Perl Programming For Medicine And Biology

Author : Jules J. Berman
Publisher : Jones & Bartlett Learning
Page : 428 pages
File Size : 46,5 Mb
Release : 2007
Category : Biology
ISBN : 076374333X

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Perl Programming for Medicine and Biology by Jules J. Berman Pdf

Written for biomedical professionals and hospital practitioners interested in creating their own programs, Perl Programming for Medicine and Biology, discusses and reviews biomedical data resources, data standards, data organization, medicolegal and ethical conduct for data miners, and grants-related data sharing responsibilities. It teaches readers the basic Perl programming skills necessary for collecting, analyzing, and distributing biomedical data and provides solutions to in-depth problems that face researchers and healthcare professionals. Non-technical "Background" sections open each chapter to help non-programmers easily comprehend programming procedures. Explanations are provided for the biomedical issues underlying the Perl scripts that follow, and examples of real-world implementation are provided. Perl Programming for Medicine and Biology will show you how to transform, merge, and examine large and complex databases with ease.

Author : Jules J. Berman
Publisher : Unknown
Page : 0 pages
File Size : 52,9 Mb
Release : 2007
Category : Biology
ISBN : OCLC:1412654585

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Perl Programming for Medicine and Biology by Jules J. Berman Pdf

Author : Jules J. Berman
Publisher : Jones & Bartlett Learning
Page : 406 pages
File Size : 52,6 Mb
Release : 2008
Category : Biology
ISBN : 0763750905

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Ruby Programming for Medicine and Biology by Jules J. Berman Pdf

Once again, Jules J. Berman provides biomedical researchers and hospital professionals with an introduction to a time-saving programming language. In this new how-to manual, Berman expertly guides both experienced and inexperienced programmers through the Ruby programming language. Ruby Programming for Medicine and Biology opens with three chapters of Ruby language instruction followed by discussions of 100 ruby scripts covering the most common computational tasks in the field of biomedicine. With helpful explanations of how scripts work, and how they might be implemented in real-world situations, readers will become familiar with this free, open source, object-oriented programming language that is quickly gaining momentum within the bioinformatics community.

Author : Jules J. Berman
Publisher : CRC Press
Page : 413 pages
File Size : 48,5 Mb
Release : 2010-09-22
Category : Mathematics
ISBN : 1439841845

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Methods in Medical Informatics by Jules J. Berman Pdf

Too often, healthcare workers are led to believe that medical informatics is a complex field that can only be mastered by teams of professional programmers. This is simply not the case. With just a few dozen simple algorithms, easily implemented with open source programming languages, you can fully utilize the medical information contained in clini

Author : D. Curtis Jamison
Publisher : John Wiley & Sons
Page : 206 pages
File Size : 40,7 Mb
Release : 2003-07-14
Category : Medical
ISBN : 0471430595

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Perl Programming for Biologists by D. Curtis Jamison Pdf

Working on the assumption that the reader has no formal training in programming, Perl Programming for Biologists demonstrates how Perl is used to solve biological problems. Each chapter opens with a set of learning objectives, provides numerous review questions and self-study exercises, and concludes with a bulleted summary of key points. The author incorporates numerous real-life examples throughout the text. Upon completing the book, readers are able to quickly perform such tasks as correcting recurring errors in spreadsheets, scanning a Fasta sequence for every occurrence of an EcoRI site, adapting other writers' scripts to one's own purposes, and most important, writing reusable and maintainable scripts that spare the rote repetition of code.

Author : Paul D. Lewis
Publisher : Jones & Bartlett Learning
Page : 422 pages
File Size : 45,6 Mb
Release : 2009-05-08
Category : Science
ISBN : 9781449633141

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R for Medicine and Biology by Paul D. Lewis Pdf

R is quickly becoming the number one choice for users in the fields of biology, medicine, and bioinformatics as their main means of storing, processing, sharing, and analyzing biomedical data. R for Medicine and Biology is a step-by-step guide through the use of the statistical environment R, as used in a biomedical domain. Ideal for healthcare professionals, scientists, informaticists, and statistical experts, this resource will provide even the novice programmer with the tools necessary to process and analyze their data using the R environment. Introductory chapters guide readers in how to obtain, install, and become familiar with R and provide a clear introduction to the programming language using numerous worked examples. Later chapters outline how R can be used, not just for biomedical data analysis, but also as an environment for the processing, storing, reporting, and sharing of data and results. The remainder of the book explores areas of R application to common domains of biomedical informatics, including imaging, statistical analysis, data mining/modeling, pathology informatics, epidemiology, clinical trials, and metadata usage. R for Medicine and Biology will provide you with a single desk reference for the R environment and its many capabilities.

Author : James Tisdall
Publisher : "O'Reilly Media, Inc."
Page : 399 pages
File Size : 51,7 Mb
Release : 2003-09-25
Category : Computers
ISBN : 9781449390907

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Mastering Perl for Bioinformatics by James Tisdall Pdf

Historically, programming hasn't been considered a critical skill for biologists. But now, with access to vast amounts of biological data contained in public databases, programming skills are increasingly in strong demand in biology research and development. Perl, with its highly developed capacities in string handling, text processing, networking, and rapid prototyping, has emerged as the programming language of choice for biological data analysis.Mastering Perl for Bioinformatics covers the core Perl language and many of its module extensions, presenting them in the context of biological data and problems of pressing interest to the biological community. This book, along with Beginning Perl for Bioinformatics, forms a basic course in Perl programming. This second volume finishes the basic Perl tutorial material (references, complex data structures, object-oriented programming, use of modules--all presented in a biological context) and presents some advanced topics of considerable interest in bioinformatics.The range of topics covered in Mastering Perl for Bioinformatics prepares the reader for enduring and emerging developments in critical areas of bioinformatics programming such as: Gene finding String alignment Methods of data storage and retrieval (SML and databases) Modeling of networks (graphs and Petri nets) Graphics (Tk) Parallelization Interfacing with other programming languages Statistics (PDL) Protein structure determination Biological models of computation (DNA Computers) Biologists and computer scientists who have conquered the basics of Perl and are ready to move even further in their mastery of this versatile language will appreciate the author's well-balanced approach to applying Perl's analytical abilities to the field of bioinformatics. Full of practical examples and real-world biological problem solving, this book is a must for any reader wanting to move beyond beginner level Perl in bioinformatics.

Author : Jules J. Berman
Publisher : Jones & Bartlett Publishers
Page : 92 pages
File Size : 42,5 Mb
Release : 2008-05-13
Category : Computers
ISBN : 9781449667931

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Perl: The Programming Language by Jules J. Berman Pdf

A perfect companion to Computer Science Illuminated or Concepts in Computing, as well as an excellent primer, Perl: The Programming Language offers a clear introduction to this practical language. Perl has been known to be the all-purpose tool in programming and system administration. This overview describes the fundamentals of this efficient open-source programming system. Beginning programmers will be relieved this dynamic language is not only easy to learn but easy to implement as well.

Author : Jules J. Berman
Publisher : Morgan Kaufmann
Page : 398 pages
File Size : 43,5 Mb
Release : 2016-03-10
Category : Computers
ISBN : 9780128038543

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Data Simplification by Jules J. Berman Pdf

Data Simplification: Taming Information With Open Source Tools addresses the simple fact that modern data is too big and complex to analyze in its native form. Data simplification is the process whereby large and complex data is rendered usable. Complex data must be simplified before it can be analyzed, but the process of data simplification is anything but simple, requiring a specialized set of skills and tools. This book provides data scientists from every scientific discipline with the methods and tools to simplify their data for immediate analysis or long-term storage in a form that can be readily repurposed or integrated with other data. Drawing upon years of practical experience, and using numerous examples and use cases, Jules Berman discusses the principles, methods, and tools that must be studied and mastered to achieve data simplification, open source tools, free utilities and snippets of code that can be reused and repurposed to simplify data, natural language processing and machine translation as a tool to simplify data, and data summarization and visualization and the role they play in making data useful for the end user. Discusses data simplification principles, methods, and tools that must be studied and mastered Provides open source tools, free utilities, and snippets of code that can be reused and repurposed to simplify data Explains how to best utilize indexes to search, retrieve, and analyze textual data Shows the data scientist how to apply ontologies, classifications, classes, properties, and instances to data using tried and true methods

Author : Jules J. Berman
Publisher : Academic Press
Page : 292 pages
File Size : 50,9 Mb
Release : 2020-07-08
Category : Medical
ISBN : 9780128213629

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Logic and Critical Thinking in the Biomedical Sciences by Jules J. Berman Pdf

All too often, individuals engaged in the biomedical sciences assume that numeric data must be left to the proper authorities (e.g., statisticians and data analysts) who are trained to apply sophisticated mathematical algorithms to sets of data. This is a terrible mistake. Individuals with keen observational skills, regardless of their mathematical training, are in the best position to draw correct inferences from their own data and to guide the subsequent implementation of robust, mathematical analyses. Volume 2 of Logic and Critical Thinking in the Biomedical Sciences provides readers with a repertoire of deductive non-mathematical methods that will help them draw useful inferences from their own data.Volumes 1 and 2 of Logic and Critical Thinking in the Biomedical Sciences are written for biomedical scientists and college-level students engaged in any of the life sciences, including bioinformatics and related data sciences. Demonstrates that a great deal can be deduced from quantitative data, without applying any statistical or mathematical analyses Provides readers with simple techniques for quickly reviewing and finding important relationships hidden within large and complex sets of data Using examples drawn from the biomedical literature, discusses common pitfalls in data interpretation and how they can be avoided

Author : Jules J. Berman
Publisher : Academic Press
Page : 446 pages
File Size : 54,9 Mb
Release : 2022-01-25
Category : Computers
ISBN : 9780323972581

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Classification Made Relevant by Jules J. Berman Pdf

Classification Made Relevant: How Scientists Build and Use Classifications and Ontologies explains how classifications and ontologies are designed and used to analyze scientific information. The book presents the fundamentals of classification, leading up to a description of how computer scientists use object-oriented programming languages to model classifications and ontologies. Numerous examples are chosen from the Classification of Life, the Periodic Table of the Elements, and the symmetry relationships contained within the Classification Theorem of Finite Simple Groups. When these three classifications are tied together, they provide a relational hierarchy connecting all of the natural sciences. The book's chapters introduce and describe general concepts that can be understood by any intelligent reader. With each new concept, they follow practical examples selected from various scientific disciplines. In these cases, technical points and specialized vocabulary are linked to glossary items where the item is clarified and expanded. Explains the theory and practice of classification, emphasizing the importance of classifications and ontologies to the modern fields of mathematics, physics, chemistry, biology and medicine Includes numerous real-world examples that demonstrate how bad construction technique can destroy the value of classifications and ontologies Explains how we define and understand the relationships among the classes within a classification and how the properties of a class are inherited by its subclasses Describes ontologies and how they differ from classifications and explains conditions under which ontologies are useful

Author : Jules J. Berman
Publisher : Elsevier
Page : 176 pages
File Size : 41,9 Mb
Release : 2015-03-13
Category : Computers
ISBN : 9780128029152

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Repurposing Legacy Data by Jules J. Berman Pdf

Repurposing Legacy Data: Innovative Case Studies takes a look at how data scientists have re-purposed legacy data, whether their own, or legacy data that has been donated to the public domain. Most of the data stored worldwide is legacy data—data created some time in the past, for a particular purpose, and left in obsolete formats. As with keepsakes in an attic, we retain this information thinking it may have value in the future, though we have no current use for it. The case studies in this book, from such diverse fields as cosmology, quantum physics, high-energy physics, microbiology, psychiatry, medicine, and hospital administration, all serve to demonstrate how innovative people draw value from legacy data. By following the case examples, readers will learn how legacy data is restored, merged, and analyzed for purposes that were never imagined by the original data creators. Discusses how combining existing data with other data sets of the same kind can produce an aggregate data set that serves to answer questions that could not be answered with any of the original data Presents a method for re-analyzing original data sets using alternate or improved methods that can provide outcomes more precise and reliable than those produced in the original analysis Explains how to integrate heterogeneous data sets for the purpose of answering questions or developing concepts that span several different scientific fields

Author : Jules J Berman
Publisher : Academic Press
Page : 480 pages
File Size : 54,9 Mb
Release : 2018-07-23
Category : Computers
ISBN : 9780128156100

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Principles and Practice of Big Data by Jules J Berman Pdf

Principles and Practice of Big Data: Preparing, Sharing, and Analyzing Complex Information, Second Edition updates and expands on the first edition, bringing a set of techniques and algorithms that are tailored to Big Data projects. The book stresses the point that most data analyses conducted on large, complex data sets can be achieved without the use of specialized suites of software (e.g., Hadoop), and without expensive hardware (e.g., supercomputers). The core of every algorithm described in the book can be implemented in a few lines of code using just about any popular programming language (Python snippets are provided). Through the use of new multiple examples, this edition demonstrates that if we understand our data, and if we know how to ask the right questions, we can learn a great deal from large and complex data collections. The book will assist students and professionals from all scientific backgrounds who are interested in stepping outside the traditional boundaries of their chosen academic disciplines. Presents new methodologies that are widely applicable to just about any project involving large and complex datasets Offers readers informative new case studies across a range scientific and engineering disciplines Provides insights into semantics, identification, de-identification, vulnerabilities and regulatory/legal issues Utilizes a combination of pseudocode and very short snippets of Python code to show readers how they may develop their own projects without downloading or learning new software

Author : Jeffrey C Pommerville
Publisher : Jones & Bartlett Publishers
Page : 916 pages
File Size : 53,6 Mb
Release : 2010-03-08
Category : Electronic
ISBN : 9781449615666

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Alcamo's Fundamentals of Microbiology by Jeffrey C Pommerville Pdf

The ninth edition of award-winning author Jeffrey Pommerville's classic text provides nursing and allied health students with a firm foundation in microbiology, with an emphasis on human disease. An educator himself, Dr. Pommerville incorporates accessible, engaging pedagogical elements and student-friendly ancillaries to help students maximize their understanding and retention of key concepts. Ideal for the non-major, the ninth edition includes numerous updates and additions, including the latest disease data and statistics, new material on emerging disease outbreaks, an expanded use of concept maps, and may other pedagogical features. With an inviting "Learning Design" format and Study Smart notes to students, Alcamo's Fundamentals of Microbiology, Ninth Edition ensures student success as they delve into the exciting world of microbiology.

Author : Jeffrey C. Pommerville
Publisher : Jones & Bartlett Publishers
Page : 916 pages
File Size : 53,5 Mb
Release : 2010-08-10
Category : Science
ISBN : 9781449655822

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Alcamo's Fundamentals of Microbiology by Jeffrey C. Pommerville Pdf

The ninth edition of award-winning author Jeffrey Pommerville's classic text provides nursing and allied health students with a firm foundation in microbiology, with an emphasis on human disease. An educator himself, Dr. Pommerville incorporates accessible, engaging pedagogical elements and student-friendly ancillaries to help students maximize their understanding and retention of key concepts. Ideal for the non-major, the ninth edition includes numerous updates and additions, including the latest disease data and statistics, new material on emerging disease outbreaks, an expanded use of concept maps, and may other pedagogical features. With an inviting "Learning Design" format and Study Smart notes to students, Alcamo's Fundamentals of Microbiology, Ninth Edition ensures student success as they delve into the exciting world of microbiology.