Learning Probabilistic Graphical Models In R

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Learning Probabilistic Graphical Models in R

Author : David Bellot
Publisher : Packt Publishing Ltd
Page : 250 pages
File Size : 51,5 Mb
Release : 2016-04-29
Category : Computers
ISBN : 9781784397418

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Learning Probabilistic Graphical Models in R by David Bellot Pdf

Familiarize yourself with probabilistic graphical models through real-world problems and illustrative code examples in R About This Book Predict and use a probabilistic graphical models (PGM) as an expert system Comprehend how your computer can learn Bayesian modeling to solve real-world problems Know how to prepare data and feed the models by using the appropriate algorithms from the appropriate R package Who This Book Is For This book is for anyone who has to deal with lots of data and draw conclusions from it, especially when the data is noisy or uncertain. Data scientists, machine learning enthusiasts, engineers, and those who curious about the latest advances in machine learning will find PGM interesting. What You Will Learn Understand the concepts of PGM and which type of PGM to use for which problem Tune the model's parameters and explore new models automatically Understand the basic principles of Bayesian models, from simple to advanced Transform the old linear regression model into a powerful probabilistic model Use standard industry models but with the power of PGM Understand the advanced models used throughout today's industry See how to compute posterior distribution with exact and approximate inference algorithms In Detail Probabilistic graphical models (PGM, also known as graphical models) are a marriage between probability theory and graph theory. Generally, PGMs use a graph-based representation. Two branches of graphical representations of distributions are commonly used, namely Bayesian networks and Markov networks. R has many packages to implement graphical models. We'll start by showing you how to transform a classical statistical model into a modern PGM and then look at how to do exact inference in graphical models. Proceeding, we'll introduce you to many modern R packages that will help you to perform inference on the models. We will then run a Bayesian linear regression and you'll see the advantage of going probabilistic when you want to do prediction. Next, you'll master using R packages and implementing its techniques. Finally, you'll be presented with machine learning applications that have a direct impact in many fields. Here, we'll cover clustering and the discovery of hidden information in big data, as well as two important methods, PCA and ICA, to reduce the size of big problems. Style and approach This book gives you a detailed and step-by-step explanation of each mathematical concept, which will help you build and analyze your own machine learning models and apply them to real-world problems. The mathematics is kept simple and each formula is explained thoroughly.

Graphical Models with R

Author : Søren Højsgaard,David Edwards,Steffen Lauritzen
Publisher : Springer Science & Business Media
Page : 182 pages
File Size : 53,6 Mb
Release : 2012-02-22
Category : Mathematics
ISBN : 9781461422990

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Graphical Models with R by Søren Højsgaard,David Edwards,Steffen Lauritzen Pdf

Graphical models in their modern form have been around since the late 1970s and appear today in many areas of the sciences. Along with the ongoing developments of graphical models, a number of different graphical modeling software programs have been written over the years. In recent years many of these software developments have taken place within the R community, either in the form of new packages or by providing an R interface to existing software. This book attempts to give the reader a gentle introduction to graphical modeling using R and the main features of some of these packages. In addition, the book provides examples of how more advanced aspects of graphical modeling can be represented and handled within R. Topics covered in the seven chapters include graphical models for contingency tables, Gaussian and mixed graphical models, Bayesian networks and modeling high dimensional data.

Graphical Models

Author : Christian Borgelt,Matthias Steinbrecher,Rudolf R Kruse
Publisher : John Wiley & Sons
Page : 404 pages
File Size : 53,9 Mb
Release : 2009-07-30
Category : Mathematics
ISBN : 0470749563

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Graphical Models by Christian Borgelt,Matthias Steinbrecher,Rudolf R Kruse Pdf

Graphical models are of increasing importance in applied statistics, and in particular in data mining. Providing a self-contained introduction and overview to learning relational, probabilistic, and possibilistic networks from data, this second edition of Graphical Models is thoroughly updated to include the latest research in this burgeoning field, including a new chapter on visualization. The text provides graduate students, and researchers with all the necessary background material, including modelling under uncertainty, decomposition of distributions, graphical representation of distributions, and applications relating to graphical models and problems for further research.

Learning in Graphical Models

Author : Michael Irwin Jordan
Publisher : MIT Press
Page : 652 pages
File Size : 48,7 Mb
Release : 1999
Category : Computers
ISBN : 0262600323

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Learning in Graphical Models by Michael Irwin Jordan Pdf

Presents an exploration of issues related to learning within the graphical model formalism. This text covers topics such as: inference for Bayesian networks; Monte Carlo methods; variational methods; and learning with Bayesian networks.

Building Probabilistic Graphical Models with Python

Author : Kiran R. Karkera
Publisher : Unknown
Page : 172 pages
File Size : 46,5 Mb
Release : 2014
Category : Graphical modeling (Statistics)
ISBN : 1306902878

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Building Probabilistic Graphical Models with Python by Kiran R. Karkera Pdf

"This is a short, practical guide that allows data scientists to understand the concepts of Graphical models and enables them to try them out using small Python code snippets, without being too mathematically complicated. If you are a data scientist who knows about machine learning and want to enhance your knowledge of graphical models, such as Bayes network, in order to use them to solve real-world problems using Python libraries, this book is for you.This book is intended for those who have some Python and machine learning experience, or are exploring the machine learning field."

Mastering Probabilistic Graphical Models Using Python

Author : Ankur Ankan,Abinash Panda
Publisher : Packt Publishing Ltd
Page : 284 pages
File Size : 55,6 Mb
Release : 2015-08-03
Category : Computers
ISBN : 9781784395216

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Mastering Probabilistic Graphical Models Using Python by Ankur Ankan,Abinash Panda Pdf

Master probabilistic graphical models by learning through real-world problems and illustrative code examples in Python About This Book Gain in-depth knowledge of Probabilistic Graphical Models Model time-series problems using Dynamic Bayesian Networks A practical guide to help you apply PGMs to real-world problems Who This Book Is For If you are a researcher or a machine learning enthusiast, or are working in the data science field and have a basic idea of Bayesian Learning or Probabilistic Graphical Models, this book will help you to understand the details of Graphical Models and use it in your data science problems. This book will also help you select the appropriate model as well as the appropriate algorithm for your problem. What You Will Learn Get to know the basics of Probability theory and Graph Theory Work with Markov Networks Implement Bayesian Networks Exact Inference Techniques in Graphical Models such as the Variable Elimination Algorithm Understand approximate Inference Techniques in Graphical Models such as Message Passing Algorithms Sample algorithms in Graphical Models Grasp details of Naive Bayes with real-world examples Deploy PGMs using various libraries in Python Gain working details of Hidden Markov Models with real-world examples In Detail Probabilistic Graphical Models is a technique in machine learning that uses the concepts of graph theory to compactly represent and optimally predict values in our data problems. In real world problems, it's often difficult to select the appropriate graphical model as well as the appropriate inference algorithm, which can make a huge difference in computation time and accuracy. Thus, it is crucial to know the working details of these algorithms. This book starts with the basics of probability theory and graph theory, then goes on to discuss various models and inference algorithms. All the different types of models are discussed along with code examples to create and modify them, and also to run different inference algorithms on them. There is a complete chapter devoted to the most widely used networks Naive Bayes Model and Hidden Markov Models (HMMs). These models have been thoroughly discussed using real-world examples. Style and approach An easy-to-follow guide to help you understand Probabilistic Graphical Models using simple examples and numerous code examples, with an emphasis on more widely used models.

Probabilistic Graphical Models

Author : Daphne Koller,Nir Friedman
Publisher : MIT Press
Page : 1270 pages
File Size : 50,7 Mb
Release : 2009-07-31
Category : Computers
ISBN : 9780262258357

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Probabilistic Graphical Models by Daphne Koller,Nir Friedman Pdf

A general framework for constructing and using probabilistic models of complex systems that would enable a computer to use available information for making decisions. Most tasks require a person or an automated system to reason—to reach conclusions based on available information. The framework of probabilistic graphical models, presented in this book, provides a general approach for this task. The approach is model-based, allowing interpretable models to be constructed and then manipulated by reasoning algorithms. These models can also be learned automatically from data, allowing the approach to be used in cases where manually constructing a model is difficult or even impossible. Because uncertainty is an inescapable aspect of most real-world applications, the book focuses on probabilistic models, which make the uncertainty explicit and provide models that are more faithful to reality. Probabilistic Graphical Models discusses a variety of models, spanning Bayesian networks, undirected Markov networks, discrete and continuous models, and extensions to deal with dynamical systems and relational data. For each class of models, the text describes the three fundamental cornerstones: representation, inference, and learning, presenting both basic concepts and advanced techniques. Finally, the book considers the use of the proposed framework for causal reasoning and decision making under uncertainty. The main text in each chapter provides the detailed technical development of the key ideas. Most chapters also include boxes with additional material: skill boxes, which describe techniques; case study boxes, which discuss empirical cases related to the approach described in the text, including applications in computer vision, robotics, natural language understanding, and computational biology; and concept boxes, which present significant concepts drawn from the material in the chapter. Instructors (and readers) can group chapters in various combinations, from core topics to more technically advanced material, to suit their particular needs.

Graphical Models, Exponential Families, and Variational Inference

Author : Martin J. Wainwright,Michael Irwin Jordan
Publisher : Now Publishers Inc
Page : 324 pages
File Size : 46,5 Mb
Release : 2008
Category : Computers
ISBN : 9781601981844

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Graphical Models, Exponential Families, and Variational Inference by Martin J. Wainwright,Michael Irwin Jordan Pdf

The core of this paper is a general set of variational principles for the problems of computing marginal probabilities and modes, applicable to multivariate statistical models in the exponential family.

Advances in Probabilistic Graphical Models

Author : Peter Lucas,José A. Gámez,Antonio Salmerón Cerdan
Publisher : Springer
Page : 386 pages
File Size : 45,8 Mb
Release : 2009-09-02
Category : Mathematics
ISBN : 3540834346

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Advances in Probabilistic Graphical Models by Peter Lucas,José A. Gámez,Antonio Salmerón Cerdan Pdf

This book brings together important topics of current research in probabilistic graphical modeling, learning from data and probabilistic inference. Coverage includes such topics as the characterization of conditional independence, the learning of graphical models with latent variables, and extensions to the influence diagram formalism as well as important application fields, such as the control of vehicles, bioinformatics and medicine.

Bayesian Networks

Author : Marco Scutari,Jean-Baptiste Denis
Publisher : CRC Press
Page : 275 pages
File Size : 44,8 Mb
Release : 2021-07-28
Category : Computers
ISBN : 9781000410389

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Bayesian Networks by Marco Scutari,Jean-Baptiste Denis Pdf

Explains the material step-by-step starting from meaningful examples Steps detailed with R code in the spirit of reproducible research Real world data analyses from a Science paper reproduced and explained in detail Examples span a variety of fields across social and life sciences Overview of available software in and outside R

Learning Bayesian Models with R

Author : Dr. Hari M. Koduvely
Publisher : Packt Publishing Ltd
Page : 168 pages
File Size : 41,7 Mb
Release : 2015-10-28
Category : Computers
ISBN : 9781783987610

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Learning Bayesian Models with R by Dr. Hari M. Koduvely Pdf

Become an expert in Bayesian Machine Learning methods using R and apply them to solve real-world big data problems About This Book Understand the principles of Bayesian Inference with less mathematical equations Learn state-of-the art Machine Learning methods Familiarize yourself with the recent advances in Deep Learning and Big Data frameworks with this step-by-step guide Who This Book Is For This book is for statisticians, analysts, and data scientists who want to build a Bayes-based system with R and implement it in their day-to-day models and projects. It is mainly intended for Data Scientists and Software Engineers who are involved in the development of Advanced Analytics applications. To understand this book, it would be useful if you have basic knowledge of probability theory and analytics and some familiarity with the programming language R. What You Will Learn Set up the R environment Create a classification model to predict and explore discrete variables Get acquainted with Probability Theory to analyze random events Build Linear Regression models Use Bayesian networks to infer the probability distribution of decision variables in a problem Model a problem using Bayesian Linear Regression approach with the R package BLR Use Bayesian Logistic Regression model to classify numerical data Perform Bayesian Inference on massively large data sets using the MapReduce programs in R and Cloud computing In Detail Bayesian Inference provides a unified framework to deal with all sorts of uncertainties when learning patterns form data using machine learning models and use it for predicting future observations. However, learning and implementing Bayesian models is not easy for data science practitioners due to the level of mathematical treatment involved. Also, applying Bayesian methods to real-world problems requires high computational resources. With the recent advances in computation and several open sources packages available in R, Bayesian modeling has become more feasible to use for practical applications today. Therefore, it would be advantageous for all data scientists and engineers to understand Bayesian methods and apply them in their projects to achieve better results. Learning Bayesian Models with R starts by giving you a comprehensive coverage of the Bayesian Machine Learning models and the R packages that implement them. It begins with an introduction to the fundamentals of probability theory and R programming for those who are new to the subject. Then the book covers some of the important machine learning methods, both supervised and unsupervised learning, implemented using Bayesian Inference and R. Every chapter begins with a theoretical description of the method explained in a very simple manner. Then, relevant R packages are discussed and some illustrations using data sets from the UCI Machine Learning repository are given. Each chapter ends with some simple exercises for you to get hands-on experience of the concepts and R packages discussed in the chapter. The last chapters are devoted to the latest development in the field, specifically Deep Learning, which uses a class of Neural Network models that are currently at the frontier of Artificial Intelligence. The book concludes with the application of Bayesian methods on Big Data using the Hadoop and Spark frameworks. Style and approach The book first gives you a theoretical description of the Bayesian models in simple language, followed by details of its implementation in the R package. Each chapter has illustrations for the use of Bayesian model and the corresponding R package, using data sets from the UCI Machine Learning repository. Each chapter also contains sufficient exercises for you to get more hands-on practice.

Probabilistic Graphical Models

Author : Luis Enrique Sucar
Publisher : Springer Nature
Page : 370 pages
File Size : 41,6 Mb
Release : 2020-12-23
Category : Computers
ISBN : 9783030619435

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Probabilistic Graphical Models by Luis Enrique Sucar Pdf

This fully updated new edition of a uniquely accessible textbook/reference provides a general introduction to probabilistic graphical models (PGMs) from an engineering perspective. It features new material on partially observable Markov decision processes, causal graphical models, causal discovery and deep learning, as well as an even greater number of exercises; it also incorporates a software library for several graphical models in Python. The book covers the fundamentals for each of the main classes of PGMs, including representation, inference and learning principles, and reviews real-world applications for each type of model. These applications are drawn from a broad range of disciplines, highlighting the many uses of Bayesian classifiers, hidden Markov models, Bayesian networks, dynamic and temporal Bayesian networks, Markov random fields, influence diagrams, and Markov decision processes. Topics and features: Presents a unified framework encompassing all of the main classes of PGMs Explores the fundamental aspects of representation, inference and learning for each technique Examines new material on partially observable Markov decision processes, and graphical models Includes a new chapter introducing deep neural networks and their relation with probabilistic graphical models Covers multidimensional Bayesian classifiers, relational graphical models, and causal models Provides substantial chapter-ending exercises, suggestions for further reading, and ideas for research or programming projects Describes classifiers such as Gaussian Naive Bayes, Circular Chain Classifiers, and Hierarchical Classifiers with Bayesian Networks Outlines the practical application of the different techniques Suggests possible course outlines for instructors This classroom-tested work is suitable as a textbook for an advanced undergraduate or a graduate course in probabilistic graphical models for students of computer science, engineering, and physics. Professionals wishing to apply probabilistic graphical models in their own field, or interested in the basis of these techniques, will also find the book to be an invaluable reference. Dr. Luis Enrique Sucar is a Senior Research Scientist at the National Institute for Astrophysics, Optics and Electronics (INAOE), Puebla, Mexico. He received the National Science Prize en 2016.

Machine Learning and Probabilistic Graphical Models for Decision Support Systems

Author : Kim Phuc Tran
Publisher : CRC Press
Page : 330 pages
File Size : 42,9 Mb
Release : 2022-10-13
Category : Computers
ISBN : 9781000771442

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Machine Learning and Probabilistic Graphical Models for Decision Support Systems by Kim Phuc Tran Pdf

This book presents recent advancements in research, a review of new methods and techniques, and applications in decision support systems (DSS) with Machine Learning and Probabilistic Graphical Models, which are very effective techniques in gaining knowledge from Big Data and in interpreting decisions. It explores Bayesian network learning, Control Chart, Reinforcement Learning for multicriteria DSS, Anomaly Detection in Smart Manufacturing with Federated Learning, DSS in healthcare, DSS for supply chain management, etc. Researchers and practitioners alike will benefit from this book to enhance the understanding of machine learning, Probabilistic Graphical Models, and their uses in DSS in the context of decision making with uncertainty. The real-world case studies in various fields with guidance and recommendations for the practical applications of these studies are introduced in each chapter.

Probabilistic Graphical Models for Genetics, Genomics and Postgenomics

Author : Christine Sinoquet,Raphaël Mourad
Publisher : Oxford University Press, USA
Page : 483 pages
File Size : 43,8 Mb
Release : 2014
Category : Mathematics
ISBN : 9780198709022

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Probabilistic Graphical Models for Genetics, Genomics and Postgenomics by Christine Sinoquet,Raphaël Mourad Pdf

At the crossroads between statistics and machine learning, probabilistic graphical models (PGMs) provide a powerful formal framework to model complex data. An expanding volume of biological data of various types, the so-called 'omics', is in need of accurate and efficient methods for modelling and PGMs are expected to have a prominent role to play. This book provides an overview of the applications of PGMs to genetics, genomics and postgenomics to meet this increased interest.

Handbook of Graphical Models

Author : Marloes Maathuis,Mathias Drton,Steffen Lauritzen,Martin Wainwright
Publisher : CRC Press
Page : 666 pages
File Size : 53,6 Mb
Release : 2018-11-12
Category : Mathematics
ISBN : 9780429874239

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Handbook of Graphical Models by Marloes Maathuis,Mathias Drton,Steffen Lauritzen,Martin Wainwright Pdf

A graphical model is a statistical model that is represented by a graph. The factorization properties underlying graphical models facilitate tractable computation with multivariate distributions, making the models a valuable tool with a plethora of applications. Furthermore, directed graphical models allow intuitive causal interpretations and have become a cornerstone for causal inference. While there exist a number of excellent books on graphical models, the field has grown so much that individual authors can hardly cover its entire scope. Moreover, the field is interdisciplinary by nature. Through chapters by leading researchers from different areas, this handbook provides a broad and accessible overview of the state of the art. Key features: * Contributions by leading researchers from a range of disciplines * Structured in five parts, covering foundations, computational aspects, statistical inference, causal inference, and applications * Balanced coverage of concepts, theory, methods, examples, and applications * Chapters can be read mostly independently, while cross-references highlight connections The handbook is targeted at a wide audience, including graduate students, applied researchers, and experts in graphical models.