Transactions On Computational Systems Biology Xiii

Author : Ralph-Johan Back,Ion Petre,Erik de Vink
Publisher : Springer
Page : 193 pages
File Size : 44,6 Mb
Release : 2011-05-05
Category : Computers
ISBN : 9783642197482

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Transactions on Computational Systems Biology XIII by Ralph-Johan Back,Ion Petre,Erik de Vink Pdf

The LNCS journal Transactions on Computational Systems Biology is devoted to inter- and multidisciplinary research in the fields of computer science and life sciences and supports a paradigmatic shift in the techniques from computer and information science to cope with the new challenges arising from the systems oriented point of view of biological phenomena. This, the 13th Transactions on Computational Systems Biology volume, guest edited by Ralph-Johan Back, Ion Petre, and Erik de Vink, focuses on Computational Models for Cell Processes and features a number of carefully selected and enhanced contributions initially presented at the CompMod workshop, which took place in Eindhoven, The Netherlands, in November 2009. From different points of view and following various approaches, the papers cover a wide range of topics in systems biology, addressing the dynamics and the computational principles of this emerging field.

Author : Corrado Priami,Falko Dressler,Ozgur B. Akan,Alioune Ngom
Publisher : Springer
Page : 197 pages
File Size : 43,5 Mb
Release : 2010-06-27
Category : Computers
ISBN : 9783540922735

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Transactions on Computational Systems Biology X by Corrado Priami,Falko Dressler,Ozgur B. Akan,Alioune Ngom Pdf

Technology is taking us to a world where myriads of heavily networked devices interact with the physical world in multiple ways, and at many levels, from the globalInternetdowntomicroandnanodevices. Manyofthesedevicesarehighly mobile and autonomous and must adapt to the surrounding environment in a totally unsupervised way. A fundamental research challenge is the design of robust decentralized c- puting systemsthat arecapableofoperating in changing environmentsandwith noisy input, and yet exhibit the desired behavior and response time, under c- straints such as energy consumption, size, and processing power. These systems should be able to adapt and learn how to react to unforeseen scenarios as well as to display properties comparable to social entities. The observation of nature has brought us many great and unforeseen concepts. Biological systems are able to handle many of these challenges with an elegance and e?ciency far beyond currenthumanartifacts. Basedonthisobservation,bio-inspiredapproacheshave been proposed as a means of handling the complexity of such systems. The goal is to obtain methods to engineer technical systems, which are of a stability and e?ciency comparable to those found in biological entities. This Special Issue on Biological and Biologically-inspired Communication contains the best papers from the Second International Conference on Bio- Inspired Models of Network, Information, and Computing Systems (BIONET- ICS 2007). The BIONETICS conference aims to bring together researchers and scientistsfromseveraldisciplines incomputerscienceandengineeringwhereb- inspired methods are investigated, as well as from bioinformatics, to deepen the information exchange and collaboration among the di?erent communities.

Author : Luca Marchetti,Corrado Priami,Vo Hong Thanh
Publisher : Springer
Page : 238 pages
File Size : 51,6 Mb
Release : 2017-09-27
Category : Computers
ISBN : 9783319631134

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Simulation Algorithms for Computational Systems Biology by Luca Marchetti,Corrado Priami,Vo Hong Thanh Pdf

This book explains the state-of-the-art algorithms used to simulate biological dynamics. Each technique is theoretically introduced and applied to a set of modeling cases. Starting from basic simulation algorithms, the book also introduces more advanced techniques that support delays, diffusion in space, or that are based on hybrid simulation strategies. This is a valuable self-contained resource for graduate students and practitioners in computer science, biology and bioinformatics. An appendix covers the mathematical background, and the authors include further reading sections in each chapter.

Author : Gordon Plotkin
Publisher : Springer Science & Business Media
Page : 253 pages
File Size : 48,9 Mb
Release : 2006-11-27
Category : Computers
ISBN : 9783540457794

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Transactions on Computational Systems Biology VI by Gordon Plotkin Pdf

The 5th Transactions on Computational Systems Biology volume, edited by Gordon Plotkin, features carefully selected and enhanced contributions initially presented at the 2005 IEEE International Conference on Granular Computing. The 9 papers selected for this special issue discuss various aspects of computational methods, algorithm and techniques in bioinformatics such as gene expression analysis, biomedical literature mining and natural language processing, protein structure prediction, biological database management and biomedical information retrieval.

Author : Corrado Priami
Publisher : Springer
Page : 108 pages
File Size : 50,6 Mb
Release : 2007-10-28
Category : Computers
ISBN : 9783540766391

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Transactions on Computational Systems Biology VIII by Corrado Priami Pdf

The LNCS journal Transactions on Computational Systems Biology is devoted to inter- and multidisciplinary research in the fields of computer science and life sciences. It supports a paradigmatic shift in the techniques from computer and information science to cope with the new challenges arising from the systems oriented point of view of biological phenomena. The six papers selected for this special issue cover a broad range of topics.

Author : Elisabetta De Maria
Publisher : John Wiley & Sons
Page : 468 pages
File Size : 53,6 Mb
Release : 2022-11-18
Category : Science
ISBN : 9781119716587

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Systems Biology Modelling and Analysis by Elisabetta De Maria Pdf

Systems Biology Modelling and Analysis Describes important modelling and computational methods for systems biology research to enable practitioners to select and use the most suitable technique Systems Biology Modelling and Analysis provides an overview of state-of-the-art techniques and introduces related tools and practices to formalize models and automate reasoning for systems biology. The authors present and compare the main formal methods used in systems biology for modelling biological networks, including discussion of their advantages, drawbacks, and main applications. Each chapter includes an intuitive presentation of the specific formalism, a brief history of the formalism and of its applications in systems biology, a formal description of the formalism and its variants, at least one realistic case study, some applications of formal techniques to validate and make deep analysis of models encoded with the formalism, and a discussion on the kind of biological systems for which the formalism is suited, along with concrete ideas on its possible evolution. Edited by a highly qualified expert with significant experience in the field, some of the methods and techniques covered in Systems Biology Modelling and Analysis include: Petri nets, an important tool for studying different aspects of biological systems, ranging from simple signaling pathways to metabolic networks and beyond Pathway Logic, a formal, rule-based system and interactive viewer for developing executable models of cellular processes Boolean networks, a mathematical model which has been widely used for decades in the context of biological regulation networks Answer Set Programming (ASP), which has proven to be a strong logic programming paradigm to deal with the inherent complexity of biological models For systems biologists, biochemists, bioinformaticians, molecular biologists, pharmacologists, and computer scientists, Systems Biology Modelling and Analysis is a comprehensive all-in-one resource to understand and harness the field’s current models and techniques while also preparing for their potential developments in coming years with the help of the author’s expert insight.

Author : David Gilbert,Monika Heiner
Publisher : Springer
Page : 396 pages
File Size : 43,8 Mb
Release : 2012-09-28
Category : Computers
ISBN : 9783642336362

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Computational Methods in Systems Biology by David Gilbert,Monika Heiner Pdf

This book constitutes the thoroughly refereed conference proceedings of the 10th International Conference on Computational Methods in Systems Biology, CMSB 2012, held in London, UK, during October 3-5, 2012. The 17 revised full papers and 8 flash posters presented together with the summaries of 3 invited papers were carefully reviewed and selected from 62 submissions. The papers cover the analysis of biological systems, networks, and data ranging from intercellular to multiscale. Topics included high-performance computing, and for the first time papers on synthetic biology.

Author : Pedro Mendes,Joseph O. Dada,Kieran Smallbone
Publisher : Springer
Page : 266 pages
File Size : 44,5 Mb
Release : 2014-10-20
Category : Computers
ISBN : 9783319129822

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Computational Methods in Systems Biology by Pedro Mendes,Joseph O. Dada,Kieran Smallbone Pdf

This book constitutes the proceedings of the 12th International Conference on Computational Methods in Systems Biology, CMSB 2014, held in Manchester, UK, in November 2014. The 16 regular papers presented together with 6 poster papers were carefully reviewed and selected from 31 regular and 18 poster submissions. The papers are organized in topical sections on formalisms for modeling biological processes, model inference from experimental data, frameworks for model verification, validation, and analysis of biological systems, models and their biological applications, computational approaches for synthetic biology, and flash posters.

Author : Corrado Priami,Emanuela Merelli,Pedro Pablo Gonzalez,Andrea Omicini
Publisher : Springer
Page : 169 pages
File Size : 45,5 Mb
Release : 2009-09-02
Category : Computers
ISBN : 3540818812

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Transactions on Computational Systems Biology III by Corrado Priami,Emanuela Merelli,Pedro Pablo Gonzalez,Andrea Omicini Pdf

Author : Ashutosh Gupta,Thomas A. Henzinger
Publisher : Springer
Page : 284 pages
File Size : 54,5 Mb
Release : 2013-09-18
Category : Computers
ISBN : 9783642407086

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Computational Methods in Systems Biology by Ashutosh Gupta,Thomas A. Henzinger Pdf

This book constitutes the proceedings of the 11th International Conference on Computational Methods in Systems Biology, CMSB 2013, held in Klosterneuburg, Austria, in September 2013. The 15 regular papers included in this volume were carefully reviewed and selected from 27 submissions. They deal with computational models for all levels, from molecular and cellular, to organs and entire organisms.

Author : Luca Cardelli,Stephen Emmott
Publisher : Springer Science & Business Media
Page : 147 pages
File Size : 41,6 Mb
Release : 2006-04-06
Category : Computers
ISBN : 9783540332459

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Transactions on Computational Systems Biology IV by Luca Cardelli,Stephen Emmott Pdf

This, the 4th Transactions on Computational Systems Biology volume, contains carefully selected and enhanced contributions presented at the first Converging Science conference held at the University of Trento, Italy, in December 2004. Dedicated especially to models and metaphors from biology to bioinformatics tools, the 11 papers selected for the special issue cover a wide range of bioinformatics research, such as foundations of global computing, interdisciplinarity in innovation initiatives, biodiversity, and more.

Author : Anna Ingolfsdottir,Bud Mishra,Hanne Riis Nielson
Publisher : Springer
Page : 187 pages
File Size : 47,6 Mb
Release : 2006-11-17
Category : Computers
ISBN : 9783540488392

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Transactions on Computational Systems Biology VII by Anna Ingolfsdottir,Bud Mishra,Hanne Riis Nielson Pdf

This volume, the 7th in the Transactions on Computational Systems Biology series, contains a fully refereed and carefully selected set of papers from two workshops: BioConcur 2004 held in London, UK in August 2004 and BioConcur 2005 held in San Francisco, CA, USA in August 2005. The 8 papers chosen for this special issue are devoted to various aspects of computational methods, algorithms, and techniques in bioinformatics.

Author : Ezio Bartocci,Pietro Lio,Nicola Paoletti
Publisher : Springer
Page : 356 pages
File Size : 55,6 Mb
Release : 2016-09-03
Category : Computers
ISBN : 9783319451770

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Computational Methods in Systems Biology by Ezio Bartocci,Pietro Lio,Nicola Paoletti Pdf

This book constitutes the refereed proceedings of the 14th International Conference on Computational Methods in Systems Biology, CMSB 2016, held in Cambridge, UK, in September 2016. The 20 full papers, 3 tool papers and 9 posters presented were carefully reviewed and selected from 37 regular paper submissions. The topics include formalisms for modeling biological processes; models and their biological applications; frameworks for model verification, validation, analysis, and simulation of biological systems; high-performance computational systems biology and parallel implementations; model inference from experimental data; model integration from biological databases; multi-scale modeling and analysis methods; and computational approaches for synthetic biology.

Author : Corrado Priami
Publisher : Springer
Page : 153 pages
File Size : 44,6 Mb
Release : 2011-01-10
Category : Computers
ISBN : 9783540887652

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Transactions on Computational Systems Biology IX by Corrado Priami Pdf

The LNCS journal Transactions on Computational Systems Biology is devoted to inter- and multidisciplinary research in the fields of computer science and life sciences and supports a paradigmatic shift in the techniques from computer and information science to cope with the new challenges arising from the systems oriented point of view of biological phenomena. This issue contains four highly detailed papers. The first paper focuses on quantitative aspects of the bgl operon for E.coli. The second contribution deals with ecosystem transitions affecting phenotype expressions and selection mechanisms. The third paper presents the Stochastic Calculus of Looping Sequences (SCLS) suitable for the description of microbiological systems, such as cellular pathways, and their evolution. The final contribution describes the use of biological transactions to make atomic sequences of interactions in the BlenX language.

Author : Anonim
Publisher : Springer Science & Business Media
Page : 271 pages
File Size : 41,9 Mb
Release : 2010-02-18
Category : Computers
ISBN : 9783642117114

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Transactions on Computational Systems Biology XII by Anonim Pdf

LNCS 5945