Plant Genomics

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From Plant Genomics to Plant Biotechnology

Palmiro Poltronieri,Natalija Burbulis,Corrado Fogher
From Plant Genomics to Plant Biotechnology Book PDF

Author : Palmiro Poltronieri,Natalija Burbulis,Corrado Fogher
Publisher : Elsevier
Page : 274 pages
File Size : 45,5 Mb
Release : 2013-08-31
Category : Science
ISBN : 9781908818478

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From Plant Genomics to Plant Biotechnology by Palmiro Poltronieri,Natalija Burbulis,Corrado Fogher Pdf

With the appearance of methods for the sequencing of genomes and less expensive next generation sequencing methods, we face rapid advancements of the -omics technologies and plant biology studies: reverse and forward genetics, functional genomics, transcriptomics, proteomics, metabolomics, the movement at distance of effectors and structural biology. From plant genomics to plant biotechnology reviews the recent advancements in the post-genomic era, discussing how different varieties respond to abiotic and biotic stresses, understanding the epigenetic control and epigenetic memory, the roles of non-coding RNAs, applicative uses of RNA silencing and RNA interference in plant physiology and in experimental transgenics and plants modified to specific aims. In the forthcoming years these advancements will support the production of plant varieties better suited to resist biotic and abiotic stresses, for food and non-food applications. This book covers these issues, showing how such technologies are influencing the plant field in sectors such as the selection of plant varieties and plant breeding, selection of optimum agronomic traits, stress-resistant varieties, improvement of plant fitness, improving crop yield, and non-food applications in the knowledge based bio-economy. Discusses a broad range of applications: the examples originate from a variety of sectors (including in field studies, breeding, RNA regulation, pharmaceuticals and biotech) and a variety of scientific areas (such as bioinformatics, -omics sciences, epigenetics, and the agro-industry) Provides a unique perspective on work normally performed 'behind closed doors'. As such, it presents an opportunity for those within the field to learn from each other, and for those on the 'outside' to see how different groups have approached key problems Highlights the criteria used to compare and assess different approaches to solving problems. Shows the thinking process, practical limitations and any other considerations, aiding in the understanding of a deeper approach

Plant Genes, Genomes and Genetics

Erich Grotewold,Joseph Chappell,Elizabeth A. Kellogg
Plant Genes Genomes and Genetics Book PDF

Author : Erich Grotewold,Joseph Chappell,Elizabeth A. Kellogg
Publisher : John Wiley & Sons
Page : 261 pages
File Size : 44,5 Mb
Release : 2015-06-02
Category : Science
ISBN : 9781119998884

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Plant Genes, Genomes and Genetics by Erich Grotewold,Joseph Chappell,Elizabeth A. Kellogg Pdf

Plant Genes, Genomes and Genetics provides a comprehensive treatment of all aspects of plant gene expression. Unique in explaining the subject from a plant perspective, it highlights the importance of key processes, many first discovered in plants, that impact how plants develop and interact with the environment. This text covers topics ranging from plant genome structure and the key control points in how genes are expressed, to the mechanisms by which proteins are generated and how their activities are controlled and altered by posttranslational modifications. Written by a highly respected team of specialists in plant biology with extensive experience in teaching at undergraduate and graduate level, this textbook will be invaluable for students and instructors alike. Plant Genes, Genomes and Genetics also includes: specific examples that highlight when and how plants operate differently from other organisms special sections that provide in-depth discussions of particular issues end-of-chapter problems to help students recapitulate the main concepts rich, full-colour illustrations and diagrams clearly showing important processes in plant gene expression a companion website with PowerPoint slides, downloadable figures, and answers to the questions posed in the book Aimed at upper level undergraduates and graduate students in plant biology, this text is equally suited for advanced agronomy and crop science students inclined to understand molecular aspects of organismal phenomena. It is also an invaluable starting point for professionals entering the field of plant biology.

Plant Genomics and Proteomics

Christopher A. Cullis
Plant Genomics and Proteomics Book PDF

Author : Christopher A. Cullis
Publisher : John Wiley & Sons
Page : 230 pages
File Size : 53,6 Mb
Release : 2004-01-20
Category : Science
ISBN : 9780471488583

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Plant Genomics and Proteomics by Christopher A. Cullis Pdf

Plant research has stood at the forefront of the genomics revolution. One of the first genome projects, the sequencing of the commonly used model organism Arabidopsis, has already yielded important results for the study of a broad array of crops such as corn and soybeans. With crop and food bioengineering only in its infancy, the need to understand the fundamental genetic mechanisms of plants will only become more pressing. A comprehensive guide to this fascinating area of genomics, Plant Genomics and Proteomics presents an integrated, broadly accessible treatment of the complex relationship between the genome, transcriptome, and proteome of plants. This clearly written text introduces the reader to the range of molecular techniques applicable to investigating the unique facets of plant growth, development, and response to the environment. Coverage includes: Functional and structural genomics addressed within the context of current techniques and challenges to come How to utilize DNA and protein sequence data Practical considerations for choosing and employing the most commonly available computer applications A review of applications for biotechnology, including genetic modification and defense against pathogens Bioinformatics tools and Web resources Numerous examples from the latest research throughout Assuming no specialized knowledge of plant biology on the part of its reader, Plant Genomics and Proteomics provides an invaluable resource for students and researchers in biotechnology, plant biology, genomics, and bioinformatics.

Plant Genomics

Daryl J. Somers,Peter Langridge,J.P. Gustafson
Plant Genomics Book PDF

Author : Daryl J. Somers,Peter Langridge,J.P. Gustafson
Publisher : Humana Press
Page : 0 pages
File Size : 53,8 Mb
Release : 2011-01-20
Category : Science
ISBN : 1617378739

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Plant Genomics by Daryl J. Somers,Peter Langridge,J.P. Gustafson Pdf

Plant genomics is a growing and constantly evolving field of study, one which has gained much ground in past years through the development of advanced research and data management tools. In Plant Genomics: Methods and Protocols, expert researchers explore the current issues and methodologies of this expanding field, specifically addressing areas of gene discovery and the functional analysis of genes with a focus on the primary tools and sub-disciplines of genetic mapping, mRNA, protein and metabolite profiling. Chapters employ exciting new methods to investigate molecular plant breeding technology and gene functional analysis via transformation, mutation, protein function, and gene expression. Composed in the highly successful Methods in Molecular Biology series format, each chapter contains a brief introduction, step-by-step methods, a list of necessary materials, and a Notes section which shares tips on troubleshooting and avoiding known pitfalls. Comprehensive and innovative, Plant Genomics: Methods and Protocols is an essential guide for all plant scientists who are interested in further studies in the area of genomics research.

Plant Genomes

Jean-Nicolas Volff
Plant Genomes Book PDF

Author : Jean-Nicolas Volff
Publisher : Karger Medical and Scientific Publishers
Page : 155 pages
File Size : 46,8 Mb
Release : 2008-01-01
Category : Medical
ISBN : 9783805584913

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Plant Genomes by Jean-Nicolas Volff Pdf

Recent major advances in the field of comparative genomics and cytogenomics of plants, particularly associated with the completion of ambitious genome projects, have uncovered astonishing facets of the architecture and evolutionary history of plant genomes. The aim of this book was to review these recent developments as well as their implications in our understanding of the mechanisms which drive plant diversity. New insights into the evolution of gene functions, gene families and genome size are presented, with particular emphasis on the evolutionary impact of polyploidization and transposable elements. Knowledge on the structure and evolution of plant sex chromosomes, centromeres and microRNAs is reviewed and updated. Taken together, the contributions by internationally recognized experts present a panoramic overview of the structural features and evolutionary dynamics of plant genomes.This volume of Genome Dynamics will provide researchers, teachers and students in the fields of biology and agronomy with a valuable source of current knowledge on plant genomes.

Plant Genomics and Climate Change

David Edwards,Jacqueline Batley
Plant Genomics and Climate Change Book PDF

Author : David Edwards,Jacqueline Batley
Publisher : Springer
Page : 0 pages
File Size : 49,7 Mb
Release : 2018-04-19
Category : Science
ISBN : 149398070X

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Plant Genomics and Climate Change by David Edwards,Jacqueline Batley Pdf

This book explores the impact of climate change on agriculture and our future ability to produce the crops which are the foundation of the human diet. Specifically, individual chapters explore the potential for genomics assisted breeding of improved crops with greater yield and tolerance to the stresses associated with predicted climate change scenarios. Given the clear and unmet challenge to mitigate climate changing events, this book will be of wide interest from plant breeders and environmental scientists, government bodies through to a more general audience who are interested in the likely impact of climate change on agriculture.

Plant Functional Genomics

Erich Grotewold
Plant Functional Genomics Book PDF

Author : Erich Grotewold
Publisher : Springer Science & Business Media
Page : 443 pages
File Size : 55,5 Mb
Release : 2008-02-03
Category : Science
ISBN : 9781592594139

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Plant Functional Genomics by Erich Grotewold Pdf

Functional genomics is a young discipline whose origin can be traced back to the late 1980s and early 1990s, when molecular tools became available to determine the cellular functions of genes. Today, functional genomics is p- ceived as the analysis, often large-scale, that bridges the structure and organi- tion of genomes and the assessment of gene function. The completion in 2000 of the genome sequence of Arabidopsis thaliana has created a number of new and exciting challenges in plant functional genomics. The immediate task for the plant biology community is to establish the functions of the approximately 25,000 genes present in this model plant. One major issue that will remain even after this formidable task is c- pleted is establishing to what degree our understanding of the genome of one model organism, such as the dicot Arabidopsis, provides insight into the or- nization and function of genes in other plants. The genome sequence of rice, completed in 2002 as a result of the synergistic interaction of the private and public sectors, promises to significantly enrich our knowledge of the general organization of plant genomes. However, the tools available to investigate gene function in rice are lagging behind those offered by other model plant systems. Approaches available to investigate gene function become even more limited for plants other than the model systems of Arabidopsis, rice, and maize.

Plant Genomics Databases

Aalt D. J. van Dijk
Plant Genomics Databases Book PDF

Author : Aalt D. J. van Dijk
Publisher : Unknown
Page : 336 pages
File Size : 44,9 Mb
Release : 2017
Category : Botany
ISBN : 1493966588

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Plant Genomics Databases by Aalt D. J. van Dijk Pdf

This volume introduces databases containing the results from the recent revolution in sequencing technologies. Chapters in Plant Genomics Databases: Methods and Protocols describe database content, as well as typical use-cases. Some chapters explore databases that primarily present genome sequences focusing on one or a few related species, while others include additional datatypes and/or data from various plant species. Written in the highly successful Methods in Molecular Biology series format, chapters include introductions to their respective topics, step-by-step, readily reproducible protocols, and tips on troubleshooting and avoiding known pitfalls. Cutting-edge and comprehensive, Plant Genomics Databases: Methods and Protocols is a valuable resource for providing clear guidance in accessing an important collection of plant databases that can be used to add biological value to genomic data.

Applied Plant Genomics and Biotechnology

Palmiro Poltronieri,Yiguo Hong
Applied Plant Genomics and Biotechnology Book PDF

Author : Palmiro Poltronieri,Yiguo Hong
Publisher : Woodhead Publishing
Page : 356 pages
File Size : 46,5 Mb
Release : 2015-01-27
Category : Science
ISBN : 9780081000717

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Applied Plant Genomics and Biotechnology by Palmiro Poltronieri,Yiguo Hong Pdf

Applied plant genomics and biotechnology reviews the recent advancements in the post-genomic era, discussing how different varieties respond to abiotic and biotic stresses, investigating epigenetic modifications and epigenetic memory through analysis of DNA methylation states, applicative uses of RNA silencing and RNA interference in plant physiology and in experimental transgenics, and plants modified to produce high-value pharmaceutical proteins. The book provides an overview of research advances in application of RNA silencing and RNA interference, through Virus-based transient gene expression systems, Virus induced gene complementation (VIGC), Virus induced gene silencing (Sir VIGS, Mr VIGS) Virus-based microRNA silencing (VbMS) and Virus-based RNA mobility assays (VRMA); RNA based vaccines and expression of virus proteins or RNA, and virus-like particles in plants, the potential of virus vaccines and therapeutics, and exploring plants as factories for useful products and pharmaceuticals are topics wholly deepened. The book reviews and discuss Plant Functional Genomic studies discussing the technologies supporting the genetic improvement of plants and the production of plant varieties more resistant to biotic and abiotic stresses. Several important crops are analysed providing a glimpse on the most up-to-date methods and topics of investigation. The book presents a review on current state of GMO, the cisgenesis-derived plants and novel plant products devoid of transgene elements, discuss their regulation and the production of desired traits such as resistance to viruses and disease also in fruit trees and wood trees with long vegetative periods. Several chapters cover aspects of plant physiology related to plant improvement: cytokinin metabolism and hormone signaling pathways are discussed in barley; PARP-domain proteins involved in Stress-Induced Morphogenetic Response, regulation of NAD signaling and ROS dependent synthesis of anthocyanins. Apple allergen isoforms and the various content in different varieties are discussed and approaches to reduce their presence. Euphorbiaceae, castor bean, cassava and Jathropa are discussed at genomic structure, their diseases and viruses, and methods of transformation. Rice genomics and agricultural traits are discussed, and biotechnology for engineering and improve rice varieties. Mango topics are presented with an overview of molecular methods for variety differentiation, and aspects of fruit improvement by traditional and biotechnology methods. Oilseed rape is presented, discussing the genetic diversity, quality traits, genetic maps, genomic selection and comparative genomics for improvement of varieties. Tomato studies are presented, with an overview on the knowledge of the regulatory networks involved in flowering, methods applied to study the tomato genome-wide DNA methylation, its regulation by small RNAs, microRNA-dependent control of transcription factors expression, the development and ripening processes in tomato, genomic studies and fruit modelling to establish fleshy fruit traits of interest; the gene reprogramming during fruit ripening, and the ethylene dependent and independent DNA methylation changes. provides an overview on the ongoing projects and activities in the field of applied biotechnology includes examples of different crops and applications to be exploited reviews and discusses Plant Functional Genomic studies and the future developments in the field explores the new technologies supporting the genetic improvement of plants

Genomics of Plant Genetic Resources

Roberto Tuberosa,Andreas Graner,Emile Frison
Genomics of Plant Genetic Resources Book PDF

Author : Roberto Tuberosa,Andreas Graner,Emile Frison
Publisher : Springer Science & Business Media
Page : 710 pages
File Size : 41,5 Mb
Release : 2013-11-08
Category : Science
ISBN : 9789400775725

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Genomics of Plant Genetic Resources by Roberto Tuberosa,Andreas Graner,Emile Frison Pdf

Our lives and well being intimately depend on the exploitation of the plant genetic resources available to our breeding programs. Therefore, more extensive exploration and effective exploitation of plant genetic resources are essential prerequisites for the release of improved cultivars. Accordingly, the remarkable progress in genomics approaches and more recently in sequencing and bioinformatics offers unprecedented opportunities for mining germplasm collections, mapping and cloning loci of interest, identifying novel alleles and deploying them for breeding purposes. This book collects 48 highly interdisciplinary articles describing how genomics improves our capacity to characterize and harness natural and artificially induced variation in order to boost crop productivity and provide consumers with high-quality food. This book will be an invaluable reference for all those interested in managing, mining and harnessing the genetic richness of plant genetic resources.

Principles and Practices of Plant Genomics, Volume 3

Chittaranjan Kole,Albert G. Abbott
Principles and Practices of Plant Genomics Volume 3 Book PDF

Author : Chittaranjan Kole,Albert G. Abbott
Publisher : CRC Press
Page : 370 pages
File Size : 41,8 Mb
Release : 2016-04-19
Category : Science
ISBN : 9781439845523

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Principles and Practices of Plant Genomics, Volume 3 by Chittaranjan Kole,Albert G. Abbott Pdf

This book presents the basic and applied aspects of sequencing of genes and genomes and their implication in the fine-scale elucidation of the plant genomes. The third volume presents an overview on the advances of plant genomics made in the past century; deliberations on the genomics resources; concepts, tools, strategies, and achievements of comparative, evolutionary, and functional genomics and whole-genome sequencing. It also presents critical reviews on the already completed genome initiatives and glimpses on the currently progressing genome initiatives. This volume is an ideal reference book for students, scholars and scientists in academia, industry, and government.

Genomics of Tropical Crop Plants

Paul H. Moore,Ray Ming
Genomics of Tropical Crop Plants Book PDF

Author : Paul H. Moore,Ray Ming
Publisher : Springer Science & Business Media
Page : 582 pages
File Size : 48,8 Mb
Release : 2008-01-03
Category : Science
ISBN : 9780387712192

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Genomics of Tropical Crop Plants by Paul H. Moore,Ray Ming Pdf

For a long time there has been a critical need for a book to assess the genomics of tropical plant species. At last, here it is. This brilliant book covers recent progress on genome research in tropical crop plants, including the development of molecular markers, and many more subjects. The first section provides information on crops relevant to tropical agriculture. The book then moves on to lay out summaries of genomic research for the most important tropical crop plant species.

Plant Genetics and Molecular Biology

Rajeev K. Varshney,Manish K. Pandey,Annapurna Chitikineni
Plant Genetics and Molecular Biology Book PDF

Author : Rajeev K. Varshney,Manish K. Pandey,Annapurna Chitikineni
Publisher : Springer
Page : 298 pages
File Size : 42,6 Mb
Release : 2018-09-04
Category : Science
ISBN : 9783319913131

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Plant Genetics and Molecular Biology by Rajeev K. Varshney,Manish K. Pandey,Annapurna Chitikineni Pdf

This book reviews the latest advances in multiple fields of plant biotechnology and the opportunities that plant genetics, genomics and molecular biology have offered for agriculture improvement. Advanced technologies can dramatically enhance our capacity in understanding the molecular basis of traits and utilizing the available resources for accelerated development of high yielding, nutritious, input-use efficient and climate-smart crop varieties. In this book, readers will discover the significant advances in plant genetics, structural and functional genomics, trait and gene discovery, transcriptomics, proteomics, metabolomics, epigenomics, nanotechnology and analytical & decision support tools in breeding. This book appeals to researchers, academics and other stakeholders of global agriculture.

Plant Genomics

Ibrokhim Y. Abdurakhmonov
Plant Genomics Book PDF

Author : Ibrokhim Y. Abdurakhmonov
Publisher : BoD – Books on Demand
Page : 312 pages
File Size : 52,5 Mb
Release : 2016-07-14
Category : Science
ISBN : 9789535124559

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Plant Genomics by Ibrokhim Y. Abdurakhmonov Pdf

Plant genomics aims to sequence, characterize, and study the genetic compositions, structures, organizations, functions, and interactions/networks of an entire plant genome. Its development and advances are tightly interconnected with proteomics, metabolomics, metagenomics, transgenomics, genomic selection, bioinformatics, epigenomics, phenomics, system biology, modern instrumentation, and robotics sciences. Plant genomics has significantly advanced over the past three decades in the land of inexpensive, high-throughput sequencing technologies and fully sequenced over 100 plant genomes. These advances have broad implications in every aspect of plant biology and breeding, powered with novel genomic selection and manipulation tools while generating many grand challenges and tasks ahead. This Plant genomics provides some updated discussions on current advances, challenges, and future perspectives of plant genome studies and applications.

Plant Genome Diversity Volume 2

Johann Greilhuber,Jaroslav Dolezel,Jonathan Wendel
Plant Genome Diversity Volume 2 Book PDF

Author : Johann Greilhuber,Jaroslav Dolezel,Jonathan Wendel
Publisher : Springer Science & Business Media
Page : 360 pages
File Size : 46,8 Mb
Release : 2012-11-13
Category : Science
ISBN : 9783709111604

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Plant Genome Diversity Volume 2 by Johann Greilhuber,Jaroslav Dolezel,Jonathan Wendel Pdf

This second of two volumes on Plant Genome Diversity provides, in 20 chapters, insights into the structural evolution of plant genomes with all its variations. Starting with an outline of plant phylogeny and its reconstruction, the second part of the volume describes the architecture and dynamics of the plant cell nucleus, the third examines the evolution and diversity of the karyotype in various lineages, including angiosperms, gymnosperms and monilophytes. The fourth part presents the mechanisms of polyploidization and its biological consequences and significance for land plant evolution. The fifth part deals with genome size evolution and its biological significance. Together with Volume I, this comprehensive book on the plant genome is intended for students and professionals in all fields of plant science, offering as it does a convenient entry into a burgeoning literature in a fast-moving field.