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This volume is an introduction to the application of techniques developed for the study of disordered systems to problems which arise in biology. Topics presented include neural networks, adaptation and evolution, maturation of the immune response, and protein dynamics and folding. This book will appeal to students and researchers interested in statistical and condensed matter physics, glasses and spin glasses, and biophysics.
Spin Glasses and Complexity by Daniel L. Stein,Charles M. Newman Pdf
Spin glasses are disordered magnetic systems that have led to the development of mathematical tools with an array of real-world applications, from airline scheduling to neural networks. Spin Glasses and Complexity offers the most concise, engaging, and accessible introduction to the subject, fully explaining what spin glasses are, why they are important, and how they are opening up new ways of thinking about complexity. This one-of-a-kind guide to spin glasses begins by explaining the fundamentals of order and symmetry in condensed matter physics and how spin glasses fit into--and modify--this framework. It then explores how spin-glass concepts and ideas have found applications in areas as diverse as computational complexity, biological and artificial neural networks, protein folding, immune response maturation, combinatorial optimization, and social network modeling. Providing an essential overview of the history, science, and growing significance of this exciting field, Spin Glasses and Complexity also features a forward-looking discussion of what spin glasses may teach us in the future about complex systems. This is a must-have book for students and practitioners in the natural and social sciences, with new material even for the experts.
Spin Glasses and Random Fields by A. Peter Young Pdf
The last few years have seen many developments in the study of ?frustrated? systems, such as spin glasses and random fields. In addition, the application of the idea of spin glasses to other branches of physics, such as vortex lines in high temperature superconductors, protein folding, structural glasses, and the vulcanization of rubber, has been flourishing. The earlier reviews are several years old, so now is an appropriate time to summarize the recent developments. The articles in this book have been written by leading researchers and include theoretical and experimental studies, and large-scale numerical work (using state-of-the-art algorithms designed specifically for spin-glass-type problems), as well as analytical studies.
Spin Glasses and Other Frustrated Systems by D Chowdhury Pdf
The long list of “spin glass materials” and the summary of the experimental results provided in this book emphasize the common features of spin glasses despite the diversities. The critical review of more than a thousand papers not only identifies the complexities involved in the theoretical understanding of the static and dynamic properties of real spin glasses but also explains the physical concepts and mathematical formalism which have been used so successfully in solving the infinite range model. Morever, a beginner will find practical applications of the concepts of broken ergodicity, ultrametricity, gauge invariance, etc. in this book. Major progress has been made in solving many other challenging problems, e.g., computer design, associative memory, pattern recognition and neural networks, evolution of biological species etc. by mapping them onto the spin glass models. The chapter on these spin- glass-like systems will be useful not only to physicists but also to computer scientists and biologists. Contents:Real Spin Glass Materials, Spin-Glass-Like Systems and Spin Glass ModelsMean Field Theory of Spin GlassesSherrington-Kirkpatrick (SK) ModelVarious Solutions of the SK Model and Their EquivalenceDynamics of Spin GlassesVector Spin Glasses and Mixed PhaseResults of Computer ExperimentsRandom Energy Model Readership: Condensed matter physicists and material scientists. Keywords:Spin Glass Materials;Ergodicity;Ultrametricity;Gauge Invariance;Sherrington-Kirkpatrick (SK) Model;Random Energy Model
Spin Glass Theory and Beyond by M Mezard,G Parisi,M Virasoro Pdf
This book contains a detailed and self-contained presentation of the replica theory of infinite range spin glasses. The authors also explain recent theoretical developments, paying particular attention to new applications in the study of optimization theory and neural networks. About two-thirds of the book are a collection of the most interesting and pedagogical articles on the subject.
An Introduction to the Theory of Spin Glasses and Neural Networks by Viktor Dotsenko Pdf
This book aims to describe in simple terms the new area of statistical mechanics known as spin-glasses, encompassing systems in which quenched disorder is the dominant factor. The book begins with a non-mathematical explanation of the problem, and the modern understanding of the physics of the spin-glass state is formulated in general terms. Next, the 'magic' of the replica symmetry breaking scheme is demonstrated and the physics behind it discussed. Recent experiments on real spin-glass materials are briefly described to demonstrate how this somewhat abstract physics can be studied in the laboratory. The final chapters of the book are devoted to statistical models of neural networks.The material here is self-contained and should be accessible to students with a basic knowledge of theoretical physics and statistical mechanics. It has been used for a one-term graduate lecture course at the Landau Institute for Theoretical Physics.
Rugged Free Energy Landscapes by Wolfhard Janke Pdf
This collection of lectures and tutorial reviews focuses on the common computational approaches in use to unravel the static and dynamical behaviour of complex physical systems at the interface of physics, chemistry and biology. Prominent consideration is given to rugged free-energy landscapes. The authors aim to provide a common basis and technical language for the (computational) technology transfer between the fields and systems considered.
This book covers all principal aspects of currently investigated frustrated systems, from exactly solved frustrated models to real experimental frustrated systems, going through renormalization group treatment, Monte Carlo investigation of frustrated classical Ising and vector spin models, low-dimensional systems, spin ice and quantum spin glass. The reader can OCo within a single book OCo obtain a global view of the current research development in the field of frustrated systems.This new edition is updated with recent theoretical, numerical and experimental developments in the field of frustrated spin systems. The first edition of the book appeared in 2005. In this edition, more recent works until 2012 are reviewed. It contains nine chapters written by researchers who have actively contributed to the field. Many results are from recent works of the authors.The book is intended for postgraduate students as well as researchers in statistical physics, magnetism, materials science and various domains where real systems can be described with the spin language. Explicit demonstrations of formulas and full arguments leading to important results are given where it is possible to do so."
Provides an introduction to the structure and function of biomolecules --- especially proteins --- and the physical tools used to investigate them The discussion concentrates on physical tools and properties, emphasizing techniques that are contributing to new developments and avoiding those that are already well established and whose results have already been exploited fully New tools appear regularly - synchrotron radiation, proton radiology, holography, optical tweezers, and muon radiography, for example, have all been used to open new areas of understanding
Stuart Kauffman here presents a brilliant new paradigm for evolutionary biology, one that extends the basic concepts of Darwinian evolution to accommodate recent findings and perspectives from the fields of biology, physics, chemistry and mathematics. The book drives to the heart of the exciting debate on the origins of life and maintenance of order in complex biological systems. It focuses on the concept of self-organization: the spontaneous emergence of order that is widely observed throughout nature Kauffman argues that self-organization plays an important role in the Darwinian process of natural selection. Yet until now no systematic effort has been made to incorporate the concept of self-organization into evolutionary theory. The construction requirements which permit complex systems to adapt are poorly understood, as is the extent to which selection itself can yield systems able to adapt more successfully. This book explores these themes. It shows how complex systems, contrary to expectations, can spontaneously exhibit stunning degrees of order, and how this order, in turn, is essential for understanding the emergence and development of life on Earth. Topics include the new biotechnology of applied molecular evolution, with its important implications for developing new drugs and vaccines; the balance between order and chaos observed in many naturally occurring systems; new insights concerning the predictive power of statistical mechanics in biology; and other major issues. Indeed, the approaches investigated here may prove to be the new center around which biological science itself will evolve. The work is written for all those interested in the cutting edge of research in the life sciences.
This thesis addresses the surprising features of zero-temperature statics and dynamics of several spin glass models, including correlations between soft spins that arise spontaneously during avalanches, and the discovery of localized states that involve the presence of two-level systems. It also presents the only detailed historiographical research on the spin glass theory. Despite the extreme simplicity of their definition, spin glasses display a wide variety of non-trivial behaviors that are not yet fully understood. In this thesis the author sheds light on some of these, focusing on both the search for phase transitions under perturbations of Hamiltonians and the zero-temperature properties and responses to external stimuli. After introducing spin glasses and useful concepts on phase transitions and numerics, the results of two massive Monte Carlo campaigns on three-dimensional systems are presented: The first of these examines the de Almeida–Thouless transition, and proposes a new finite-size scaling ansatz, which accelerates the convergence to the thermodynamic limit. The second reconstructs the phase diagram of the Heisenberg spin glass with random exchange anisotropy.
The Sherrington-Kirkpatrick Model by Dmitry Panchenko Pdf
The celebrated Parisi solution of the Sherrington-Kirkpatrick model for spin glasses is one of the most important achievements in the field of disordered systems. Over the last three decades, through the efforts of theoretical physicists and mathematicians, the essential aspects of the Parisi solution were clarified and proved mathematically. The core ideas of the theory that emerged are the subject of this book, including the recent solution of the Parisi ultrametricity conjecture and a conceptually simple proof of the Parisi formula for the free energy. The treatment is self-contained and should be accessible to graduate students with a background in probability theory, with no prior knowledge of spin glasses. The methods involved in the analysis of the Sherrington-Kirkpatrick model also serve as a good illustration of such classical topics in probability as the Gaussian interpolation and concentration of measure, Poisson processes, and representation results for exchangeable arrays.
Magnetism: A Very Short Introduction by Stephen J. Blundell Pdf
Magnetism is a strange force, mysteriously attracting one object to another apparently through empty space. It has been claimed as a great healer, with magnetic therapies being proposed over the centuries and still popular today. Why are its mysterious important to solve? In this Very Short Introduction, Stephen J. Blundell explains why. For centuries magnetism has been used for various exploits; through compasses it gave us navigation and through motors, generators, and turbines it has given us power. Blundell explores our understanding of electricity and magnetism, from the work of Galvani, Ampere, Faraday, and Tesla, and goes on to explore how Maxwell and Faraday's work led to the unification of electricity and magnetism, thought of as one of the most imaginative developments in theoretical physics. With a discussion of the relationship between magnetism and relativity, quantum magnetism, and its impact on computers and information storage, Blundell shows how magnetism has changed our fundamental understanding of the Universe. ABOUT THE SERIES: The Very Short Introductions series from Oxford University Press contains hundreds of titles in almost every subject area. These pocket-sized books are the perfect way to get ahead in a new subject quickly. Our expert authors combine facts, analysis, perspective, new ideas, and enthusiasm to make interesting and challenging topics highly readable.
