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Organelles, Genomes and Eukaryote Phylogeny by Robert P Hirt,David S. Horner Pdf
The recent revolution in molecular biology has spread through every field of biology including systematics and evolution. Researchers can now analyze the genomes of different species relatively quickly, and this is generating a great deal of data and theories about relationships between taxa as well as how they originated and diversified. Org
Mitochondria and chloroplasts are eukaryotic organelles that evolved from bacterial ancestors and harbor their own genomes. The gene products of these genomes work in concert with those of the nuclear genome to ensure proper organelle metabolism and biogenesis. This book explores the forces that have shaped the evolution of organelle genomes and the expression of the genes encoded by them. Some striking examples of trends in organelle evolution explored here are the reduction in genome size and gene coding content observed in most lineages, the complete loss of organelle DNA in certain lineages, and the unusual modes of gene expression that have emerged, such as the extensive and essential mRNA editing that occurs in plant mitochondria and chloroplasts. This book places particular emphasis on the current techniques used to study the evolution of organelle genomes and gene expression.
Mitochondria and chloroplasts are eukaryotic organelles that evolved from bacterial ancestors and harbor their own genomes. The gene products of these genomes work in concert with those of the nuclear genome to ensure proper organelle metabolism and biogenesis. This book explores the forces that have shaped the evolution of organelle genomes and the expression of the genes encoded by them. Some striking examples of trends in organelle evolution explored here are the reduction in genome size and gene coding content observed in most lineages, the complete loss of organelle DNA in certain lineages, and the unusual modes of gene expression that have emerged, such as the extensive and essential mRNA editing that occurs in plant mitochondria and chloroplasts. This book places particular emphasis on the current techniques used to study the evolution of organelle genomes and gene expression.
Eukaryotism and Symbiosis by Hainfried E.A. Schenk,Reinhold G. Herrmann,Kwang W. Jeon,Norbert E. Müller,Werner Schwemmler Pdf
New techniques in molecular biology have brought spectacular new insights into the study of evolution at the molecular level. This book presents the resulting relatively new concept of "molecular phylogeny", with an overview of current accomplishments and the future direction of research on organelle origin and evolution and the biology of the "higher cell".
Genomics and Evolution of Microbial Eukaryotes by Laura Katz Olson Pdf
This book represents a unique combination of recently-emerged information on eukaryotic microbes, evolution and genomics. Eukaryotes, cells with nuclei, evolved as microbes and have existed on Earth for approximately 2 billion years. Although currently relatively understudied, eukaryotic microorganisms are of critical importance to ecosystems (through their involvement in global biogeochemical cycles), human health (they include some of the deadliest pathogens), and our desire tounderstand global biodiversity. Recent advances, particularly in DNA sequencing technologies, are making eukaryotic microbes more accessible through genome analyses. Insights from these studies are challenging previously held theories of genome evolution, based on studies of a limited number of plants,animals and fungi.
Genomics and Evolution of Microbial Eukaryotes by Laura A Katz,Debashish Bhattacharya Pdf
Genomics and Evolution of Eukaryotic Microbes synthesizes the rapidly emerging fields of eukaryotic diversity and genome evolution. Eukaryotes (cells with nuclei) evolved as microbes and have existed on Earth for approximately two billion years. The tremendous diversity of eukaryotic microbes (protists) is often overlooked by those who study the macroscopic eukaryotic lineages: plants, animals, and fungi. Yet, eukaryotic microbes are of critical importance to ecosystems, human health, and our desire to understand biodiversity on Earth. By bringing together groundbreaking data from genome studies of diverse eukaryotic microbes, this book elucidates the many novelties among eukaryotic genomes and provides a single resource for otherwise widely dispersed information. Eukaryotic microorganisms impact both our health and our environment. These organisms include some of the deadliest known pathogens such as Plasmodium falciparum, a causative agent of malaria, and Entamoeba histolytica an agent of dysentery. Eukaryotic microbes also play a significant role in environments through their involvement in global biogeochemical cycles. Such roles are perhaps best exemplified by the coccolithophores, including the species Emiliania huxleyi, which can create 'blooms' in the oceans that are visible from outer space (i.e. as large as the state of Alaska). Despite the great importance and breadth of eukaryotic microbes (the vast majority of major ukaryotic lineages are microbial, with plants, animals and fungi representing just three of an estimated 60-200 major lineages), our understanding of their diversity and phylogeny is only now rapidly expanding, in part bolstered by genomic studies. This book presents analyses and interpretations from experts in the field. Recent advances, particularly in DNA sequencing technologies, have made eukaryotic microbes more accessible to genome analyses. Unravelling the wealth of information on eukaryotic genomes will invariably revolutionize our understanding of eukaryotes, including their physiology, systematics, and ecology.
Environmental and Microbial Relationships by Christian P. Kubicek,Irina S. Druzhinina Pdf
This volume provides insight into current research on fungal populations and communities. It focuses on fungal responses to the physical environment, interactions with other fungi, microorganisms and invertebrates, the role of fungi in ecosystem processes such as decomposition and nutrient cycling, and aspects of biogeography and conservation. The second edition has been completely updated and revised to accommodate the introduction of molecular methods, and the flood of new findings since then.
Molecular Biology and Biotechnology of Plant Organelles by Henry Daniell, Ph.D.,Christine D. Chase Pdf
We have taught plant molecular biology and biotechnology at the undergraduate and graduate level for over 20 years. In the past few decades, the field of plant organelle molecular biology and biotechnology has made immense strides. From the green revolution to golden rice, plant organelles have revolutionized agriculture. Given the exponential growth in research, the problem of finding appropriate textbooks for courses in plant biotechnology and molecular biology has become a major challenge. After years of handing out photocopies of various journal articles and reviews scattered through out the print and electronic media, a serendipitous meeting occurred at the 2002 IATPC World Congress held in Orlando, Florida. After my talk and evaluating several posters presented by investigators from my laboratory, Dr. Jacco Flipsen, Publishing Manager of Kluwer Publishers asked me whether I would consider editing a book on Plant Organelles. I accepted this challenge, after months of deliberations, primarily because I was unsuccessful in finding a text book in this area for many years. I signed the contract with Kluwer in March 2003 with a promise to deliver a camera-ready textbook on July 1, 2004. Given the short deadline and the complexity of the task, I quickly realized this task would need a co-editor. Dr. Christine Chase was the first scientist who came to my mind because of her expertise in plant mitochondria, and she readily agreed to work with me on this book.
Eukaryotic Membranes and Cytoskeleton by Gáspár Jékely Pdf
The presence/absence of gene families with central roles in endomembrane and cytoskeleton dynamics in a variety of eukaryotic taxa and an understanding of eukaryote phylogeny allow the cellular machineries present in the last common ancestor of eukaryotes to be accurately reconstructed. Such a reconstruction is fundamental in order to understand eukaryotic diversification, since this is the ancestral cell from which all diversity arose. This book discusses the evolutionary origin and diversification of eukaryotic endomembranes and cytoskeleton from a cell biological and comparative genomic perspective.
Origin of Mitochondria and Hydrogenosomes by William F. Martin,Miklós Müller Pdf
The evolutionary origins of hydrogenosomes have been the subject of considerable debate. This volume closes the gap between the endosymbiotic theory for the origin of organelles and their incorporation into evolutionary theory. It reveals that identifying the genetic contribution to eukaryotes of the mitochondrial endosymbiosis, and revealing the functions of its descendent organelles, are key to understanding eukaryotic biology and evolution.
Unravelling the algae by Juliet Brodie,Jane Lewis Pdf
Acting as titans in global control of the biosphere and colonizing virtually all corners of the earth, algae, extremely diverse and numerous oxygenic, photosynthetic organisms, can be major players in and drivers of environmental change. For hundreds of years, since their evolutionary origins by endosymbiosis, when a protozoan enslaved a cyanobacterium, fascinated scientists strove to uncover the mysteries of their diversity, interactions, taxonomy, and classification. Today, new molecular tools and technologies like chromatography and genetic fingerprinting reveal the innermost secrets of algal ancestry and phylogeny and open new possibilities to answering age-old questions. Unravelling the algae: the past, present, and future of algal systematics brings together the most respected minds in the field to review the state-of-the-science and assess the impact of molecular tools on the taxonomy of algal groups. Emphasizing that a range of traditional and molecular approaches are required, along with other techniques such as transmission electron microscopy, to support full interpretation of the data, the book discusses the extent to which these tools broaden our understanding of the immense diversity of algae and revolutionize ideas of taxonomy and classification. Divided into three parts, the book introduces the very latest ideas on the evolution of algae and the concept of classification and illustrates contrasting viewpoints. The second section addresses systematics and covers virtually all algal groups ranging from microalgae to ultraplankton with individual chapters devoted to each. The final section explores the impact of genomics on algal systematics and concludes with a discussion of future directions for research. As the most up-to-date, authoritative source for classifying algae, this bookprovides unparalleled access to the encyclopedic information revealed by the use of the latest in molecular tools.
Our genome is the blueprint for our existence: it encodes all the information we need to develop from a single cell into a hugely complicated functional organism. Yet it is more than a static information store: our genome is a dynamic, tightly-regulated collection of genes, which switch on and off in many combinations to give the variety of cells from which our bodies are formed. But how do we identify the genes that make up our genome? How do we determine their function? And how do different genes form the regulatory networks that direct the processes of life? Introduction to Genomics is the most up-to-date and complete textbook for students approaching the subject for the first time. Lesk's engaging writing style brings a narrative to a disparate field of study and offers a fascinating insight into what can be revealed from the study of genomes. The book covers: the similarities and differences between organisms; how different organisms evolved; how the genome is constructed and how it operates; and what our understanding of genomics means in terms of our future health and wellbeing. The Online Resource Center accompanying Introduction to Genomics features: For students: *Extensive and imaginative weblems (web-based problems) for each chapter designed to give you practice with the tools required for further study and research in the field *Hints and answers to end-of-chapter problems and exercises support your self-directed learning *Guided tour of websites and major archival databanks in genomics offer a wealth of resources to springboard your own research *Journal club: links to related research articles on topics covered in the book are paired with engaging questions to improve your interpretation of the primary literature *Rotating figures allow you to visualize complex structures For instructors: *Downloadable figures from the book.
Evolutionary Biology – Concepts, Biodiversity, Macroevolution and Genome Evolution by Pierre Pontarotti Pdf
The annual Evolutionary Biology Meetings in Marseilles serve to gather leading scientists, promote the exchange of ideas and encourage the formation of international collaborations. This book contains the most essential contributions presented at the 14th Evolutionary Biology Meeting, which took place in September 2010. It comprises 19 chapters organized according to the following categories: · Evolutionary Biology Concepts · Biodiversity and Evolution · Macroevolution · Genome Evolution Offering an up-to-date overview of recent results in the field of evolutionary biology, this book is an invaluable source of information for scientists, teachers and advanced students.
The Logic of Chance offers a reappraisal and a new synthesis of theories, concepts, and hypotheses on the key aspects of the evolution of life on earth in light of comparative genomics and systems biology. The author presents many specific examples from systems and comparative genomic analysis to begin to build a new, much more detailed, complex, and realistic picture of evolution. The book examines a broad range of topics in evolutionary biology including the inadequacy of natural selection and adaptation as the only or even the main mode of evolution; the key role of horizontal gene transfer in evolution and the consequent overhaul of the Tree of Life concept; the central, underappreciated evolutionary importance of viruses; the origin of eukaryotes as a result of endosymbiosis; the concomitant origin of cells and viruses on the primordial earth; universal dependences between genomic and molecular-phenomic variables; and the evolving landscape of constraints that shape the evolution of genomes and molecular phenomes. "Koonin's account of viral and pre-eukaryotic evolution is undoubtedly up-to-date. His "mega views" of evolution (given what was said above) and his cosmological musings, on the other hand, are interesting reading." Summing Up: Recommended Reprinted with permission from CHOICE, copyright by the American Library Association.
Phylonyms by Kevin de Queiroz,Philip D. Cantino,Jacques A. Gauthier Pdf
Phylonyms is an implementation of PhyloCode, which is a set of principles, rules, and recommendations governing phylogenetic nomenclature. Nearly 300 clades - lineages of organisms - are defined by reference to hypotheses of phylogenetic history rather than by taxonomic ranks and types. This volume will document the Real World uses of PhyloCode and will govern and apply to the names of clades, while species names will still be governed by traditional codes. Key Features Provides clear regulations for implementing new guidelines for naming lineages of organisms incorporates expressly evolutionary and phylogenetic principles Works with existing codes of nomenclature Eliminates the reliance on rank-based classification in favor of phylogenetic relationships Related Titles: Rieppel, O. Phylogenetic Systematics: Haeckel to Hennig (ISBN 978-1-4987-5488-0) Cantino, P. D. and de Queiroz, K. International Code of Phylogenetic Nomenclature (PhyloCode) (ISBN 978-1-138-33282-9).