Plant Genomes

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Plant Genes, Genomes and Genetics

Erich Grotewold,Joseph Chappell,Elizabeth A. Kellogg
Plant Genes Genomes and Genetics Book PDF

Author : Erich Grotewold,Joseph Chappell,Elizabeth A. Kellogg
Publisher : John Wiley & Sons
Page : 261 pages
File Size : 52,5 Mb
Release : 2015-06-02
Category : Science
ISBN : 9781119998884

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Plant Genes, Genomes and Genetics by Erich Grotewold,Joseph Chappell,Elizabeth A. Kellogg Pdf

Plant Genes, Genomes and Genetics provides a comprehensive treatment of all aspects of plant gene expression. Unique in explaining the subject from a plant perspective, it highlights the importance of key processes, many first discovered in plants, that impact how plants develop and interact with the environment. This text covers topics ranging from plant genome structure and the key control points in how genes are expressed, to the mechanisms by which proteins are generated and how their activities are controlled and altered by posttranslational modifications. Written by a highly respected team of specialists in plant biology with extensive experience in teaching at undergraduate and graduate level, this textbook will be invaluable for students and instructors alike. Plant Genes, Genomes and Genetics also includes: specific examples that highlight when and how plants operate differently from other organisms special sections that provide in-depth discussions of particular issues end-of-chapter problems to help students recapitulate the main concepts rich, full-colour illustrations and diagrams clearly showing important processes in plant gene expression a companion website with PowerPoint slides, downloadable figures, and answers to the questions posed in the book Aimed at upper level undergraduates and graduate students in plant biology, this text is equally suited for advanced agronomy and crop science students inclined to understand molecular aspects of organismal phenomena. It is also an invaluable starting point for professionals entering the field of plant biology.

Plant Genome Diversity Volume 2

Johann Greilhuber,Jaroslav Dolezel,Jonathan Wendel
Plant Genome Diversity Volume 2 Book PDF

Author : Johann Greilhuber,Jaroslav Dolezel,Jonathan Wendel
Publisher : Springer Science & Business Media
Page : 360 pages
File Size : 41,7 Mb
Release : 2012-11-13
Category : Science
ISBN : 9783709111604

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Plant Genome Diversity Volume 2 by Johann Greilhuber,Jaroslav Dolezel,Jonathan Wendel Pdf

This second of two volumes on Plant Genome Diversity provides, in 20 chapters, insights into the structural evolution of plant genomes with all its variations. Starting with an outline of plant phylogeny and its reconstruction, the second part of the volume describes the architecture and dynamics of the plant cell nucleus, the third examines the evolution and diversity of the karyotype in various lineages, including angiosperms, gymnosperms and monilophytes. The fourth part presents the mechanisms of polyploidization and its biological consequences and significance for land plant evolution. The fifth part deals with genome size evolution and its biological significance. Together with Volume I, this comprehensive book on the plant genome is intended for students and professionals in all fields of plant science, offering as it does a convenient entry into a burgeoning literature in a fast-moving field.

The Wild Oryza Genomes

Tapan K. Mondal,Robert J. Henry
The Wild Oryza Genomes Book PDF

Author : Tapan K. Mondal,Robert J. Henry
Publisher : Springer
Page : 300 pages
File Size : 44,9 Mb
Release : 2018-02-15
Category : Science
ISBN : 9783319719979

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The Wild Oryza Genomes by Tapan K. Mondal,Robert J. Henry Pdf

This book focuses on the latest genome sequencing of the 25 wild Oryza species, public and private genomic resources, and their impact on genetic improvement research. It also addresses the untapped reservoir of agronomically important traits in wild Oryza species. Rice is a model crop plant that is frequently used to address several basic questions in plant biology, yet its wild relatives offer an untapped source of agronomically important alleles that are absent in the rice gene pool. The genus Oryza is extremely diverse, as indicated by a wide range of chromosome numbers, different ploidy levels and genome sizes. After a 13-year gap from the first sequencing of rice in the 2002, the genomes of 11 wild Oryza species have now been sequenced and more will follow. These vast genomic resources are extremely useful for addressing several basic questions on the origin of the genus, evolutionary relationships between the species, domestication, and environmental adaptation, and also help to substantiate molecular breeding and pre-breeding work to introgress useful characters horizontally from wild species into cultivated rice.

Plant Genome Editing with CRISPR Systems

Yiping Qi
Plant Genome Editing with CRISPR Systems Book PDF

Author : Yiping Qi
Publisher : Springer Nature
Page : 360 pages
File Size : 50,6 Mb
Release : 2019-01-04
Category : Science
ISBN : 9781493989911

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Plant Genome Editing with CRISPR Systems by Yiping Qi Pdf

This volume provides readers with wide-ranging coverage of CRISPR systems and their applications in various plant species. The chapters in this book discuss topics such as plant DNA repair and genome editing; analysis of CRISPR-induced mutations; multiplexed CRISPR/Cas9 systems; CRISPR-Cas12a (Cpf1) editing systems; and non-agrobacterium based CRISPR delivery systems. Written in the highly successful Methods in Molecular Biology series format, chapters include introductions to their respective topics, lists of the necessary materials and reagents, step-by-step, readily reproducible laboratory protocols, and tips on troubleshooting and avoiding known pitfalls. Comprehensive and thorough, Plant Genome Editing with CRISPR Systems: Methods and Protocols is a valuable resource for any researcher interested in learning about and using CRISPR systems in plants.

Plant Genomics Databases

Aalt D. J. van Dijk
Plant Genomics Databases Book PDF

Author : Aalt D. J. van Dijk
Publisher : Unknown
Page : 336 pages
File Size : 46,6 Mb
Release : 2017
Category : Botany
ISBN : 1493966588

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Plant Genomics Databases by Aalt D. J. van Dijk Pdf

This volume introduces databases containing the results from the recent revolution in sequencing technologies. Chapters in Plant Genomics Databases: Methods and Protocols describe database content, as well as typical use-cases. Some chapters explore databases that primarily present genome sequences focusing on one or a few related species, while others include additional datatypes and/or data from various plant species. Written in the highly successful Methods in Molecular Biology series format, chapters include introductions to their respective topics, step-by-step, readily reproducible protocols, and tips on troubleshooting and avoiding known pitfalls. Cutting-edge and comprehensive, Plant Genomics Databases: Methods and Protocols is a valuable resource for providing clear guidance in accessing an important collection of plant databases that can be used to add biological value to genomic data.

Plant Genomes

Jean-Nicolas Volff
Plant Genomes Book PDF

Author : Jean-Nicolas Volff
Publisher : Karger Medical and Scientific Publishers
Page : 155 pages
File Size : 50,5 Mb
Release : 2008-01-01
Category : Medical
ISBN : 9783805584913

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Plant Genomes by Jean-Nicolas Volff Pdf

Recent major advances in the field of comparative genomics and cytogenomics of plants, particularly associated with the completion of ambitious genome projects, have uncovered astonishing facets of the architecture and evolutionary history of plant genomes. The aim of this book was to review these recent developments as well as their implications in our understanding of the mechanisms which drive plant diversity. New insights into the evolution of gene functions, gene families and genome size are presented, with particular emphasis on the evolutionary impact of polyploidization and transposable elements. Knowledge on the structure and evolution of plant sex chromosomes, centromeres and microRNAs is reviewed and updated. Taken together, the contributions by internationally recognized experts present a panoramic overview of the structural features and evolutionary dynamics of plant genomes.This volume of Genome Dynamics will provide researchers, teachers and students in the fields of biology and agronomy with a valuable source of current knowledge on plant genomes.

From Plant Genomics to Plant Biotechnology

Palmiro Poltronieri,Natalija Burbulis,Corrado Fogher
From Plant Genomics to Plant Biotechnology Book PDF

Author : Palmiro Poltronieri,Natalija Burbulis,Corrado Fogher
Publisher : Elsevier
Page : 274 pages
File Size : 54,7 Mb
Release : 2013-08-31
Category : Science
ISBN : 9781908818478

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From Plant Genomics to Plant Biotechnology by Palmiro Poltronieri,Natalija Burbulis,Corrado Fogher Pdf

With the appearance of methods for the sequencing of genomes and less expensive next generation sequencing methods, we face rapid advancements of the -omics technologies and plant biology studies: reverse and forward genetics, functional genomics, transcriptomics, proteomics, metabolomics, the movement at distance of effectors and structural biology. From plant genomics to plant biotechnology reviews the recent advancements in the post-genomic era, discussing how different varieties respond to abiotic and biotic stresses, understanding the epigenetic control and epigenetic memory, the roles of non-coding RNAs, applicative uses of RNA silencing and RNA interference in plant physiology and in experimental transgenics and plants modified to specific aims. In the forthcoming years these advancements will support the production of plant varieties better suited to resist biotic and abiotic stresses, for food and non-food applications. This book covers these issues, showing how such technologies are influencing the plant field in sectors such as the selection of plant varieties and plant breeding, selection of optimum agronomic traits, stress-resistant varieties, improvement of plant fitness, improving crop yield, and non-food applications in the knowledge based bio-economy. Discusses a broad range of applications: the examples originate from a variety of sectors (including in field studies, breeding, RNA regulation, pharmaceuticals and biotech) and a variety of scientific areas (such as bioinformatics, -omics sciences, epigenetics, and the agro-industry) Provides a unique perspective on work normally performed 'behind closed doors'. As such, it presents an opportunity for those within the field to learn from each other, and for those on the 'outside' to see how different groups have approached key problems Highlights the criteria used to compare and assess different approaches to solving problems. Shows the thinking process, practical limitations and any other considerations, aiding in the understanding of a deeper approach

Plant Functional Genomics

Erich Grotewold
Plant Functional Genomics Book PDF

Author : Erich Grotewold
Publisher : Springer Science & Business Media
Page : 443 pages
File Size : 54,8 Mb
Release : 2008-02-03
Category : Science
ISBN : 9781592594139

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Plant Functional Genomics by Erich Grotewold Pdf

Functional genomics is a young discipline whose origin can be traced back to the late 1980s and early 1990s, when molecular tools became available to determine the cellular functions of genes. Today, functional genomics is p- ceived as the analysis, often large-scale, that bridges the structure and organi- tion of genomes and the assessment of gene function. The completion in 2000 of the genome sequence of Arabidopsis thaliana has created a number of new and exciting challenges in plant functional genomics. The immediate task for the plant biology community is to establish the functions of the approximately 25,000 genes present in this model plant. One major issue that will remain even after this formidable task is c- pleted is establishing to what degree our understanding of the genome of one model organism, such as the dicot Arabidopsis, provides insight into the or- nization and function of genes in other plants. The genome sequence of rice, completed in 2002 as a result of the synergistic interaction of the private and public sectors, promises to significantly enrich our knowledge of the general organization of plant genomes. However, the tools available to investigate gene function in rice are lagging behind those offered by other model plant systems. Approaches available to investigate gene function become even more limited for plants other than the model systems of Arabidopsis, rice, and maize.

The Handbook of Plant Genome Mapping

Khalid Meksem,Guenter Kahl
The Handbook of Plant Genome Mapping Book PDF

Author : Khalid Meksem,Guenter Kahl
Publisher : John Wiley & Sons
Page : 402 pages
File Size : 47,6 Mb
Release : 2006-03-06
Category : Science
ISBN : 9783527604432

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The Handbook of Plant Genome Mapping by Khalid Meksem,Guenter Kahl Pdf

While the complete sequencing of the genomes of model organisms such as a multitude of bacteria and archaea, the yeast Saccharomyces cerevisiae, the worm Caenorhabditis elegans, the fly Drosophila melanogaster, and the mouse and human genomes have received much public attention, the deciphering of plant genomeswas greatly lagging behind. Up to now, only two plant genomes, one of the model plant Arabidopsis thaliana and one of the crop species rice (Oryza sativa) have been sequenced, though a series of other crop genome sequencing projects are underway. Notwithstanding this public bias towards genomics of animals and humans, it is nevertheless of great importance for basic and applied sciences and industries in such diverse fields as agriculture, breeding in particular, evolutionary genetics, biotechnology, and food science to know the composition of crop plant genomes in detail. It is equally crucial for a deeper understanding of the molecular basis of biodiversity and synteny. The Handbook of Genome Mapping: Genetic and Physical Mapping is the first book on the market to cover these hot topics in considerable detail, and is set apart by its combination of genetic and physical mapping. Throughout, each chapter begins with an easy-to-read introduction, also making the book the first reference designed for non-specialists and newcomers, too. In addition to being an outstanding bench work reference, the book is an excellent textbook for learning and teaching genomics, in particular for courses on genome mapping. It also serves as an up-to-date guide for seasoned researchers involved in the genetic and physical mapping of genomes, especially plant genomes.

Plant Genome Diversity Volume 1

Jonathan Wendel,Johann Greilhuber,Jaroslav Dolezel,Ilia J. Leitch
Plant Genome Diversity Volume 1 Book PDF

Author : Jonathan Wendel,Johann Greilhuber,Jaroslav Dolezel,Ilia J. Leitch
Publisher : Springer Science & Business Media
Page : 282 pages
File Size : 52,9 Mb
Release : 2012-03-23
Category : Science
ISBN : 9783709111307

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Plant Genome Diversity Volume 1 by Jonathan Wendel,Johann Greilhuber,Jaroslav Dolezel,Ilia J. Leitch Pdf

In this timely new 2-volume treatise, experts from around the world have banded together to produce a first-of-its-kind synopsis of the exciting and fast moving field of plant evolutionary genomics. In Volume I of Plant Genome Diversity, an update is provided on what we have learned from plant genome sequencing projects. This is followed by more focused chapters on the various genomic “residents” of plant genomes, including transposable elements, centromeres, small RNAs, and the evolutionary dynamics of genes and non-coding sequences. Attention is drawn to advances in our understanding of plant mitochondrial and plastid genomes, as well as the significance of duplication in genic evolution and the non-independent evolution among sequences in plant genomes. Finally, Volume I provides an introduction to the vibrant new frontier of plant epigenomics, describing the current state of our knowledge and the evolutionary implications of the epigenomic landscape.

Plant Genes, Genomes and Genetics

Erich Grotewold,Joseph Chappell,Elizabeth A. Kellogg
Plant Genes Genomes and Genetics Book PDF

Author : Erich Grotewold,Joseph Chappell,Elizabeth A. Kellogg
Publisher : John Wiley & Sons
Page : 264 pages
File Size : 55,8 Mb
Release : 2015-04-27
Category : Science
ISBN : 9781118539361

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Plant Genes, Genomes and Genetics by Erich Grotewold,Joseph Chappell,Elizabeth A. Kellogg Pdf

Plant Genes, Genomes and Genetics provides a comprehensive treatment of all aspects of plant gene expression. Unique in explaining the subject from a plant perspective, it highlights the importance of key processes, many first discovered in plants, that impact how plants develop and interact with the environment. This text covers topics ranging from plant genome structure and the key control points in how genes are expressed, to the mechanisms by which proteins are generated and how their activities are controlled and altered by posttranslational modifications. Written by a highly respected team of specialists in plant biology with extensive experience in teaching at undergraduate and graduate level, this textbook will be invaluable for students and instructors alike. Plant Genes, Genomes and Genetics also includes: specific examples that highlight when and how plants operate differently from other organisms special sections that provide in-depth discussions of particular issues end-of-chapter problems to help students recapitulate the main concepts rich, full-colour illustrations and diagrams clearly showing important processes in plant gene expression a companion website with PowerPoint slides, downloadable figures, and answers to the questions posed in the book Aimed at upper level undergraduates and graduate students in plant biology, this text is equally suited for advanced agronomy and crop science students inclined to understand molecular aspects of organismal phenomena. It is also an invaluable starting point for professionals entering the field of plant biology.

The Barley Genome

Nils Stein,Gary J. Muehlbauer
The Barley Genome Book PDF

Author : Nils Stein,Gary J. Muehlbauer
Publisher : Springer
Page : 394 pages
File Size : 45,6 Mb
Release : 2018-08-18
Category : Science
ISBN : 9783319925288

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The Barley Genome by Nils Stein,Gary J. Muehlbauer Pdf

This book presents an overview of the state-of-the-art in barley genome analysis, covering all aspects of sequencing the genome and translating this important information into new knowledge in basic and applied crop plant biology and new tools for research and crop improvement. Unlimited access to a high-quality reference sequence is removing one of the major constraints in basic and applied research. This book summarizes the advanced knowledge of the composition of the barley genome, its genes and the much larger non-coding part of the genome, and how this information facilitates studying the specific characteristics of barley. One of the oldest domesticated crops, barley is the small grain cereal species that is best adapted to the highest altitudes and latitudes, and it exhibits the greatest tolerance to most abiotic stresses. With comprehensive access to the genome sequence, barley’s importance as a genetic model in comparative studies on crop species like wheat, rye, oats and even rice is likely to increase.

Plant Genomics

Ibrokhim Y. Abdurakhmonov
Plant Genomics Book PDF

Author : Ibrokhim Y. Abdurakhmonov
Publisher : BoD – Books on Demand
Page : 312 pages
File Size : 54,5 Mb
Release : 2016-07-14
Category : Science
ISBN : 9789535124559

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Plant Genomics by Ibrokhim Y. Abdurakhmonov Pdf

Plant genomics aims to sequence, characterize, and study the genetic compositions, structures, organizations, functions, and interactions/networks of an entire plant genome. Its development and advances are tightly interconnected with proteomics, metabolomics, metagenomics, transgenomics, genomic selection, bioinformatics, epigenomics, phenomics, system biology, modern instrumentation, and robotics sciences. Plant genomics has significantly advanced over the past three decades in the land of inexpensive, high-throughput sequencing technologies and fully sequenced over 100 plant genomes. These advances have broad implications in every aspect of plant biology and breeding, powered with novel genomic selection and manipulation tools while generating many grand challenges and tasks ahead. This Plant genomics provides some updated discussions on current advances, challenges, and future perspectives of plant genome studies and applications.

Plant Genomics and Proteomics

Christopher A. Cullis
Plant Genomics and Proteomics Book PDF

Author : Christopher A. Cullis
Publisher : John Wiley & Sons
Page : 230 pages
File Size : 53,6 Mb
Release : 2004-01-20
Category : Science
ISBN : 9780471488583

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Plant Genomics and Proteomics by Christopher A. Cullis Pdf

Plant research has stood at the forefront of the genomics revolution. One of the first genome projects, the sequencing of the commonly used model organism Arabidopsis, has already yielded important results for the study of a broad array of crops such as corn and soybeans. With crop and food bioengineering only in its infancy, the need to understand the fundamental genetic mechanisms of plants will only become more pressing. A comprehensive guide to this fascinating area of genomics, Plant Genomics and Proteomics presents an integrated, broadly accessible treatment of the complex relationship between the genome, transcriptome, and proteome of plants. This clearly written text introduces the reader to the range of molecular techniques applicable to investigating the unique facets of plant growth, development, and response to the environment. Coverage includes: Functional and structural genomics addressed within the context of current techniques and challenges to come How to utilize DNA and protein sequence data Practical considerations for choosing and employing the most commonly available computer applications A review of applications for biotechnology, including genetic modification and defense against pathogens Bioinformatics tools and Web resources Numerous examples from the latest research throughout Assuming no specialized knowledge of plant biology on the part of its reader, Plant Genomics and Proteomics provides an invaluable resource for students and researchers in biotechnology, plant biology, genomics, and bioinformatics.

Plant Genomics and Climate Change

David Edwards,Jacqueline Batley
Plant Genomics and Climate Change Book PDF

Author : David Edwards,Jacqueline Batley
Publisher : Springer
Page : 0 pages
File Size : 49,5 Mb
Release : 2018-04-19
Category : Science
ISBN : 149398070X

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Plant Genomics and Climate Change by David Edwards,Jacqueline Batley Pdf

This book explores the impact of climate change on agriculture and our future ability to produce the crops which are the foundation of the human diet. Specifically, individual chapters explore the potential for genomics assisted breeding of improved crops with greater yield and tolerance to the stresses associated with predicted climate change scenarios. Given the clear and unmet challenge to mitigate climate changing events, this book will be of wide interest from plant breeders and environmental scientists, government bodies through to a more general audience who are interested in the likely impact of climate change on agriculture.