little has been written on how to simply make R work effectively—until now. This hands-on book teaches novices and experienced R users how to write efficient R code. Drawing on years of experience teaching R courses, authors Colin Gillespie and Robin Lovelace provide practical advice on a range of topics—from optimizing the set-up of RStudio to leveraging C++—that make this book a useful addition to any R user’s bookshelf. Academics, business users, and programmers from a wide range of backgrounds stand to benefit from the guidance in Efficient R Programming. Get advice for setting up an R programming environment Explore general programming concepts and R coding techniques Understand the ingredients of an efficient R workflow Learn how to efficiently read and write data in R Dive into data carpentry—the vital skill for cleaning raw data Optimize your code with profiling, standard tricks, and other methods Determine your hardware capabilities for handling R computation Maximize the benefits of collaborative R programming Accelerate your transition from R hacker to R programmer

Doing Meta-Analysis with R

Mathias Harrer,Pim Cuijpers,Toshi A. Furukawa,David D. Ebert
Doing Meta Analysis with R Book PDF

Author : Mathias Harrer,Pim Cuijpers,Toshi A. Furukawa,David D. Ebert
Publisher : CRC Press
Page : 500 pages
File Size : 40,9 Mb
Release : 2021-09-15
Category : Mathematics
ISBN : 9781000435634

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Doing Meta-Analysis with R by Mathias Harrer,Pim Cuijpers,Toshi A. Furukawa,David D. Ebert Pdf

Doing Meta-Analysis with R: A Hands-On Guide serves as an accessible introduction on how meta-analyses can be conducted in R. Essential steps for meta-analysis are covered, including calculation and pooling of outcome measures, forest plots, heterogeneity diagnostics, subgroup analyses, meta-regression, methods to control for publication bias, risk of bias assessments and plotting tools. Advanced but highly relevant topics such as network meta-analysis, multi-three-level meta-analyses, Bayesian meta-analysis approaches and SEM meta-analysis are also covered. A companion R package, dmetar, is introduced at the beginning of the guide. It contains data sets and several helper functions for the meta and metafor package used in the guide. The programming and statistical background covered in the book are kept at a non-expert level, making the book widely accessible. Features • Contains two introductory chapters on how to set up an R environment and do basic imports/manipulations of meta-analysis data, including exercises • Describes statistical concepts clearly and concisely before applying them in R • Includes step-by-step guidance through the coding required to perform meta-analyses, and a companion R package for the book

R in Finance and Economics

Abhay Kumar Singh,David Edmund Allen
R in Finance and Economics Book PDF

Author : Abhay Kumar Singh,David Edmund Allen
Publisher : World Scientific Publishing Company
Page : 264 pages
File Size : 54,9 Mb
Release : 2016-12-14
Category : Electronic
ISBN : 9789813144484

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R in Finance and Economics by Abhay Kumar Singh,David Edmund Allen Pdf

This book provides an introduction to the statistical software R and its application with an empirical approach in finance and economics. It is specifically targeted towards undergraduate and graduate students. It provides beginner-level introduction to R using RStudio and reproducible research examples. It will enable students to use R for data cleaning, data visualization and quantitative model building using statistical methods like linear regression, econometrics (GARCH etc), Copulas, etc. Moreover, the book demonstrates latest research methods with applications featuring linear regression, quantile regression, panel regression, econometrics, dependence modelling, etc. using a range of data sets and examples. Request Inspection Copy

Using R and RStudio for Data Management, Statistical Analysis, and Graphics

Nicholas J. Horton,Ken Kleinman
Using R and RStudio for Data Management Statistical Analysis and Graphics Book PDF

Author : Nicholas J. Horton,Ken Kleinman
Publisher : CRC Press
Page : 313 pages
File Size : 54,6 Mb
Release : 2015-03-10
Category : Mathematics
ISBN : 9781482237375

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Using R and RStudio for Data Management, Statistical Analysis, and Graphics by Nicholas J. Horton,Ken Kleinman Pdf

Improve Your Analytical SkillsIncorporating the latest R packages as well as new case studies and applications, Using R and RStudio for Data Management, Statistical Analysis, and Graphics, Second Edition covers the aspects of R most often used by statistical analysts. New users of R will find the book's simple approach easy to understand while more