The Least Cost Path From Landscape Genetics To Landscape Genomics

Author : Samuel A. Cushman,Andrew J. Shirk,Glenn T. Howe,Melanie A. Murphy,Rodney J. Dyer,Stéphane Joost
Publisher : Frontiers Media SA
Page : 116 pages
File Size : 48,7 Mb
Release : 2018-08-03
Category : Electronic
ISBN : 9782889455485

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The Least Cost Path From Landscape Genetics to Landscape Genomics by Samuel A. Cushman,Andrew J. Shirk,Glenn T. Howe,Melanie A. Murphy,Rodney J. Dyer,Stéphane Joost Pdf

Ecosystems are the stage on which the play of evolution is acted, and ecosystems are complex, spatially structured and temporally varying. The purpose of this Research Topic is to explore critical challenges and opportunities for the transition from landscape genetics to landscape genomics. Landscape genetics has focused on the spatial analysis of small genetic datasets, typically comprised of less than 20 microsatellite markers, taken from clusters of individuals in putative populations or distributed individuals across landscapes. The recent emergence of large scale genomic datasets produced by next generation sequencing methods poses tremendous challenge and opportunity to the field. Perhaps the greatest is to produce, process, curate, archive and analyze spatially referenced genomic datasets in a way such that research is led by a priori hypotheses regarding how environmental heterogeneity and temporal dynamics interact to affect gene flow and selection. The papers in the Research Topic cover a broad range of topics under this area of focus, from reviews of the emergence of landscape genetics, to best practices in spatial analysis of genetic data. The compilation, like the emerging field itself, is eclectic and illustrates the scope of both the challenges and opportunities of this emerging field.

Author : Niko Balkenhol,Samuel Cushman,Andrew Storfer,Lisette Waits
Publisher : John Wiley & Sons
Page : 288 pages
File Size : 52,5 Mb
Release : 2015-08-26
Category : Science
ISBN : 9781118525241

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Landscape Genetics by Niko Balkenhol,Samuel Cushman,Andrew Storfer,Lisette Waits Pdf

Despite the substantial interest in landscape genetics from the scientific community, learning about the concepts and methods underlying the field remains very challenging. The reason for this is the highly interdisciplinary nature of the field, which combines population genetics, landscape ecology, and spatial statistics. These fields have traditionally been treated separately in classes and textbooks, and very few scientists have received the interdisciplinary training necessary to efficiently teach or apply the diversity of techniques encompassed by landscape genetics. To address the current knowledge gap, this book provides the first in depth treatment of landscape genetics in a single volume. Specifically, this book delivers fundamental concepts and methods underlying the field, covering particularly important analytical methods in detail, and presenting empirical and theoretical applications of landscape genetics for a variety of environments and species. Consistent with the interdisciplinary nature of landscape genetics, the book combines an introductory, textbook like section with additional sections on advanced topics and applications that are more typical of edited volumes. The chapter topics and the expertise of the authors and the editorial team make the book a standard reference for anyone interested in landscape genetics. The book includes contributions from many of the leading researchers in landscape genetics. The group of scientists we have assembled has worked on several collaborative projects over the last years, including a large number of peer reviewed papers, several landscape genetics workshops at international conferences, and a distributed graduate seminar on landscape genetics. Based on the experiences gained during these collaborative teaching and research activities, the book includes chapters that synthesize fundamental concepts and methods underlying landscape genetics (Part 1), chapters on advanced topics that deserve a more in depth treatment (Part 2), and chapters illustrating the use of concepts and methods in empirical applications (Part 3). This structure ensures a high usefulness of the book for beginning landscape geneticists and experienced researchers alike, so that it has a broad target audience. At least one of the four co editors is involved in almost every chapter of the book, thereby ensuring a high consistency and coherency among chapters.

Author : Fred W. Allendorf,W. Chris Funk,Sally N. Aitken,Margaret Byrne,Gordon Luikart
Publisher : Oxford University Press
Page : 785 pages
File Size : 53,6 Mb
Release : 2022-02-10
Category : Science
ISBN : 9780192598578

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Conservation and the Genomics of Populations by Fred W. Allendorf,W. Chris Funk,Sally N. Aitken,Margaret Byrne,Gordon Luikart Pdf

The relentless loss of biodiversity is among the greatest problems facing the world today. The third edition of this established textbook provides an updated and comprehensive overview of the essential background, concepts, and tools required to understand how genetics can be used to conserve species, reduce threat of extinction, and manage species of ecological or commercial importance. This edition is thoroughly revised to reflect the major contribution of genomics to conservation of populations and species. It includes two new chapters: "Genetic Monitoring" and a final "Conservation Genetics in Practice" chapter that addresses the role of science and policy in conservation genetics. New genomic techniques and statistical analyses are crucial tools for the conservation geneticist. This accessible and authoritative textbook provides an essential toolkit grounded in population genetics theory, coupled with basic and applied research examples from plants, animals, and microbes. The book examines genetic and phenotypic variation in natural populations, the principles and mechanisms of evolutionary change, evolutionary response to anthropogenic change, and applications in conservation and management. Conservation and the Genomics of Populations helps demystify genetics and genomics for conservation practitioners and early career scientists, so that population genetic theory and new genomic data can help raise the bar in conserving biodiversity in the most critical 20 year period in the history of life on Earth. It is aimed at a global market of applied population geneticists, conservation practitioners, and natural resource managers working for wildlife and habitat management agencies. It will be of particular relevance and use to upper undergraduate and graduate students taking courses in conservation biology, conservation genetics, and wildlife management.

Author : Fred W. Allendorf,Gordon H. Luikart,Sally N. Aitken
Publisher : John Wiley & Sons
Page : 636 pages
File Size : 43,9 Mb
Release : 2012-12-17
Category : Science
ISBN : 9780470671450

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Conservation and the Genetics of Populations by Fred W. Allendorf,Gordon H. Luikart,Sally N. Aitken Pdf

Loss of biodiversity is among the greatest problems facing the world today. Conservation and the Genetics of Populations gives a comprehensive overview of the essential background, concepts, and tools needed to understand how genetic information can be used to conserve species threatened with extinction, and to manage species of ecological or commercial importance. New molecular techniques, statistical methods, and computer programs, genetic principles, and methods are becoming increasingly useful in the conservation of biological diversity. Using a balance of data and theory, coupled with basic and applied research examples, this book examines genetic and phenotypic variation in natural populations, the principles and mechanisms of evolutionary change, the interpretation of genetic data from natural populations, and how these can be applied to conservation. The book includes examples from plants, animals, and microbes in wild and captive populations. This second edition contains new chapters on Climate Change and Exploited Populations as well as new sections on genomics, genetic monitoring, emerging diseases, metagenomics, and more. One-third of the references in this edition were published after the first edition. Each of the 22 chapters and the statistical appendix have a Guest Box written by an expert in that particular topic (including James Crow, Louis Bernatchez, Loren Rieseberg, Rick Shine, and Lisette Waits). This book is essential for advanced undergraduate and graduate students of conservation genetics, natural resource management, and conservation biology, as well as professional conservation biologists working for wildlife and habitat management agencies. Additional resources for this book can be found at: www.wiley.com/go/allendorf/populations.

Author : Rijwan Khan
Publisher : Bentham Science Publishers
Page : 383 pages
File Size : 47,6 Mb
Release : 2022-09-23
Category : Computers
ISBN : 9789815036107

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Artificial Intelligence and Natural Algorithms by Rijwan Khan Pdf

This book informs the reader about applications of Artificial Intelligence (AI) and nature-inspired algorithms in different situations. Each chapter in this book is written by topic experts on AI, nature-inspired algorithms and data science. The basic concepts relevant to these topics are explained, including evolutionary computing (EC), artificial neural networks (ANN), swarm intelligence (SI), and fuzzy systems (FS). Additionally, the book also covers optimization algorithms for data analysis. The contents include algorithms that can be used in systems designed for plant science research, load balancing, environmental analysis and healthcare. The goal of the book is to equip the reader - students and data analysts - with the information needed to apply basic AI algorithms to resolve actual problems encountered in a professional environment.

Author : Alexandre W. S. Hilsdorf,Eric M. Hallerman
Publisher : Springer
Page : 258 pages
File Size : 48,7 Mb
Release : 2017-06-08
Category : Science
ISBN : 9783319558387

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Genetic Resources of Neotropical Fishes by Alexandre W. S. Hilsdorf,Eric M. Hallerman Pdf

The aim of this book is to systematize and discuss population genetic studies of freshwater fish in a region that harbors the greatest diversity of species among all inland water ecosystems. This volume explores the genetic evaluation for a number of orders, families and species of Neotropical fishes, and provides an overview on genetic resources and diversity and their relationships with fish domestication, breeding, and food production.

Author : Anonim
Publisher : Unknown
Page : 158 pages
File Size : 54,7 Mb
Release : 2010
Category : Electronic
ISBN : OCLC:694059947

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Landscape Genetics by Anonim Pdf

Author : Om P. Rajora
Publisher : Springer
Page : 822 pages
File Size : 42,5 Mb
Release : 2019-01-07
Category : Science
ISBN : 9783030045890

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Population Genomics by Om P. Rajora Pdf

Population genomics has revolutionized various disciplines of biology including population, evolutionary, ecological and conservation genetics, plant and animal breeding, human health, medicine and pharmacology by allowing to address novel and long-standing questions with unprecedented power and accuracy. It employs large-scale or genome-wide genetic information and bioinformatics to address various fundamental and applied aspects in biology and related disciplines, and provides a comprehensive genome-wide perspective and new insights that were not possible before. These advances have become possible due to the development of new and low-cost sequencing and genotyping technologies and novel statistical approaches and software, bioinformatics tools, and models. Population genomics is tremendously advancing our understanding the roles of evolutionary processes, such as mutation, genetic drift, gene flow, and natural selection, in shaping up genetic variation at individual loci and across the genome and populations; improving the assessment of population genetic parameters or processes such as adaptive evolution, effective population size, gene flow, admixture, inbreeding and outbreeding depression, demography, and biogeography; resolving evolutionary histories and phylogenetic relationships of extant, ancient and extinct species; understanding the genomic basis of fitness, adaptation, speciation, complex ecological and economically important traits, and disease and insect resistance; facilitating forensics, genetic medicine and pharmacology; delineating conservation genetic units; and understanding the genetic effects of resource management practices, and assisting conservation and sustainable management of genetic resources. This Population Genomics book discusses the concepts, approaches, applications and promises of population genomics in addressing most of the above fundamental and applied crucial aspects in a variety of organisms from microorganisms to humans. The book provides insights into a range of emerging population genomics topics including population epigenomics, landscape genomics, seascape genomics, paleogenomics, ecological and evolutionary genomics, biogeography, demography, speciation, admixture, colonization and invasion, genomic selection, and plant and animal domestication. This book fills a vacuum in the field and is expected to become a primary reference in Population Genomics world-wide.

Author : Kimberly A. With
Publisher : Oxford University Press
Page : 672 pages
File Size : 51,7 Mb
Release : 2019-07-01
Category : Science
ISBN : 9780192575364

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Essentials of Landscape Ecology by Kimberly A. With Pdf

Human activity during the Anthropocene has transformed landscapes worldwide on a scale that rivals or exceeds even the largest of natural forces. Landscape ecology has emerged as a science to investigate the interactions between natural and anthropogenic landscapes and ecological processes across a wide range of scales and systems: from the effects of habitat or resource distributions on the individual movements, gene flow, and population dynamics of plants and animals; to the human alteration of landscapes affecting the structure of biological communities and the functioning of entire ecosystems; to the sustainable management of natural resources and the ecosystem goods and services upon which society depends. This novel and comprehensive text presents the principles, theory, methods, and applications of landscape ecology in an engaging and accessible format that is supplemented by numerous examples and case studies from a variety of systems, including freshwater and marine "scapes".

Author : Marta Szulkin,Jason Munshi-South,Anne Charmantier
Publisher : Oxford University Press
Page : 352 pages
File Size : 40,6 Mb
Release : 2020-05-05
Category : Science
ISBN : 9780192573841

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Urban Evolutionary Biology by Marta Szulkin,Jason Munshi-South,Anne Charmantier Pdf

Urban Evolutionary Biology fills an important knowledge gap on wild organismal evolution in the urban environment, whilst offering a novel exploration of the fast-growing new field of evolutionary research. The growing rate of urbanization and the maturation of urban study systems worldwide means interest in the urban environment as an agent of evolutionary change is rapidly increasing. We are presently witnessing the emergence of a new field of research in evolutionary biology. Despite its rapid global expansion, the urban environment has until now been a largely neglected study site among evolutionary biologists. With its conspicuously altered ecological dynamics, it stands in stark contrast to the natural environments traditionally used as cornerstones for evolutionary ecology research. Urbanization can offer a great range of new opportunities to test for rapid evolutionary processes as a consequence of human activity, both because of replicate contexts for hypothesis testing, but also because cities are characterized by an array of easily quantifiable environmental axes of variation and thus testable agents of selection. Thanks to a wide possible breadth of inference (in terms of taxa) that may be studied, and a great variety of analytical methods, urban evolution has the potential to stand at a fascinating multi-disciplinary crossroad, enriching the field of evolutionary biology with emergent yet incredibly potent new research themes where the urban habitat is key. Urban Evolutionary Biology is an advanced textbook suitable for graduate level students as well as professional researchers studying the genetics, evolutionary biology, and ecology of urban environments. It is also highly relevant to urban ecologists and urban wildlife practitioners.

Author : Steven M. Goodman
Publisher : Princeton University Press
Page : 2296 pages
File Size : 44,6 Mb
Release : 2022-11-15
Category : Science
ISBN : 9780691222622

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The New Natural History of Madagascar by Steven M. Goodman Pdf

A marvelously illustrated reference to the natural wonders of one of the most spectacular places on earth Separated from Africa’s mainland for tens of millions of years, Madagascar has evolved a breathtaking wealth of biodiversity, becoming home to thousands of species found nowhere else on the planet. The New Natural History of Madagascar provides the most comprehensive, up-to-date synthesis available of this island nation’s priceless biological treasures. Now fully revised and expanded, this beautifully illustrated compendium features contributions by more than 600 globally renowned experts who cover the history of scientific exploration in Madagascar, as well as the island’s geology and soils, climate, forest ecology, human ecology, marine and coastal ecosystems, plants, invertebrates, fishes, amphibians, reptiles, birds, and mammals. This invaluable two-volume reference also includes detailed discussions of conservation efforts in Madagascar that showcase several successful protected area programs that can serve as models for threatened ecosystems throughout the world. Provides the most comprehensive overview of Madagascar’s rich natural historyCoedited by 18 different specialistsFeatures hundreds of new contributions by world-class expertsIncludes hundreds of new illustrationsCovers a broad array of topics, from geology and climate to animals, plants, and marine lifeSheds light on newly discovered species and draws on the latest scienceAn essential resource for anyone interested in Madagascar or tropical ecosystems in general, from biologists and conservationists to ecotourists and armchair naturalists

Author : Todd C. Esque,Geological Survey (U.S.),University of Nevada, Reno,California State University, Stanislaus
Publisher : Unknown
Page : 174 pages
File Size : 51,5 Mb
Release : 2013
Category : Endangered species
ISBN : UCSD:31822032672495

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Habitat Modeling, Landscape Genetics, and Habitat Connectivity for the Mohave Ground Squirrel to Guide Renewable Energy Development by Todd C. Esque,Geological Survey (U.S.),University of Nevada, Reno,California State University, Stanislaus Pdf

Author : Jason I. Ransom,Petra Kaczensky
Publisher : JHU Press
Page : 244 pages
File Size : 53,6 Mb
Release : 2016-06
Category : Nature
ISBN : 9781421419091

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Wild Equids by Jason I. Ransom,Petra Kaczensky Pdf

Readers will find new insight into the lives of the world's horses, zebras, and asses, understand the basis of our relationships with these animals, and develop a greater understanding of where equids come from and why they are worth conserving.Included in this book are detailed, state-of-the-science syntheses on Social structure, behavior, and cognition Habitat and diet Ecological niches Population dynamics Roles of humans in horse distribution through time Human dimensions and the meaning of wild Management of free-roaming horses Captive breeding of wild equids Conservation of wild equids Conservation of migrations Reintroductions Genetics and paleogenetics

Author : Marjorie F. Oleksiak,Om P. Rajora
Publisher : Springer Nature
Page : 458 pages
File Size : 55,6 Mb
Release : 2019-12-31
Category : Science
ISBN : 9783030379360

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Population Genomics: Marine Organisms by Marjorie F. Oleksiak,Om P. Rajora Pdf

Population genomics has provided unprecedented opportunities to unravel the mysteries of marine organisms in the oceans' depths. The world's oceans, which make up 70% of our planet, encompass diverse habitats and host numerous unexplored populations and species. Population genomics studies of marine organisms are rapidly emerging and have the potential to transform our understanding of marine populations, species, and ecosystems, providing insights into how these organisms are evolving and how they respond to different stimuli and environments. This knowledge is critical for understanding the fundamental aspects of marine life, how marine organisms will respond to environmental changes, and how we can better protect and preserve marine biodiversity and resources. This book brings together leading experts in the field to address critical aspects of fundamental and applied research in marine species and share their research and insights crucial for understanding marine ecosystem diversity and function. It also discusses the challenges, opportunities and future perspectives of marine population genomics.

Author : Fang Du,Rong Wang,Saneyoshi Ueno
Publisher : Frontiers Media SA
Page : 243 pages
File Size : 40,6 Mb
Release : 2023-06-29
Category : Science
ISBN : 9782832527702

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Forest tree conservation genomics by Fang Du,Rong Wang,Saneyoshi Ueno Pdf