Plant Genomes Methods For Genetic And Physical Mapping

Author : J.S. Beckmann,T.C. Osborn
Publisher : Springer Science & Business Media
Page : 233 pages
File Size : 41,7 Mb
Release : 2012-12-06
Category : Science
ISBN : 9789401124423

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Plant Genomes: Methods for Genetic and Physical Mapping by J.S. Beckmann,T.C. Osborn Pdf

JACQUES S. BECKMANN & THOMAS C. OSBORN Extraordinary progress has been made in the analyses of the genetic structures of higher eukaryotic genomes. Only ten years elapsed between the initial proposals to use molecular DNA markers for the generation of a complete linkage map of the human genome [5, 17] and the first description of a 10 centimorgan map of one of its chromosomes [22], soon to be followed by others. The availability of molecular DNA markers, henceforth called genomic markers [for a review of their properties see 1, 2, 20], represents a milestone in genetics by providing the capacity for complete genetic coverage of all genomes. It is important to remember that the nature of the DNA polymorphism or of the specific method used to uncover it can be quite different for different marker loci. The genetic variation detected can be a result of a simple point mutation, a DNA insertion/deletion event, or a change in repeat copy number at some hypervariable DNA [11] or micro satellite [21] motif. Currently, the methods of detection can involve use of restriction endonucleases, nucleic acid hybridization, or DNA sequence amplification. Each of these sources of var iation and methods of detection can have utility for different applications. Furthermore, new approaches for the detection of DNA polymorphism are constantly emerging. The primary concern here is that the monitored poly morphism defines a genetic marker 'useful' for the desired application.

Author : Khalid Meksem,Guenter Kahl
Publisher : John Wiley & Sons
Page : 402 pages
File Size : 49,9 Mb
Release : 2006-03-06
Category : Science
ISBN : 9783527604432

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The Handbook of Plant Genome Mapping by Khalid Meksem,Guenter Kahl Pdf

While the complete sequencing of the genomes of model organisms such as a multitude of bacteria and archaea, the yeast Saccharomyces cerevisiae, the worm Caenorhabditis elegans, the fly Drosophila melanogaster, and the mouse and human genomes have received much public attention, the deciphering of plant genomeswas greatly lagging behind. Up to now, only two plant genomes, one of the model plant Arabidopsis thaliana and one of the crop species rice (Oryza sativa) have been sequenced, though a series of other crop genome sequencing projects are underway. Notwithstanding this public bias towards genomics of animals and humans, it is nevertheless of great importance for basic and applied sciences and industries in such diverse fields as agriculture, breeding in particular, evolutionary genetics, biotechnology, and food science to know the composition of crop plant genomes in detail. It is equally crucial for a deeper understanding of the molecular basis of biodiversity and synteny. The Handbook of Genome Mapping: Genetic and Physical Mapping is the first book on the market to cover these hot topics in considerable detail, and is set apart by its combination of genetic and physical mapping. Throughout, each chapter begins with an easy-to-read introduction, also making the book the first reference designed for non-specialists and newcomers, too. In addition to being an outstanding bench work reference, the book is an excellent textbook for learning and teaching genomics, in particular for courses on genome mapping. It also serves as an up-to-date guide for seasoned researchers involved in the genetic and physical mapping of genomes, especially plant genomes.

Author : Lawrence B. Schook
Publisher : CRC Press
Page : 353 pages
File Size : 49,8 Mb
Release : 2020-07-24
Category : Science
ISBN : 9781000104639

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Gene-Mapping Techniques and Applications by Lawrence B. Schook Pdf

This book explains current strategies for mapping genomes of higher organisms and explores applications of gene mapping to agriculturally important species of plants and animals. It also explores the experimental techniques used for genetic and physical mapping of genes.

Author : Andrew H. Paterson
Publisher : Unknown
Page : 360 pages
File Size : 54,9 Mb
Release : 1996
Category : Nature
ISBN : STANFORD:36105018366760

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Genome Mapping in Plants by Andrew H. Paterson Pdf

Author : C Kole,A.G. Abbott
Publisher : CRC Press
Page : 432 pages
File Size : 43,5 Mb
Release : 2008-01-03
Category : Science
ISBN : STANFORD:36105130557304

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Principles and Practices of Plant Genomics, Vol. 1 by C Kole,A.G. Abbott Pdf

"The three volumes in this series ... containing 41 chapters contributed by over [one] hundred globally reputed scientists, provide lucid deliberations on the concepts, strategies, tools, methodologies and achievements of plant genomics presented in a typical class-room approach."--Back cover.

Author : Nnadozie C. Oraguzie,Erik H.A. Rikkerink,Susan E. Gardiner,H. Nihal de Silva
Publisher : Springer Science & Business Media
Page : 290 pages
File Size : 51,5 Mb
Release : 2007-01-06
Category : Science
ISBN : 9780387360119

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Association Mapping in Plants by Nnadozie C. Oraguzie,Erik H.A. Rikkerink,Susan E. Gardiner,H. Nihal de Silva Pdf

This book provides both basic and advanced understanding of association mapping and an awareness of population genomics tools to facilitate mapping and identification of the underlying causes of quantitative trait variation in plants. It acts as a useful review of the marker technology, the statistical methodology, and the progress to date. It also offers guides to the use of single nucleotide polymorphisms (SNPs) in association studies.

Author : Chittaranjan Kole,Albert G. Abbott
Publisher : CRC Press
Page : 628 pages
File Size : 43,7 Mb
Release : 2016-04-19
Category : Science
ISBN : 9781439845523

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Principles and Practices of Plant Genomics, Volume 3 by Chittaranjan Kole,Albert G. Abbott Pdf

This book presents the basic and applied aspects of sequencing of genes and genomes and their implication in the fine-scale elucidation of the plant genomes. The third volume presents an overview on the advances of plant genomics made in the past century; deliberations on the genomics resources; concepts, tools, strategies, and achievements of

Author : USDA Plant Genome Research Program
Publisher : Unknown
Page : 20 pages
File Size : 54,8 Mb
Release : 1991
Category : Plant genome mapping
ISBN : UIUC:30112046921430

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USDA Plant Genome Research Program by USDA Plant Genome Research Program Pdf

Author : Hank Bass,James A. Birchler
Publisher : Springer Science & Business Media
Page : 346 pages
File Size : 40,7 Mb
Release : 2011-12-02
Category : Science
ISBN : 9780387708690

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Plant Cytogenetics by Hank Bass,James A. Birchler Pdf

This reference book provides information on plant cytogenetics for students, instructors, and researchers. Topics covered by international experts include classical cytogenetics of plant genomes; plant chromosome structure; functional, molecular cytology; and genome dynamics. In addition, chapters are included on several methods in plant cytogenetics, informatics, and even laboratory exercises for aspiring or practiced instructors. The book provides a unique combination of historical and modern subject matter, revealing the central role of plant cytogenetics in plant genetics and genomics as currently practiced. This breadth of coverage, together with the inclusion of methods and instruction, is intended to convey a deep and useful appreciation for plant cytogenetics. We hope it will inform and inspire students, researchers, and teachers to continue to employ plant cytogenetics to address fundamental questions about the cytology of plant chromosomes and genomes for years to come. Hank W. Bass is a Professor in the Department of Biological Science at Florida State University. James A. Birchler is a Professor in the Division of Biological Sciences at the University of Missouri.

Author : Erich Grotewold
Publisher : Springer Science & Business Media
Page : 443 pages
File Size : 43,7 Mb
Release : 2008-02-03
Category : Science
ISBN : 9781592594139

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Plant Functional Genomics by Erich Grotewold Pdf

Functional genomics is a young discipline whose origin can be traced back to the late 1980s and early 1990s, when molecular tools became available to determine the cellular functions of genes. Today, functional genomics is p- ceived as the analysis, often large-scale, that bridges the structure and organi- tion of genomes and the assessment of gene function. The completion in 2000 of the genome sequence of Arabidopsis thaliana has created a number of new and exciting challenges in plant functional genomics. The immediate task for the plant biology community is to establish the functions of the approximately 25,000 genes present in this model plant. One major issue that will remain even after this formidable task is c- pleted is establishing to what degree our understanding of the genome of one model organism, such as the dicot Arabidopsis, provides insight into the or- nization and function of genes in other plants. The genome sequence of rice, completed in 2002 as a result of the synergistic interaction of the private and public sectors, promises to significantly enrich our knowledge of the general organization of plant genomes. However, the tools available to investigate gene function in rice are lagging behind those offered by other model plant systems. Approaches available to investigate gene function become even more limited for plants other than the model systems of Arabidopsis, rice, and maize.

Author : C Kole,A.G. Abbott
Publisher : CRC Press
Page : 415 pages
File Size : 45,5 Mb
Release : 2008-01-03
Category : Science
ISBN : 157808525X

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Principles and Practices of Plant Genomics, Vol. 1 by C Kole,A.G. Abbott Pdf

Genome of an organism is depicted by genetic linkage mapping and physical mapping. Genome mapping stated with genetic linkage mapping and contributed enormously in genome analysis and its improvement. Physical mapping emerged later and is the prelude to structural and functional genomics. This volume briefly introduces the historical background and overview on genome mapping. Chapters deliberating on different types of molecular markers, their detection, relative merits, shortcomings and applications; types of mapping populations, methods of their generation, applications; basic concepts and schematic depiction of construction of genetic linkage maps; concepts and strategies of mapping genes controlling qualitative and quantitative traits on framework genetic linkage maps; rationale, methodologies and implications of comparative mapping; principles, strategies, and outcome of map-based cloning; overviews on the recent advances on plant genomics and genome initiatives; and finally computer strategies and softw

Author : National Research Council,Division on Earth and Life Studies,Commission on Life Sciences,Committee on Mapping and Sequencing the Human Genome
Publisher : National Academies Press
Page : 128 pages
File Size : 46,9 Mb
Release : 1988-01-01
Category : Science
ISBN : 9780309038409

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Mapping and Sequencing the Human Genome by National Research Council,Division on Earth and Life Studies,Commission on Life Sciences,Committee on Mapping and Sequencing the Human Genome Pdf

There is growing enthusiasm in the scientific community about the prospect of mapping and sequencing the human genome, a monumental project that will have far-reaching consequences for medicine, biology, technology, and other fields. But how will such an effort be organized and funded? How will we develop the new technologies that are needed? What new legal, social, and ethical questions will be raised? Mapping and Sequencing the Human Genome is a blueprint for this proposed project. The authors offer a highly readable explanation of the technical aspects of genetic mapping and sequencing, and they recommend specific interim and long-range research goals, organizational strategies, and funding levels. They also outline some of the legal and social questions that might arise and urge their early consideration by policymakers.

Author : J F Morot-Gaudry
Publisher : CRC Press
Page : 739 pages
File Size : 54,9 Mb
Release : 2013-11-13
Category : Science
ISBN : 9781000610963

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Functional Plant Genomics by J F Morot-Gaudry Pdf

The openings offered by functional genomics reconciles organism biology and molecular biology, in order to define an integrative biology that should allow new insights about how a phenotype is built up from a genotype in interaction with its environment. This book covers a wide area of concepts and methods in genomics. This range from international

Author : R.L. Phillips,Indra K. Vasil
Publisher : Springer Science & Business Media
Page : 508 pages
File Size : 43,7 Mb
Release : 2013-03-14
Category : Science
ISBN : 9789401598156

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DNA-Based Markers in Plants by R.L. Phillips,Indra K. Vasil Pdf

With the new techniques described in this volume, a new gene can be placed on the linkage map within only a few days. Leading researchers have updated the earlier edition to include the latest versions of DNA-based marker maps for a variety of important crops.

Author : Christopher A. Cullis
Publisher : John Wiley & Sons
Page : 230 pages
File Size : 50,7 Mb
Release : 2004-01-20
Category : Science
ISBN : 9780471488583

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Plant Genomics and Proteomics by Christopher A. Cullis Pdf

Plant research has stood at the forefront of the genomics revolution. One of the first genome projects, the sequencing of the commonly used model organism Arabidopsis, has already yielded important results for the study of a broad array of crops such as corn and soybeans. With crop and food bioengineering only in its infancy, the need to understand the fundamental genetic mechanisms of plants will only become more pressing. A comprehensive guide to this fascinating area of genomics, Plant Genomics and Proteomics presents an integrated, broadly accessible treatment of the complex relationship between the genome, transcriptome, and proteome of plants. This clearly written text introduces the reader to the range of molecular techniques applicable to investigating the unique facets of plant growth, development, and response to the environment. Coverage includes: Functional and structural genomics addressed within the context of current techniques and challenges to come How to utilize DNA and protein sequence data Practical considerations for choosing and employing the most commonly available computer applications A review of applications for biotechnology, including genetic modification and defense against pathogens Bioinformatics tools and Web resources Numerous examples from the latest research throughout Assuming no specialized knowledge of plant biology on the part of its reader, Plant Genomics and Proteomics provides an invaluable resource for students and researchers in biotechnology, plant biology, genomics, and bioinformatics.