Computational Biology Of Cancer Lecture Notes And Mathematical Modeling

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Computational Biology of Cancer

Author : Dominik Wodarz,Natalia L. Komarova
Publisher : World Scientific
Page : 268 pages
File Size : 51,9 Mb
Release : 2005
Category : Science
ISBN : 9789812560278

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Computational Biology of Cancer by Dominik Wodarz,Natalia L. Komarova Pdf

- Provides an introduction to computational methods in cancer biology - Follows a multi-disciplinary approach

Introduction to Mathematical Oncology

Author : Yang Kuang,John D. Nagy,Steffen E. Eikenberry
Publisher : CRC Press
Page : 470 pages
File Size : 42,9 Mb
Release : 2016-06-14
Category : Mathematics
ISBN : 9781498785532

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Introduction to Mathematical Oncology by Yang Kuang,John D. Nagy,Steffen E. Eikenberry Pdf

Introduction to Mathematical Oncology presents biologically well-motivated and mathematically tractable models that facilitate both a deep understanding of cancer biology and better cancer treatment designs. It covers the medical and biological background of the diseases, modeling issues, and existing methods and their limitations. The authors introduce mathematical and programming tools, along with analytical and numerical studies of the models. They also develop new mathematical tools and look to future improvements on dynamical models. After introducing the general theory of medicine and exploring how mathematics can be essential in its understanding, the text describes well-known, practical, and insightful mathematical models of avascular tumor growth and mathematically tractable treatment models based on ordinary differential equations. It continues the topic of avascular tumor growth in the context of partial differential equation models by incorporating the spatial structure and physiological structure, such as cell size. The book then focuses on the recent active multi-scale modeling efforts on prostate cancer growth and treatment dynamics. It also examines more mechanistically formulated models, including cell quota-based population growth models, with applications to real tumors and validation using clinical data. The remainder of the text presents abundant additional historical, biological, and medical background materials for advanced and specific treatment modeling efforts. Extensively classroom-tested in undergraduate and graduate courses, this self-contained book allows instructors to emphasize specific topics relevant to clinical cancer biology and treatment. It can be used in a variety of ways, including a single-semester undergraduate course, a more ambitious graduate course, or a full-year sequence on mathematical oncology.

Mathematical and Computational Oncology

Author : George Bebis,Max Alekseyev,Heyrim Cho,Jana Gevertz,Maria Rodriguez Martinez
Publisher : Springer Nature
Page : 133 pages
File Size : 40,9 Mb
Release : 2020-12-07
Category : Computers
ISBN : 9783030645113

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Mathematical and Computational Oncology by George Bebis,Max Alekseyev,Heyrim Cho,Jana Gevertz,Maria Rodriguez Martinez Pdf

This book constitutes the refereed proceedings of the Second International Symposium on Mathematical and Computational Oncology, ISMCO 2020, which was supposed to be held in San Diego, CA, USA, in October 2020, but was instead held virtually due to the COVID-19 pandemic. The 6 full papers and 4 short papers presented together with 1 invited talk were carefully reviewed and selected from 28 submissions. The papers are organized in topical sections named: statistical and machine learning methods for cancer research; mathematical modeling for cancer research; general cancer computational biology; and posters.

Mathematical and Computational Oncology

Author : George Bebis,Terry Gaasterland,Mamoru Kato,Mohammad Kohandel,Kathleen Wilkie
Publisher : Springer Nature
Page : 91 pages
File Size : 44,8 Mb
Release : 2021-12-11
Category : Computers
ISBN : 9783030912413

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Mathematical and Computational Oncology by George Bebis,Terry Gaasterland,Mamoru Kato,Mohammad Kohandel,Kathleen Wilkie Pdf

This book constitutes the refereed proceedings of the Third International Symposium on Mathematical and Computational Oncology, ISMCO 2021, held in October 2021. Due to COVID-19 pandemic the conference was held virtually. The 3 full papers and 4 short papers presented were carefully reviewed and selected from 20 submissions. The papers are organized in topical sections named: statistical and machine learning methods for cancer research; mathematical modeling for cancer research; spatio-temporal tumor modeling and simulation; general cancer computational biology; mathematical modeling for cancer research; computational methods for anticancer drug development.

Computational Biology Of Cancer: Lecture Notes And Mathematical Modeling

Author : Dominik Wodarz,Natalia Komarova
Publisher : World Scientific
Page : 266 pages
File Size : 46,8 Mb
Release : 2005-01-24
Category : Science
ISBN : 9789814481878

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Computational Biology Of Cancer: Lecture Notes And Mathematical Modeling by Dominik Wodarz,Natalia Komarova Pdf

The book shows how mathematical and computational models can be used to study cancer biology. It introduces the concept of mathematical modeling and then applies it to a variety of topics in cancer biology. These include aspects of cancer initiation and progression, such as the somatic evolution of cells, genetic instability, and angiogenesis. The book also discusses the use of mathematical models for the analysis of therapeutic approaches such as chemotherapy, immunotherapy, and the use of oncolytic viruses.

An Introduction to Physical Oncology

Author : Vittorio Cristini,Eugene Koay,Zhihui Wang
Publisher : CRC Press
Page : 303 pages
File Size : 46,8 Mb
Release : 2017-06-26
Category : Mathematics
ISBN : 9781315356884

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An Introduction to Physical Oncology by Vittorio Cristini,Eugene Koay,Zhihui Wang Pdf

Physical oncology has the potential to revolutionize cancer research and treatment. The fundamental rationale behind this approach is that physical processes, such as transport mechanisms for drug molecules within tissue and forces exchanged by cancer cells with tissue, may play an equally important role as biological processes in influencing progression and treatment outcome. This book introduces the emerging field of physical oncology to a general audience, with a focus on recent breakthroughs that help in the design and discovery of more effective cancer treatments. It describes how novel mathematical models of physical transport processes incorporate patient tissue and imaging data routinely produced in the clinic to predict the efficacy of many cancer treatment approaches, including chemotherapy and radiation therapy. By helping to identify which therapies would be most beneficial for an individual patient, and quantifying their effects prior to actual implementation in the clinic, physical oncology allows doctors to design treatment regimens customized to each patient’s clinical needs, significantly altering the current clinical approach to cancer treatment and improving the outcomes for patients.

Mathematical and Computational Oncology

Author : George Bebis,Terry Gaasterland,Mamoru Kato,Mohammad Kohandel,Kathleen Wilkie
Publisher : Unknown
Page : 0 pages
File Size : 41,7 Mb
Release : 2021
Category : Computer organization
ISBN : 3030912426

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Mathematical and Computational Oncology by George Bebis,Terry Gaasterland,Mamoru Kato,Mohammad Kohandel,Kathleen Wilkie Pdf

This book constitutes the refereed proceedings of the Third International Symposium on Mathematical and Computational Oncology, ISMCO 2021, held in October 2021. Due to COVID-19 pandemic the conference was held virtually. The 3 full papers and 4 short papers presented were carefully reviewed and selected from 20 submissions. The papers are organized in topical sections named: statistical and machine learning methods for cancer research; mathematical modeling for cancer research; spatio-temporal tumor modeling and simulation; general cancer computational biology; mathematical modeling for cancer research; computational methods for anticancer drug development.

Computational Systems Biology of Cancer

Author : Emmanuel Barillot,Laurence Calzone,Philippe Hupe,Jean-Philippe Vert,Andrei Zinovyev
Publisher : CRC Press
Page : 461 pages
File Size : 42,8 Mb
Release : 2012-08-25
Category : Computers
ISBN : 9781439831458

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Computational Systems Biology of Cancer by Emmanuel Barillot,Laurence Calzone,Philippe Hupe,Jean-Philippe Vert,Andrei Zinovyev Pdf

The future of cancer research and the development of new therapeutic strategies rely on our ability to convert biological and clinical questions into mathematical models-integrating our knowledge of tumour progression mechanisms with the tsunami of information brought by high-throughput technologies such as microarrays and next-generation sequencin

Multiscale Models in Mechano and Tumor Biology

Author : Alf Gerisch,Raimondo Penta,Jens Lang
Publisher : Springer
Page : 195 pages
File Size : 54,7 Mb
Release : 2018-03-16
Category : Mathematics
ISBN : 9783319733715

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Multiscale Models in Mechano and Tumor Biology by Alf Gerisch,Raimondo Penta,Jens Lang Pdf

This book presents and discusses the state of the art and future perspectives in mathematical modeling and homogenization techniques with the focus on addressing key physiological issues in the context of multiphase healthy and malignant biological materials. The highly interdisciplinary content brings together contributions from scientists with complementary areas of expertise, such as pure and applied mathematicians, engineers, and biophysicists. The book also features the lecture notes from a half-day introductory course on asymptotic homogenization. These notes are suitable for undergraduate mathematics or physics students, while the other chapters are aimed at graduate students and researchers.

Mathematical Modeling of Biological Processes

Author : Avner Friedman,Chiu-Yen Kao
Publisher : Springer
Page : 154 pages
File Size : 52,9 Mb
Release : 2014-09-19
Category : Mathematics
ISBN : 9783319083148

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Mathematical Modeling of Biological Processes by Avner Friedman,Chiu-Yen Kao Pdf

This book on mathematical modeling of biological processes includes a wide selection of biological topics that demonstrate the power of mathematics and computational codes in setting up biological processes with a rigorous and predictive framework. Topics include: enzyme dynamics, spread of disease, harvesting bacteria, competition among live species, neuronal oscillations, transport of neurofilaments in axon, cancer and cancer therapy, and granulomas. Complete with a description of the biological background and biological question that requires the use of mathematics, this book is developed for graduate students and advanced undergraduate students with only basic knowledge of ordinary differential equations and partial differential equations; background in biology is not required. Students will gain knowledge on how to program with MATLAB without previous programming experience and how to use codes in order to test biological hypothesis.

Mathematical Methods for Cancer Evolution

Author : Takashi Suzuki
Publisher : Springer
Page : 144 pages
File Size : 41,9 Mb
Release : 2017-06-13
Category : Mathematics
ISBN : 9789811036712

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Mathematical Methods for Cancer Evolution by Takashi Suzuki Pdf

The purpose of this monograph is to describe recent developments in mathematical modeling and mathematical analysis of certain problems arising from cell biology. Cancer cells and their growth via several stages are of particular interest. To describe these events, multi-scale models are applied, involving continuously distributed environment variables and several components related to particles. Hybrid simulations are also carried out, using discretization of environment variables and the Monte Carlo method for the principal particle variables. Rigorous mathematical foundations are the bases of these tools.The monograph is composed of four chapters. The first three chapters are concerned with modeling, while the last one is devoted to mathematical analysis. The first chapter deals with molecular dynamics occurring at the early stage of cancer invasion. A pathway network model based on a biological scenario is constructed, and then its mathematical structures are determined. In the second chapter mathematical modeling is introduced, overviewing several biological insights, using partial differential equations. Transport and gradient are the main factors, and several models are introduced including the Keller‒Segel systems. The third chapter treats the method of averaging to model the movement of particles, based on mean field theories, employing deterministic and stochastic approaches. Then appropriate parameters for stochastic simulations are examined. The segment model is finally proposed as an application. In the fourth chapter, thermodynamic features of these models and how these structures are applied in mathematical analysis are examined, that is, negative chemotaxis, parabolic systems with non-local term accounting for chemical reactions, mass-conservative reaction-diffusion systems, and competitive systems of chemotaxis. The monograph concludes with the method of the weak scaling limit applied to the Smoluchowski‒Poisson equation.

Computational Cancer Biology

Author : Mathukumalli Vidyasagar
Publisher : Springer Science & Business Media
Page : 80 pages
File Size : 54,8 Mb
Release : 2012-11-28
Category : Computers
ISBN : 9781447147510

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Computational Cancer Biology by Mathukumalli Vidyasagar Pdf

This brief introduces people with a basic background in probability theory to various problems in cancer biology that are amenable to analysis using methods of probability theory and statistics. The title mentions “cancer biology” and the specific illustrative applications reference cancer data but the methods themselves are more broadly applicable to all aspects of computational biology. Aside from providing a self-contained introduction to basic biology and to cancer, the brief describes four specific problems in cancer biology that are amenable to the application of probability-based methods. The application of these methods is illustrated by applying each of them to actual data from the biology literature. After reading the brief, engineers and mathematicians should be able to collaborate fruitfully with their biologist colleagues on a wide variety of problems.

Mathematical Modelling of Biosystems

Author : Rubem P. Mondaini,Panos M. Pardalos
Publisher : Springer Science & Business Media
Page : 305 pages
File Size : 53,5 Mb
Release : 2008-02-23
Category : Mathematics
ISBN : 9783540767848

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Mathematical Modelling of Biosystems by Rubem P. Mondaini,Panos M. Pardalos Pdf

This volume is an interdisciplinary book which introduces, in a very readable way, state-of-the-art research in the fundamental topics of mathematical modelling of Biosystems. In short, the book offers an overview of mathematical and computational modelling of biosystems including biological phenomena in general. There is also a special introduction to Protein Physics which aims to explain the all-or-none first order phase transitions from native to denatured states.

Multiscale Modeling of Cancer

Author : Vittorio Cristini,John Lowengrub
Publisher : Cambridge University Press
Page : 299 pages
File Size : 54,7 Mb
Release : 2010-09-09
Category : Technology & Engineering
ISBN : 9781139491501

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Multiscale Modeling of Cancer by Vittorio Cristini,John Lowengrub Pdf

Mathematical modeling, analysis and simulation are set to play crucial roles in explaining tumor behavior, and the uncontrolled growth of cancer cells over multiple time and spatial scales. This book, the first to integrate state-of-the-art numerical techniques with experimental data, provides an in-depth assessment of tumor cell modeling at multiple scales. The first part of the text presents a detailed biological background with an examination of single-phase and multi-phase continuum tumor modeling, discrete cell modeling, and hybrid continuum-discrete modeling. In the final two chapters, the authors guide the reader through problem-based illustrations and case studies of brain and breast cancer, to demonstrate the future potential of modeling in cancer research. This book has wide interdisciplinary appeal and is a valuable resource for mathematical biologists, biomedical engineers and clinical cancer research communities wishing to understand this emerging field.

Tutorials in Mathematical Biosciences III

Author : Avner Friedman
Publisher : Springer
Page : 246 pages
File Size : 42,9 Mb
Release : 2005-11-24
Category : Mathematics
ISBN : 9783540324157

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Tutorials in Mathematical Biosciences III by Avner Friedman Pdf

This volume introduces some basic mathematical models for cell cycle, proliferation, cancer, and cancer therapy. Chapter 1 gives an overview of the modeling of the cell division cycle. Chapter 2 describes how tumor secretes growth factors to form new blood vessels in its vicinity, which provide it with nutrients it needs in order to grow. Chapter 3 explores the process that enables the tumor to invade the neighboring tissue. Chapter 4 models the interaction between a tumor and the immune system. Chapter 5 is concerned with chemotherapy; it uses concepts from control theory to minimize obstacles arising from drug resistance and from cell cycle dynamics. Finally, Chapter 6 reviews mathematical results for various cancer models.