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Advances in Molecular Ecology by Gary R. Carvalho Pdf
Each contributor to this publication was asked to examine how molecular genetic tools have contributed to their specific areas of consideration. To increase the practical utility of the book, a summary of software that is available for the anaylsis of data in molecular ecology is included.
A fully updated guide to the increasingly prevalent use of molecular data in ecological studies Molecular ecology is concerned with how molecular biology and population genetics may help us to better understand aspects of ecology and evolution including local adaptation, dispersal across landscapes, phylogeography, behavioral ecology, and conservation biology. As the technology driving genetic science has advanced, so too has this fast-moving and innovative discipline, providing important insights into virtually all taxonomic groups. This third edition of Molecular Ecology takes account of the breakthroughs achieved in recent years to give readers a thorough and up-to-date account of the field as it is today. New topics covered in this book include next-generation sequencing, metabarcoding, environmental DNA (eDNA) assays, and epigenetics. As one of molecular ecology’s leading figures, author Joanna Freeland also provides those new to the area with a full grounding in its fundamental concepts and principles. This important text: Is presented in an accessible, user-friendly manner Offers a comprehensive introduction to molecular ecology Has been revised to reflect the field’s most recent studies and research developments Includes new chapters covering topics such as landscape genetics, metabarcoding, and community genetics Rich in insights that will benefit anyone interested in the ecology and evolution of natural populations, Molecular Ecology is an ideal guide for all students and professionals who wish to learn more about this exciting field.
Molecular Ecology provides a comprehensive introduction to the many diverse aspects of this subject. The book unites theory with examples from a wide range of taxa in a logical and progressive manner, and its accessible writing style makes subjects such as population genetics and phylogenetics highly comprehensible to its readers. The first part of the book introduces the essential underpinnings of molecular ecology, starting with a review of genetics and a discussion of the molecular markers that are most frequently used in ecological research. This leads into an overview of population genetics in ecology. The second half of the book then moves on to specific applications of molecular ecology, covering phylogeography, behavioural ecology and conservation genetics. The final chapter looks at molecular ecology in a wider context by using a number of case studies that are relevant to various economic and social concerns, including wildlife forensics, agriculture, and overfishing * comprehensive overview of the different aspects of molecular ecology * attention to both theoretical and applied concerns * accessible writing style and logical structure * numerous up-to-date examples and references This will be an invaluable reference for those studying molecular ecology, population genetics, evolutionary biology, conservation genetics and behavioural ecology, as well as researchers working in these fields.
Molecular Microbial Ecology by Mark Osborn,Cindy Smith Pdf
Microoganisms are distributed across every ecosystem, and microbial transformations are fundamental to the operation of the biosphere. Microbial ecology is the study of this interaction between microorganisms and their environment, and arguably represents one of the most important areas of biological research. Yet for many years our study of microbial flora was severely limited: the primary method of culturing microorganisms on media allowed us to study only between 0.1 and 10% of the total microbial flora in any given environment. Molecular Microbial Ecology gives a comprehensive guide to the recent revolution in the study of microorganisms in the environment. Details are given on molecular methods for isolating some of the previously uncultured and numerically dominant microbial groups. PCR-based approaches to studying prokaryotic systematics are described, including ribosomal RNA analysis and stable isotope probing. Later chapters cover DNA hybridisation techniques (including fluorescent in situ hybridisation), as well as genomic and metagenomic approaches to microbial ecology. Gathering together some of the world’s leading experts, this book provides an invaluable introduction to the modern theory and molecular methods used in studying microbial ecology.
Molecular Approaches To Ecology And Evolution by R. deSalle,Bernd Schierwater Pdf
"The last ten years have seen an explosion of activity in the application of molecular biological techniques to evolutionary and ecological studies. This volume attempts to summarize advances in the field and place into context the wide variety of methods available to ecologists and evolutionary biologists using molecular techniques. Both the molecular techniques and the variety of methods available for the analysis of such data are presented in the text. The book has three major sections - populations, species and higher taxa. Each of these sections contains chapters by leading scientists working at these levels, where clear and concise discussion of technology and implication of results are presented. The volume is intended for advanced students of ecology and evolution and would be a suitable textbook for advanced undergraduate and graduate student seminar courses." -- Publisher.
Ecological Genomics by Christian R. Landry,Nadia Aubin-Horth Pdf
Researchers in the field of ecological genomics aim to determine how a genome or a population of genomes interacts with its environment across ecological and evolutionary timescales. Ecological genomics is trans-disciplinary by nature. Ecologists have turned to genomics to be able to elucidate the mechanistic bases of the biodiversity their research tries to understand. Genomicists have turned to ecology in order to better explain the functional cellular and molecular variation they observed in their model organisms. We provide an advanced-level book that covers this recent research and proposes future development for this field. A synthesis of the field of ecological genomics emerges from this volume. Ecological Genomics covers a wide array of organisms (microbes, plants and animals) in order to be able to identify central concepts that motivate and derive from recent investigations in different branches of the tree of life. Ecological Genomics covers 3 fields of research that have most benefited from the recent technological and conceptual developments in the field of ecological genomics: the study of life-history evolution and its impact of genome architectures; the study of the genomic bases of phenotypic plasticity and the study of the genomic bases of adaptation and speciation.
The incorporation of molecular methods in ecological research has added an exciting new dimension to conventional studies, and opened windows into previously intractable areas of research, at the interface between ecology and genetics. Using these new methods it has now become routine to use genetic markers to study ecological phenomena, from molecular sexing of individuals and parentage of offspring, through to population structure of species and phylogenetic relationships of taxa. These methods have stimulated an explosion of empirical and analytical developments in molecular ecology, which have in turn, increasingly attracted students and professional biologists eager to employ them in their studies. Molecular Methods in Ecology traces the development of molecular ecology by reviewing basic molecular biological techniques and earlier methods such as protein electrophoresis, DNA-DNA hybridisation, restriction analysis of DNA, and DNA fingerprinting. Later chapters review methods using newer classes of markers such as microsatellites, introns, MHC, SSRs and AFLP markers in plants and molecular sexing in animals. The strengths and limitations of methods are discussed and guidance is provided in selecting the most appropriate methods for particular problems in ecology. This book will provide both postgraduates and researchers with a guide to choosing and employing appropriate methodologies for successful research in the field of molecular ecology. Provides up-to-date summaries of the latest molecular approaches in this rapidly expanding field. Gives guidance on the appropriate choice of methods for particular problems in ecology, and their strengths and limitations. Provides brief laboratory protocols for each molecular method and summaries of software available for analysis of data in molecular ecology. Outlines examples of the latest research results from studies of both plants and animals, integrated within the framework of molecular ecology.
Molecular Ecology of Aquatic Communities by J.P. Zehr,Mary Voytek Pdf
This book presents a compendium of molecular biology applications for the study of aquatic community ecology. The collection presents the diversity of approaches that have been used, and provides future directions for the study of `molecular ecology' of aquatic communities, from viruses to fish, and in aquatic systems ranging from freshwater streams and lakes to estuaries and oceans. This collection of papers will provide a useful text and resource for upper-level undergraduate and graduate students in ecology, as well as for the researcher and educator.
J. Andrew DeWoody,John W. Bickham,Charles H. Michler,Krista M. Nichols,Gene E. Rhodes,Keith E. Woeste
Author : J. Andrew DeWoody,John W. Bickham,Charles H. Michler,Krista M. Nichols,Gene E. Rhodes,Keith E. Woeste Publisher : Cambridge University Press Page : 393 pages File Size : 46,8 Mb Release : 2010-06-14 Category : Nature ISBN : 9781139488556
Molecular Approaches in Natural Resource Conservation and Management by J. Andrew DeWoody,John W. Bickham,Charles H. Michler,Krista M. Nichols,Gene E. Rhodes,Keith E. Woeste Pdf
Recent advances in molecular genetics and genomics have been embraced by many in natural resource conservation. Today, several major conservation and management journals are now using 'genetics' editors to deal solely with the influx of manuscripts that employ molecular data. The editors have attempted to synthesize some of the major uses of molecular markers in natural resource management in a book targeted not only at scientists but also at individuals actively making conservation and management decisions. To that end, the text features contributors who are major figures in molecular ecology and evolution - many having published books of their own. The aim is to direct and distil the thoughts of these outstanding scientists by compiling compelling case histories in molecular ecology as they apply to natural resource management.
Integrative Phytochemistry: from Ethnobotany to Molecular Ecology by John Romeo Pdf
This monograph series is commissioned by the Phytochemical Society of North America (PSNA). The volumes in this series contain articles on developing topics of interest to scientists, students and individuals interested in recent developments in the biochemistry, chemistry and molecular biology of plants. Volume 37 concentrates on the integration of techniques to solve complex phytochemistry problems. This volume describes the combination of multiple techniques to solve complex plant science problems. The chapters investigate What, Why and How secondary metabolites are formed. Volume 37 covers a wide range of phytochemistry topics from Ethnobotany to Molecular ecology.
Molecular Ecology and Evolution: Approaches and Applications by Bernd Schierwater,Bruno Streit,G.P. Wagner,Rob DeSalle Pdf
In the last 25 years, we have witnessed a revolution in the way that ecologists and evolutionary biologists approach their disciplines. This revolution has been fueled by the ability to dissect the genetic and molecular basis of variation that is partly the currency of these disci plines. Using modern molecular techniques, we have begun to restruc ture the spectrum of questions that can be addressed in studying the mechanisms and consequences of the ecology and evolution of living organisms. The molecular revolution has co me in waves, so to speak, with three particularly important developments. The first concerns the establish ment and widespread use of pro tein analysis. Microcomplement fixation and isozyme e1ectrophoresis were the techniques around which much of the genetic work in ecology and evolution were once based. The next wave started with the development of recombinant DNA technology and centered around the use of restriction fragment length polymor phisms (RFLPs) and sequencing of DNAs cloned in bacteria. This technology was the first to actually examine and accumulate genetic information at the nucleotide level. The most recent wave of technology that we are currently experiencing is based on our ability to amplify DNA sequences enzymatically via the Polymerase Chain Reaction (PCR). Several techniques re1ated to PCR have been developed and used extensively in ecological and evolutionary studies.
Molecular Ecology and Evolution: Approaches and Applications by B. Schierwater,B. Streit,G.P. Wagner,R. DeSalle Pdf
The past 25 years have witnessed a revolution in the way ecologists and evolutionary biologists approach their disciplines. Modern molecular techniques are now reshaping the spectrum of questions that can be addressed while studying the mechanisms and consequences of the ecology and evolution of living organisms. "Molecular Ecology and Evolution: Approaches and Applications" describes, from a molecular perspective, several methodological and technical approaches used in the fields of ecology, evolution, population biology, molecular systematics, conservation genetics, and development. Modern techniques are introduced, and older, more classic ones refined. The advantages, limitations, and potentials of each are discussed in detail, and thereby illustrate the widening range of cross-field research and applications which this modern technology is stimulating. This book will serve as an important textbook for graduate and advanced undergraduate students, and as a key reference work for researchers
Advances in Phytoplankton Ecology by Lesley Clementson,Ruth Eriksen,Anusuya Willis Pdf
Phytoplankton ecology has developed from an understanding of taxonomy, species dynamics and functional roles, and species interactions with the surrounding environment. New and emerging technologies enable a paradigm shift in the ways we monitor and understand phytoplankton in a range of environments. Advances in Phytoplankton Ecology: Applications of Emerging Technologies is a practical guide to these new technologies and explores their application with case studies to show how recent advances have changed our understanding of phytoplankton ecology. Part one of this book explores how traditional taxonomy and species identification has changed, moving from morphological to molecular techniques. Part two explores the new technologies for remote and automatic monitoring and sensor technology and applications for management. Part three explores the explosion of omics techniques and their application in species identification, functional populations, trait characterization, interspecific interactions, and interaction with their environment. This book is an invaluable guide for marine and freshwater ecology researchers to how new technologies can enhance our understanding of ecology. Combines traditional techniques with new technologies and methods Explores the influence of new technology on our understanding of phytoplankton ecology Provides practical applications of each technique through case studies in each chapter
Evolutionary Genetics by Glenn-Peter Sætre,Mark Ravinet Pdf
Evolutionary genetics is the study of how genetic variation leads to evolutionary change. With the recent explosion in the availability of whole genome sequence data, vast quantities of genetic data are being generated at an ever-increasing pace with the result that programming has become an essential tool for researchers. Most importantly, a thorough understanding of evolutionary principles is essential for making sense of this genetic data. This up-to-date textbook covers all the major components of modern evolutionary genetics, carefully explaining fundamental processes such as mutation, natural selection, genetic drift, and speciation, together with their consequences. The book also draws on a rich literature of exciting and inspiring examples to demonstrate the diversity of evolutionary research, including an emphasis on how evolution and selection has shaped our own species. Furthermore, at the end of each chapter, study questions are provided to motivate the reader to think and reflect on the concepts introduced. Practical experience is essential when it comes to developing an understanding of how to use genetic and genomic data to analyze and address interesting questions in the life sciences and how to interpret results in meaningful ways. In addition to the main text, a series of online tutorials using the R language serves as an introduction to programming, statistics, and the analysis of evolutionary genetic data. The R environment stands out as an ideal all-purpose, open source platform to handle and analyze such data. The book and its online materials take full advantage of the authors' own experience in working in a post-genomic revolution world, and introduce readers to the plethora of molecular and analytical methods that have only recently become available.
Bacteriophages, or phages, are viruses that infect bacteria and are believed to be the most abundant and genetically diverse organisms on Earth. As such, their ecology is vast both in quantitative and qualitative terms. Their abundance makes an understanding of phage ecology increasingly relevant to bacterial ecosystem ecology, bacterial genomics and bacterial pathology. Abedon provides the first text on phage ecology for almost 20 years. Written by leading experts, synthesizing the three key approaches to studying phage ecology, namely studying them in natural environments (in situ), experimentally in the lab, or theoretically using mathematical or computer models. With strong emphasis on microbial population biology and distilling cutting-edge research into basic principles, this book will complement other currently available volumes. It will therefore serve as an essential resource for graduate students and researchers, particularly those with an interest in phage ecology and evolutionary biology.
