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Bayesian Statistics for Experimental Scientists by Richard A. Chechile Pdf
An introduction to the Bayesian approach to statistical inference that demonstrates its superiority to orthodox frequentist statistical analysis. This book offers an introduction to the Bayesian approach to statistical inference, with a focus on nonparametric and distribution-free methods. It covers not only well-developed methods for doing Bayesian statistics but also novel tools that enable Bayesian statistical analyses for cases that previously did not have a full Bayesian solution. The book's premise is that there are fundamental problems with orthodox frequentist statistical analyses that distort the scientific process. Side-by-side comparisons of Bayesian and frequentist methods illustrate the mismatch between the needs of experimental scientists in making inferences from data and the properties of the standard tools of classical statistics.
The Subjectivity of Scientists and the Bayesian Approach by S. James Press,Judith M. Tanur Pdf
Intriguing examination of works by Aristotle, Galileo, Newton, Pasteur, Einstein, Margaret Mead, and other scientists in terms of subjectivity and the Bayesian approach to statistical analysis. "An insightful work." — Choice. 2001 edition.
Bayesian Data Analysis, Third Edition by Andrew Gelman,John B. Carlin,Hal S. Stern,David B. Dunson,Aki Vehtari,Donald B. Rubin Pdf
Now in its third edition, this classic book is widely considered the leading text on Bayesian methods, lauded for its accessible, practical approach to analyzing data and solving research problems. Bayesian Data Analysis, Third Edition continues to take an applied approach to analysis using up-to-date Bayesian methods. The authors—all leaders in the statistics community—introduce basic concepts from a data-analytic perspective before presenting advanced methods. Throughout the text, numerous worked examples drawn from real applications and research emphasize the use of Bayesian inference in practice. New to the Third Edition Four new chapters on nonparametric modeling Coverage of weakly informative priors and boundary-avoiding priors Updated discussion of cross-validation and predictive information criteria Improved convergence monitoring and effective sample size calculations for iterative simulation Presentations of Hamiltonian Monte Carlo, variational Bayes, and expectation propagation New and revised software code The book can be used in three different ways. For undergraduate students, it introduces Bayesian inference starting from first principles. For graduate students, the text presents effective current approaches to Bayesian modeling and computation in statistics and related fields. For researchers, it provides an assortment of Bayesian methods in applied statistics. Additional materials, including data sets used in the examples, solutions to selected exercises, and software instructions, are available on the book’s web page.
Bayesian Statistics for the Social Sciences by David Kaplan Pdf
The second edition of this practical book equips social science researchers to apply the latest Bayesian methodologies to their data analysis problems. It includes new chapters on model uncertainty, Bayesian variable selection and sparsity, and Bayesian workflow for statistical modeling. Clearly explaining frequentist and epistemic probability and prior distributions, the second edition emphasizes use of the open-source RStan software package. The text covers Hamiltonian Monte Carlo, Bayesian linear regression and generalized linear models, model evaluation and comparison, multilevel modeling, models for continuous and categorical latent variables, missing data, and more. Concepts are fully illustrated with worked-through examples from large-scale educational and social science databases, such as the Program for International Student Assessment and the Early Childhood Longitudinal Study. Annotated RStan code appears in screened boxes; the companion website (www.guilford.com/kaplan-materials) provides data sets and code for the book's examples. New to This Edition *Utilizes the R interface to Stan--faster and more stable than previously available Bayesian software--for most of the applications discussed. *Coverage of Hamiltonian MC; Cromwell’s rule; Jeffreys' prior; the LKJ prior for correlation matrices; model evaluation and model comparison, with a critique of the Bayesian information criterion; variational Bayes as an alternative to Markov chain Monte Carlo (MCMC) sampling; and other new topics. *Chapters on Bayesian variable selection and sparsity, model uncertainty and model averaging, and Bayesian workflow for statistical modeling.
Author : Mark L. Taper,Subhash R. Lele Publisher : University of Chicago Press Page : 586 pages File Size : 48,9 Mb Release : 2010-12-15 Category : Science ISBN : 9780226789583
The Nature of Scientific Evidence by Mark L. Taper,Subhash R. Lele Pdf
An exploration of the statistical foundations of scientific inference, The Nature of Scientific Evidence asks what constitutes scientific evidence and whether scientific evidence can be quantified statistically. Mark Taper, Subhash Lele, and an esteemed group of contributors explore the relationships among hypotheses, models, data, and inference on which scientific progress rests in an attempt to develop a new quantitative framework for evidence. Informed by interdisciplinary discussions among scientists, philosophers, and statisticians, they propose a new "evidential" approach, which may be more in keeping with the scientific method. The Nature of Scientific Evidence persuasively argues that all scientists should care more about the fine points of statistical philosophy because therein lies the connection between theory and data. Though the book uses ecology as an exemplary science, the interdisciplinary evaluation of the use of statistics in empirical research will be of interest to any reader engaged in the quantification and evaluation of data.
There is an explosion of interest in Bayesian statistics, primarily because recently created computational methods have finally made Bayesian analysis tractable and accessible to a wide audience. Doing Bayesian Data Analysis, A Tutorial Introduction with R and BUGS, is for first year graduate students or advanced undergraduates and provides an accessible approach, as all mathematics is explained intuitively and with concrete examples. It assumes only algebra and ‘rusty’ calculus. Unlike other textbooks, this book begins with the basics, including essential concepts of probability and random sampling. The book gradually climbs all the way to advanced hierarchical modeling methods for realistic data. The text provides complete examples with the R programming language and BUGS software (both freeware), and begins with basic programming examples, working up gradually to complete programs for complex analyses and presentation graphics. These templates can be easily adapted for a large variety of students and their own research needs.The textbook bridges the students from their undergraduate training into modern Bayesian methods. Accessible, including the basics of essential concepts of probability and random sampling Examples with R programming language and BUGS software Comprehensive coverage of all scenarios addressed by non-bayesian textbooks- t-tests, analysis of variance (ANOVA) and comparisons in ANOVA, multiple regression, and chi-square (contingency table analysis). Coverage of experiment planning R and BUGS computer programming code on website Exercises have explicit purposes and guidelines for accomplishment
Introduction to Bayesian Statistics by William M. Bolstad,James M. Curran Pdf
"...this edition is useful and effective in teaching Bayesian inference at both elementary and intermediate levels. It is a well-written book on elementary Bayesian inference, and the material is easily accessible. It is both concise and timely, and provides a good collection of overviews and reviews of important tools used in Bayesian statistical methods." There is a strong upsurge in the use of Bayesian methods in applied statistical analysis, yet most introductory statistics texts only present frequentist methods. Bayesian statistics has many important advantages that students should learn about if they are going into fields where statistics will be used. In this third Edition, four newly-added chapters address topics that reflect the rapid advances in the field of Bayesian statistics. The authors continue to provide a Bayesian treatment of introductory statistical topics, such as scientific data gathering, discrete random variables, robust Bayesian methods, and Bayesian approaches to inference for discrete random variables, binomial proportions, Poisson, and normal means, and simple linear regression. In addition, more advanced topics in the field are presented in four new chapters: Bayesian inference for a normal with unknown mean and variance; Bayesian inference for a Multivariate Normal mean vector; Bayesian inference for the Multiple Linear Regression Model; and Computational Bayesian Statistics including Markov Chain Monte Carlo. The inclusion of these topics will facilitate readers' ability to advance from a minimal understanding of Statistics to the ability to tackle topics in more applied, advanced level books. Minitab macros and R functions are available on the book's related website to assist with chapter exercises. Introduction to Bayesian Statistics, Third Edition also features: Topics including the Joint Likelihood function and inference using independent Jeffreys priors and join conjugate prior The cutting-edge topic of computational Bayesian Statistics in a new chapter, with a unique focus on Markov Chain Monte Carlo methods Exercises throughout the book that have been updated to reflect new applications and the latest software applications Detailed appendices that guide readers through the use of R and Minitab software for Bayesian analysis and Monte Carlo simulations, with all related macros available on the book's website Introduction to Bayesian Statistics, Third Edition is a textbook for upper-undergraduate or first-year graduate level courses on introductory statistics course with a Bayesian emphasis. It can also be used as a reference work for statisticians who require a working knowledge of Bayesian statistics.
Author : Deborah G. Mayo Publisher : University of Chicago Press Page : 512 pages File Size : 47,5 Mb Release : 1996-07-17 Category : Science ISBN : 9780226511993
Error and the Growth of Experimental Knowledge by Deborah G. Mayo Pdf
We may learn from our mistakes, but Deborah Mayo argues that, where experimental knowledge is concerned, we haven't begun to learn enough. Error and the Growth of Experimental Knowledge launches a vigorous critique of the subjective Bayesian view of statistical inference, and proposes Mayo's own error-statistical approach as a more robust framework for the epistemology of experiment. Mayo genuinely addresses the needs of researchers who work with statistical analysis, and simultaneously engages the basic philosophical problems of objectivity and rationality. Mayo has long argued for an account of learning from error that goes far beyond detecting logical inconsistencies. In this book, she presents her complete program for how we learn about the world by being "shrewd inquisitors of error, white gloves off." Her tough, practical approach will be important to philosophers, historians, and sociologists of science, and will be welcomed by researchers in the physical, biological, and social sciences whose work depends upon statistical analysis.
Bayesian Reasoning in Data Analysis by Giulio D'Agostini Pdf
This book provides a multi-level introduction to Bayesian reasoning (as opposed to “conventional statistics”) and its applications to data analysis. The basic ideas of this “new” approach to the quantification of uncertainty are presented using examples from research and everyday life. Applications covered include: parametric inference; combination of results; treatment of uncertainty due to systematic errors and background; comparison of hypotheses; unfolding of experimental distributions; upper/lower bounds in frontier-type measurements. Approximate methods for routine use are derived and are shown often to coincide — under well-defined assumptions! — with “standard” methods, which can therefore be seen as special cases of the more general Bayesian methods. In dealing with uncertainty in measurements, modern metrological ideas are utilized, including the ISO classification of uncertainty into type A and type B. These are shown to fit well into the Bayesian framework. Contents: Critical Review and Outline of the Bayesian Alternative:Uncertainty in Physics and the Usual Methods of Handling ItA Probabilistic Theory of Measurement UncertaintyA Bayesian Primer:Subjective Probability and Bayes' TheoremProbability Distributions (A Concise Reminder)Bayesian Inference of Continuous QuantitiesGaussian LikelihoodCounting ExperimentsBypassing Bayes' Theorem for Routine ApplicationsBayesian UnfoldingFurther Comments, Examples and Applications:Miscellanea on General Issues in Probability and InferenceCombination of Experimental Results: A Closer LookAsymmetric Uncertainties and Nonlinear PropagationWhich Priors for Frontier Physics?Conclusion:Conclusions and Bibliography Readership: Graduate students and researchers interested in probability and statistics and their applications in science, particularly the evaluation of uncertainty in measurements. Keywords:Probability;Bayesian Statistics;Error Theory;Measurement Uncertainty;MetrologyReviews:“… statistics textbooks must take seriously the need to teach the foundations of statistical reasoning from the beginning … D'Agostini's new book does this admirably, building an edifice of Bayesian statistical reasoning in the physical sciences on solid foundations.”Journal of the American Statistical Association
Probability and Bayesian Statistics by R. Viertl Pdf
This book contains selected and refereed contributions to the "Inter national Symposium on Probability and Bayesian Statistics" which was orga nized to celebrate the 80th birthday of Professor Bruno de Finetti at his birthplace Innsbruck in Austria. Since Professor de Finetti died in 1985 the symposium was dedicated to the memory of Bruno de Finetti and took place at Igls near Innsbruck from 23 to 26 September 1986. Some of the pa pers are published especially by the relationship to Bruno de Finetti's scientific work. The evolution of stochastics shows growing importance of probability as coherent assessment of numerical values as degrees of believe in certain events. This is the basis for Bayesian inference in the sense of modern statistics. The contributions in this volume cover a broad spectrum ranging from foundations of probability across psychological aspects of formulating sub jective probability statements, abstract measure theoretical considerations, contributions to theoretical statistics and stochastic processes, to real applications in economics, reliability and hydrology. Also the question is raised if it is necessary to develop new techniques to model and analyze fuzzy observations in samples. The articles are arranged in alphabetical order according to the family name of the first author of each paper to avoid a hierarchical ordering of importance of the different topics. Readers interested in special topics can use the index at the end of the book as guide.
National Academies of Sciences, Engineering, and Medicine,Policy and Global Affairs,Committee on Science, Engineering, Medicine, and Public Policy,Board on Research Data and Information,Division on Engineering and Physical Sciences,Committee on Applied and Theoretical Statistics,Board on Mathematical Sciences and Analytics,Division on Earth and Life Studies,Nuclear and Radiation Studies Board,Division of Behavioral and Social Sciences and Education,Committee on National Statistics,Board on Behavioral, Cognitive, and Sensory Sciences,Committee on Reproducibility and Replicability in Science
Author : National Academies of Sciences, Engineering, and Medicine,Policy and Global Affairs,Committee on Science, Engineering, Medicine, and Public Policy,Board on Research Data and Information,Division on Engineering and Physical Sciences,Committee on Applied and Theoretical Statistics,Board on Mathematical Sciences and Analytics,Division on Earth and Life Studies,Nuclear and Radiation Studies Board,Division of Behavioral and Social Sciences and Education,Committee on National Statistics,Board on Behavioral, Cognitive, and Sensory Sciences,Committee on Reproducibility and Replicability in Science Publisher : National Academies Press Page : 257 pages File Size : 41,6 Mb Release : 2019-10-20 Category : Science ISBN : 9780309486163
Reproducibility and Replicability in Science by National Academies of Sciences, Engineering, and Medicine,Policy and Global Affairs,Committee on Science, Engineering, Medicine, and Public Policy,Board on Research Data and Information,Division on Engineering and Physical Sciences,Committee on Applied and Theoretical Statistics,Board on Mathematical Sciences and Analytics,Division on Earth and Life Studies,Nuclear and Radiation Studies Board,Division of Behavioral and Social Sciences and Education,Committee on National Statistics,Board on Behavioral, Cognitive, and Sensory Sciences,Committee on Reproducibility and Replicability in Science Pdf
One of the pathways by which the scientific community confirms the validity of a new scientific discovery is by repeating the research that produced it. When a scientific effort fails to independently confirm the computations or results of a previous study, some fear that it may be a symptom of a lack of rigor in science, while others argue that such an observed inconsistency can be an important precursor to new discovery. Concerns about reproducibility and replicability have been expressed in both scientific and popular media. As these concerns came to light, Congress requested that the National Academies of Sciences, Engineering, and Medicine conduct a study to assess the extent of issues related to reproducibility and replicability and to offer recommendations for improving rigor and transparency in scientific research. Reproducibility and Replicability in Science defines reproducibility and replicability and examines the factors that may lead to non-reproducibility and non-replicability in research. Unlike the typical expectation of reproducibility between two computations, expectations about replicability are more nuanced, and in some cases a lack of replicability can aid the process of scientific discovery. This report provides recommendations to researchers, academic institutions, journals, and funders on steps they can take to improve reproducibility and replicability in science.
Bayesian Statistics for the Social Sciences by David Kaplan Pdf
"Since the publication of the first edition, Bayesian statistics is, arguably, still not the norm in the formal quantitative methods training of social scientists. Typically, the only introduction that a student might have to Bayesian ideas is a brief overview of Bayes' theorem while studying probability in an introductory statistics class. This is not surprising. First, until relatively recently, it was not feasible to conduct statistical modeling from a Bayesian perspective owing to its complexity and lack of available software. Second, Bayesian statistics represents a powerful alternative to frequentist (conventional) statistics and, therefore, can be controversial, especially in the context of null hypothesis significance testing. However, over the last 20 years, or so, considerably progress has been made in the development and application of complex Bayesian statistical methods, due mostly to developments and availability of proprietary and open-source statistical software tools. And, although Bayesian statistics is not quite yet an integral part of the quantitative training of social scientists, there has been increasing interest in the application of Bayesian methods, and it is not unreasonable to say that in terms of theoretical developments and substantive applications, Bayesian statistics has arrived. Because of extensive developments in Bayesian theory and computation since the publication of the first edition of this book, there was a pressing need for a thorough update of the material to reflect new developments in Bayesian methodology and software. The basic foundations of Bayesian statistics remain more or less the same, but this second edition encompasses many new extensions"--
Bayesian Inference: Observations and Applications discusses standard Bayesian inference, in which a-priori distributions are standard probability distributions. In some cases, however, a more general form of a-priori distributions (fuzzy a-priori densities) is suitable to model a-priori information. The combination of fuzziness and stochastic uncertainty calls for a generalization of Bayesian inference, i.e. fuzzy Bayesian inference. The authors explain how Bayes theorem may be generalized to handle this situation. Next, they present a decision analytic framework for completing selection of optimal parameters for machining process definition. In addition, a discussion section on the subjects of inference, experimental design, and risk aversion is included. The concluding review focuses on the sparse Bayesian methods from their model specifications, interference algorithms, and applications in sensor array signal processing. Sparse and structured sparse Bayesian methods formulate problems in a probabilistic manner by constructing a hierarchical model, allowing for the obtainment of flexible modeling capability and statistical information. (Bayesian Inference: Observations and Applications discusses standard Bayesian inference, in which a-priori distributions are standard probability distributions. In some cases, however, a more general form of a-priori distributions (fuzzy a-priori densities) is suitable to model a-priori information. The combination of fuzziness and stochastic uncertainty calls for a generalization of Bayesian inference, i.e. fuzzy Bayesian inference. The authors explain how Bayes theorem may be generalized to handle this situation. Next, they present a decision analytic framework for completing selection of optimal parameters for machining process definition. In addition, a discussion section on the subjects of inference, experimental design, and risk aversion is included. The concluding review focuses on the sparse Bayesian methods from their model specifications, interference algorithms, and applications in sensor array signal processing. Sparse and structured sparse Bayesian methods formulate problems in a probabilistic manner by constructing a hierarchical model, allowing for the obtainment of flexible modeling capability and statistical information.