Performance Optimization Of Numerically Intensive Codes

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Performance Optimization of Numerically Intensive Codes

Author : Stefan Goedecker,Adolfy Hoisie
Publisher : SIAM
Page : 180 pages
File Size : 46,7 Mb
Release : 2001-01-01
Category : Mathematics
ISBN : 9780898714845

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Performance Optimization of Numerically Intensive Codes by Stefan Goedecker,Adolfy Hoisie Pdf

This book offers an introductory and intermediate-level treatment of all the essential ingredients for achieving high performance in numerical computations.

Performance Optimization of Numerically Intensive Codes

Author : Stefan Goedecker,Adolfy Hoisie
Publisher : SIAM
Page : 184 pages
File Size : 52,6 Mb
Release : 2001-01-01
Category : Computer architecture
ISBN : 089871821X

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Performance Optimization of Numerically Intensive Codes by Stefan Goedecker,Adolfy Hoisie Pdf

Performance Optimization of Numerically Intensive Codes offers a comprehensive, tutorial-style, hands-on, introductory and intermediate-level treatment of all the essential ingredients for achieving high performance in numerical computations on modern computers. The authors explain computer architectures, data traffic and issues related to performance of serial and parallel code optimization exemplified by actual programs written for algorithms of wide interest. The unique hands-on style is achieved by extensive case studies using realistic computational problems. The performance gain obtained by applying the techniques described in this book can be very significant. The book bridges the gap between the literature in system architecture, the one in numerical methods and the occasional descriptions of optimization topics in computer vendors' literature. It also allows readers to better judge the suitability of certain computer architecture to their computational requirements. In contrast to standard textbooks on computer architecture and on programming techniques the book treats these topics together at the level necessary for writing high-performance programs. The book facilitates easy access to these topics for computational scientists and engineers mainly interested in practical issues related to efficient code development.

Matrix Algebra

Author : James E. Gentle
Publisher : Springer Science & Business Media
Page : 536 pages
File Size : 41,7 Mb
Release : 2007-08-06
Category : Mathematics
ISBN : 9780387708737

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Matrix Algebra by James E. Gentle Pdf

Matrix algebra is one of the most important areas of mathematics for data analysis and for statistical theory. This much-needed work presents the relevant aspects of the theory of matrix algebra for applications in statistics. It moves on to consider the various types of matrices encountered in statistics, such as projection matrices and positive definite matrices, and describes the special properties of those matrices. Finally, it covers numerical linear algebra, beginning with a discussion of the basics of numerical computations, and following up with accurate and efficient algorithms for factoring matrices, solving linear systems of equations, and extracting eigenvalues and eigenvectors.

Performance Optimization and Tuning Techniques for IBM Power Systems Processors Including IBM POWER8

Author : Brian Hall,Peter Bergner,Alon Shalev Housfater,Madhusudanan Kandasamy,Tulio Magno,Alex Mericas,Steve Munroe,Mauricio Oliveira,Bill Schmidt,Will Schmidt,Bernard King Smith,Julian Wang,Suresh Warrier,David Wendt,IBM Redbooks
Publisher : IBM Redbooks
Page : 274 pages
File Size : 54,5 Mb
Release : 2017-03-31
Category : Computers
ISBN : 9780738440927

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Performance Optimization and Tuning Techniques for IBM Power Systems Processors Including IBM POWER8 by Brian Hall,Peter Bergner,Alon Shalev Housfater,Madhusudanan Kandasamy,Tulio Magno,Alex Mericas,Steve Munroe,Mauricio Oliveira,Bill Schmidt,Will Schmidt,Bernard King Smith,Julian Wang,Suresh Warrier,David Wendt,IBM Redbooks Pdf

This IBM® Redbooks® publication focuses on gathering the correct technical information, and laying out simple guidance for optimizing code performance on IBM POWER8® processor-based systems that run the IBM AIX®, IBM i, or Linux operating systems. There is straightforward performance optimization that can be performed with a minimum of effort and without extensive previous experience or in-depth knowledge. The POWER8 processor contains many new and important performance features, such as support for eight hardware threads in each core and support for transactional memory. The POWER8 processor is a strict superset of the IBM POWER7+TM processor, and so all of the performance features of the POWER7+ processor, such as multiple page sizes, also appear in the POWER8 processor. Much of the technical information and guidance for optimizing performance on POWER8 processors that is presented in this guide also applies to POWER7+ and earlier processors, except where the guide explicitly indicates that a feature is new in the POWER8 processor. This guide strives to focus on optimizations that tend to be positive across a broad set of IBM POWER® processor chips and systems. Specific guidance is given for the POWER8 processor; however, the general guidance is applicable to the IBM POWER7+, IBM POWER7®, IBM POWER6®, IBM POWER5, and even to earlier processors. This guide is directed at personnel who are responsible for performing migration and implementation activities on POWER8 processor-based systems. This includes system administrators, system architects, network administrators, information architects, and database administrators (DBAs).

Numerical Linear Algebra on High-Performance Computers

Author : Jack J. Dongarra,Iain S. Duff,Danny C. Sorensen,Henk A. van der Vorst
Publisher : SIAM
Page : 353 pages
File Size : 42,9 Mb
Release : 1998-01-01
Category : Computers
ISBN : 9780898714289

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Numerical Linear Algebra on High-Performance Computers by Jack J. Dongarra,Iain S. Duff,Danny C. Sorensen,Henk A. van der Vorst Pdf

Provides a rapid introduction to the world of vector and parallel processing for these linear algebra applications.

Computational Science – ICCS 2009

Author : Gabrielle Allen,Jaroslaw Nabrzyski,Edward Seidel,Geert Dick van Albada,Jack Dongarra,Peter M.A. Sloot
Publisher : Springer
Page : 1030 pages
File Size : 48,9 Mb
Release : 2009-05-20
Category : Computers
ISBN : 9783642019708

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Computational Science – ICCS 2009 by Gabrielle Allen,Jaroslaw Nabrzyski,Edward Seidel,Geert Dick van Albada,Jack Dongarra,Peter M.A. Sloot Pdf

“There is something fascinating about science. One gets such wholesale returns of conjecture out of such a tri?ing investment of fact. ” Mark Twain, Life on the Mississippi The challenges in succeeding with computational science are numerous and deeply a?ect all disciplines. NSF’s 2006 Blue Ribbon Panel of Simulation-Based 1 Engineering Science (SBES) states ‘researchers and educators [agree]: com- tational and simulation engineering sciences are fundamental to the security and welfare of the United States. . . We must overcome di?culties inherent in multiscale modeling, the development of next-generation algorithms, and the design. . . of dynamic data-driven application systems. . . We must determine better ways to integrate data-intensive computing, visualization, and simulation. - portantly,wemustoverhauloureducationalsystemtofostertheinterdisciplinary study. . . The payo?sformeeting these challengesareprofound. ’The International Conference on Computational Science 2009 (ICCS 2009) explored how com- tational sciences are not only advancing the traditional hard science disciplines, but also stretching beyond, with applications in the arts, humanities, media and all aspects of research. This interdisciplinary conference drew academic and industry leaders from a variety of ?elds, including physics, astronomy, mat- matics,music,digitalmedia,biologyandengineering. Theconferencealsohosted computer and computational scientists who are designing and building the - ber infrastructure necessary for next-generation computing. Discussions focused on innovative ways to collaborate and how computational science is changing the future of research. ICCS 2009: ‘Compute. Discover. Innovate. ’ was hosted by the Center for Computation and Technology at Louisiana State University in Baton Rouge.

Accelerating MATLAB Performance

Author : Yair M. Altman
Publisher : CRC Press
Page : 790 pages
File Size : 51,7 Mb
Release : 2014-12-11
Category : Computers
ISBN : 9781482211290

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Accelerating MATLAB Performance by Yair M. Altman Pdf

The MATLAB® programming environment is often perceived as a platform suitable for prototyping and modeling but not for "serious" applications. One of the main complaints is that MATLAB is just too slow. Accelerating MATLAB Performance aims to correct this perception by describing multiple ways to greatly improve MATLAB program speed. Packed with thousands of helpful tips, it leaves no stone unturned, discussing every aspect of MATLAB. Ideal for novices and professionals alike, the book describes MATLAB performance in a scale and depth never before published. It takes a comprehensive approach to MATLAB performance, illustrating numerous ways to attain the desired speedup. The book covers MATLAB, CPU, and memory profiling and discusses various tradeoffs in performance tuning. It describes both the application of standard industry techniques in MATLAB, as well as methods that are specific to MATLAB such as using different data types or built-in functions. The book covers MATLAB vectorization, parallelization (implicit and explicit), optimization, memory management, chunking, and caching. It explains MATLAB’s memory model and details how it can be leveraged. It describes the use of GPU, MEX, FPGA, and other forms of compiled code, as well as techniques for speeding up deployed applications. It details specific tips for MATLAB GUI, graphics, and I/O. It also reviews a wide variety of utilities, libraries, and toolboxes that can help to improve performance. Sufficient information is provided to allow readers to immediately apply the suggestions to their own MATLAB programs. Extensive references are also included to allow those who wish to expand the treatment of a particular topic to do so easily. Supported by an active website, and numerous code examples, the book will help readers rapidly attain significant reductions in development costs and program run times.

Performance Analysis and Grid Computing

Author : Vladimir Getov,Michael Gerndt,Adolfy Hoisie,Allen Malony,Barton Miller
Publisher : Springer Science & Business Media
Page : 290 pages
File Size : 54,5 Mb
Release : 2012-12-06
Category : Computers
ISBN : 9781461503613

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Performance Analysis and Grid Computing by Vladimir Getov,Michael Gerndt,Adolfy Hoisie,Allen Malony,Barton Miller Pdf

Past and current research in computer performance analysis has focused primarily on dedicated parallel machines. However, future applications in the area of high-performance computing will not only use individual parallel systems but a large set of networked resources. This scenario of computational and data Grids is attracting a great deal of attention from both computer and computational scientists. In addition to the inherent complexity of parallel machines, the sharing and transparency of the available resources introduces new challenges on performance analysis, techniques, and systems. In order to meet those challenges, a multi-disciplinary approach to the multi-faceted problems of performance is required. New degrees of freedom will come into play with a direct impact on the performance of Grid computing, including wide-area network performance, quality-of-service (QoS), heterogeneity, and middleware systems, to mention only a few.

PETSc for Partial Differential Equations: Numerical Solutions in C and Python

Author : Ed Bueler
Publisher : SIAM
Page : 407 pages
File Size : 45,9 Mb
Release : 2020-10-22
Category : Mathematics
ISBN : 9781611976311

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PETSc for Partial Differential Equations: Numerical Solutions in C and Python by Ed Bueler Pdf

The Portable, Extensible Toolkit for Scientific Computation (PETSc) is an open-source library of advanced data structures and methods for solving linear and nonlinear equations and for managing discretizations. This book uses these modern numerical tools to demonstrate how to solve nonlinear partial differential equations (PDEs) in parallel. It starts from key mathematical concepts, such as Krylov space methods, preconditioning, multigrid, and Newton’s method. In PETSc these components are composed at run time into fast solvers. Discretizations are introduced from the beginning, with an emphasis on finite difference and finite element methodologies. The example C programs of the first 12 chapters, listed on the inside front cover, solve (mostly) elliptic and parabolic PDE problems. Discretization leads to large, sparse, and generally nonlinear systems of algebraic equations. For such problems, mathematical solver concepts are explained and illustrated through the examples, with sufficient context to speed further development. PETSc for Partial Differential Equations addresses both discretizations and fast solvers for PDEs, emphasizing practice more than theory. Well-structured examples lead to run-time choices that result in high solver performance and parallel scalability. The last two chapters build on the reader’s understanding of fast solver concepts when applying the Firedrake Python finite element solver library. This textbook, the first to cover PETSc programming for nonlinear PDEs, provides an on-ramp for graduate students and researchers to a major area of high-performance computing for science and engineering. It is suitable as a supplement for courses in scientific computing or numerical methods for differential equations.

Introduction to High Performance Scientific Computing

Author : David L. Chopp
Publisher : SIAM
Page : 470 pages
File Size : 43,6 Mb
Release : 2019-03-01
Category : Mathematics
ISBN : 9781611975635

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Introduction to High Performance Scientific Computing by David L. Chopp Pdf

Based on a course developed by the author, Introduction to High Performance Scientific Computing introduces methods for adding parallelism to numerical methods for solving differential equations. It contains exercises and programming projects that facilitate learning as well as examples and discussions based on the C programming language, with additional comments for those already familiar with C++. The text provides an overview of concepts and algorithmic techniques for modern scientific computing and is divided into six self-contained parts that can be assembled in any order to create an introductory course using available computer hardware. Part I introduces the C programming language for those not already familiar with programming in a compiled language. Part II describes parallelism on shared memory architectures using OpenMP. Part III details parallelism on computer clusters using MPI for coordinating a computation. Part IV demonstrates the use of graphical programming units (GPUs) to solve problems using the CUDA language for NVIDIA graphics cards. Part V addresses programming on GPUs for non-NVIDIA graphics cards using the OpenCL framework. Finally, Part VI contains a brief discussion of numerical methods and applications, giving the reader an opportunity to test the methods on typical computing problems.

Euro-Par 2003 Parallel Processing

Author : Harald Kosch,László Böszörményi,Hermann Hellwagner
Publisher : Springer
Page : 1324 pages
File Size : 54,7 Mb
Release : 2004-06-01
Category : Computers
ISBN : 9783540452096

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Euro-Par 2003 Parallel Processing by Harald Kosch,László Böszörményi,Hermann Hellwagner Pdf

Euro-ParConferenceSeries The European Conference on Parallel Computing (Euro-Par) is an international conference series dedicated to the promotion and advancement of all aspects of parallel and distributed computing. The major themes fall into the categories of hardware, software, algorithms, and applications. This year, new and interesting topicswereintroduced,likePeer-to-PeerComputing,DistributedMultimedia- stems, and Mobile and Ubiquitous Computing. For the ?rst time, we organized a Demo Session showing many challenging applications. The general objective of Euro-Par is to provide a forum promoting the de- lopment of parallel and distributed computing both as an industrial technique and an academic discipline, extending the frontiers of both the state of the art and the state of the practice. The industrial importance of parallel and dist- buted computing is supported this year by a special Industrial Session as well as a vendors’ exhibition. This is particularly important as currently parallel and distributed computing is evolving into a globally important technology; the b- zword Grid Computing clearly expresses this move. In addition, the trend to a - bile world is clearly visible in this year’s Euro-Par. ThemainaudienceforandparticipantsatEuro-Parareresearchersinaca- mic departments, industrial organizations, and government laboratories. Euro- Par aims to become the primary choice of such professionals for the presentation of new results in their speci?c areas. Euro-Par has its own Internet domain with a permanent Web site where the history of the conference series is described: http://www.euro-par.org. The Euro-Par conference series is sponsored by the Association for Computer Machinery (ACM) and the International Federation for Information Processing (IFIP).

IBM High-Performance Computing Insights with IBM Power System AC922 Clustered Solution

Author : Dino Quintero,Miguel Gomez Gonzalez,Ahmad Y Hussein,Jan-Frode Myklebust,IBM Redbooks
Publisher : IBM Redbooks
Page : 352 pages
File Size : 55,9 Mb
Release : 2019-05-02
Category : Computers
ISBN : 9780738457451

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IBM High-Performance Computing Insights with IBM Power System AC922 Clustered Solution by Dino Quintero,Miguel Gomez Gonzalez,Ahmad Y Hussein,Jan-Frode Myklebust,IBM Redbooks Pdf

This IBM® Redbooks® publication documents and addresses topics to set up a complete infrastructure environment and tune the applications to use an IBM POWER9TM hardware architecture with the technical computing software stack. This publication is driven by a CORAL project solution. It explores, tests, and documents how to implement an IBM High-Performance Computing (HPC) solution on a POWER9 processor-based system by using IBM technical innovations to help solve challenging scientific, technical, and business problems. This book documents the HPC clustering solution with InfiniBand on IBM Power SystemsTM AC922 8335-GTH and 8335-GTX servers with NVIDIA Tesla V100 SXM2 graphics processing units (GPUs) with NVLink, software components, and the IBM SpectrumTM Scale parallel file system. This solution includes recommendations about the components that are used to provide a cohesive clustering environment that includes job scheduling, parallel application tools, scalable file systems, administration tools, and a high-speed interconnect. This book is divided into three parts: Part 1 focuses on the planners of the solution, Part 2 focuses on the administrators, and Part 3 focuses on the developers. This book targets technical professionals (consultants, technical support staff, IT architects, and IT specialists) who are responsible for delivering cost-effective HPC solutions that help uncover insights among clients' data so that they can act to optimize business results, product development, and scientific discoveries.

Exascale Scientific Applications

Author : Tjerk P. Straatsma,Katerina B. Antypas,Timothy J. Williams
Publisher : CRC Press
Page : 1106 pages
File Size : 49,9 Mb
Release : 2017-11-13
Category : Computers
ISBN : 9781351999236

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Exascale Scientific Applications by Tjerk P. Straatsma,Katerina B. Antypas,Timothy J. Williams Pdf

From the Foreword: "The authors of the chapters in this book are the pioneers who will explore the exascale frontier. The path forward will not be easy... These authors, along with their colleagues who will produce these powerful computer systems will, with dedication and determination, overcome the scalability problem, discover the new algorithms needed to achieve exascale performance for the broad range of applications that they represent, and create the new tools needed to support the development of scalable and portable science and engineering applications. Although the focus is on exascale computers, the benefits will permeate all of science and engineering because the technologies developed for the exascale computers of tomorrow will also power the petascale servers and terascale workstations of tomorrow. These affordable computing capabilities will empower scientists and engineers everywhere." — Thom H. Dunning, Jr., Pacific Northwest National Laboratory and University of Washington, Seattle, Washington, USA "This comprehensive summary of applications targeting Exascale at the three DoE labs is a must read." — Rio Yokota, Tokyo Institute of Technology, Tokyo, Japan "Numerical simulation is now a need in many fields of science, technology, and industry. The complexity of the simulated systems coupled with the massive use of data makes HPC essential to move towards predictive simulations. Advances in computer architecture have so far permitted scientific advances, but at the cost of continually adapting algorithms and applications. The next technological breakthroughs force us to rethink the applications by taking energy consumption into account. These profound modifications require not only anticipation and sharing but also a paradigm shift in application design to ensure the sustainability of developments by guaranteeing a certain independence of the applications to the profound modifications of the architectures: it is the passage from optimal performance to the portability of performance. It is the challenge of this book to demonstrate by example the approach that one can adopt for the development of applications offering performance portability in spite of the profound changes of the computing architectures." — Christophe Calvin, CEA, Fundamental Research Division, Saclay, France "Three editors, one from each of the High Performance Computer Centers at Lawrence Berkeley, Argonne, and Oak Ridge National Laboratories, have compiled a very useful set of chapters aimed at describing software developments for the next generation exa-scale computers. Such a book is needed for scientists and engineers to see where the field is going and how they will be able to exploit such architectures for their own work. The book will also benefit students as it provides insights into how to develop software for such computer architectures. Overall, this book fills an important need in showing how to design and implement algorithms for exa-scale architectures which are heterogeneous and have unique memory systems. The book discusses issues with developing user codes for these architectures and how to address these issues including actual coding examples.’ — Dr. David A. Dixon, Robert Ramsay Chair, The University of Alabama, Tuscaloosa, Alabama, USA

Implementing an IBM High-Performance Computing Solution on IBM Power System S822LC

Author : Dino Quintero,Luis Carlos Cruz Huertas,Tsuyoshi Kamenoue,Wainer dos Santos Moschetta,Mauricio Faria de Oliveira,Georgy E Pavlov,Alexander Pozdneev,IBM Redbooks
Publisher : IBM Redbooks
Page : 342 pages
File Size : 54,9 Mb
Release : 2016-07-25
Category : Computers
ISBN : 9780738441870

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Implementing an IBM High-Performance Computing Solution on IBM Power System S822LC by Dino Quintero,Luis Carlos Cruz Huertas,Tsuyoshi Kamenoue,Wainer dos Santos Moschetta,Mauricio Faria de Oliveira,Georgy E Pavlov,Alexander Pozdneev,IBM Redbooks Pdf

This IBM® Redbooks® publication demonstrates and documents that IBM Power SystemsTM high-performance computing and technical computing solutions deliver faster time to value with powerful solutions. Configurable into highly scalable Linux clusters, Power Systems offer extreme performance for demanding workloads such as genomics, finance, computational chemistry, oil and gas exploration, and high-performance data analytics. This book delivers a high-performance computing solution implemented on the IBM Power System S822LC. The solution delivers high application performance and throughput based on its built-for-big-data architecture that incorporates IBM POWER8® processors, tightly coupled Field Programmable Gate Arrays (FPGAs) and accelerators, and faster I/O by using Coherent Accelerator Processor Interface (CAPI). This solution is ideal for clients that need more processing power while simultaneously increasing workload density and reducing datacenter floor space requirements. The Power S822LC offers a modular design to scale from a single rack to hundreds, simplicity of ordering, and a strong innovation roadmap for graphics processing units (GPUs). This publication is targeted toward technical professionals (consultants, technical support staff, IT Architects, and IT Specialists) responsible for delivering cost effective high-performance computing (HPC) solutions that help uncover insights from their data so they can optimize business results, product development, and scientific discoveries

Algorithms for Memory Hierarchies

Author : Ulrich Meyer,Peter Sanders,Jop Sibeyn
Publisher : Springer
Page : 429 pages
File Size : 54,9 Mb
Release : 2003-07-01
Category : Computers
ISBN : 9783540365747

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Algorithms for Memory Hierarchies by Ulrich Meyer,Peter Sanders,Jop Sibeyn Pdf

Algorithms that have to process large data sets have to take into account that the cost of memory access depends on where the data is stored. Traditional algorithm design is based on the von Neumann model where accesses to memory have uniform cost. Actual machines increasingly deviate from this model: while waiting for memory access, nowadays, microprocessors can in principle execute 1000 additions of registers; for hard disk access this factor can reach six orders of magnitude. The 16 coherent chapters in this monograph-like tutorial book introduce and survey algorithmic techniques used to achieve high performance on memory hierarchies; emphasis is placed on methods interesting from a theoretical as well as important from a practical point of view.