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The purpose of this proceedings volume is to return to the starting point of bio-informatics and quantum information, fields that are growing rapidly at present, and to seriously attempt mutual interaction between the two, with a view to enumerating and solving the many fundamental problems they entail. For such a purpose, we look for interdisciplinary bridges in mathematics, physics, information and life sciences, in particular, research for new paradigm for information science and life science on the basis of quantum theory.
The purpose of this proceedings volume is to look for interdisciplinary bridges in mathematics, physics, information and life sciences, in particular, research for new paradigms for information and life sciences on the basis of quantum theory. The main areas in this volume are all related to one of the following subjects: (1) mathematical foundation of quantum mechanics, (2) quantum information, (3) quantum algorithm and computation, (4) quantum communication, (5) white noise analysis and quantum dynamics, (6) chaos dynamics and adaptive dynamics, (7) experimental studies of quantum computer, (8) bio-informatics and (9) genome analysis.
Quantum Bio-informatics Vi: From Quantum Information To Bio-informatics - Proceedings Of Quantum Bio-informatics 2014 by Luigi Accardi,Wolfgang Freudenberg,Noboru Watanabe Pdf
This volume seeks to return to the starting point of bio-informatics and quantum information, where these fields are constantly engaged in explosive advancements, and to seriously attempt mutual interaction between the two fields, with a view to enumerating and solving the many encountered fundamental problems. For such a purpose, we look for interdisciplinary bridges in mathematics, physics, information and life sciences, in particular, the research for a new paradigm for information science and life science on the basis of quantum theory.
Quantum Bio-informatics by Luigi Accardi,Wolfgang Freudenberg,Masanori Ohya Pdf
The purpose of this volume is examine bio-informatics and quantum information, which are growing rapidly at present, and to attempt to connect the two, with a view to enumerating and solving the many fundamental problems they entail. To this end, we look for interdisciplinary bridges in mathematics, physics, and information and life sciences. In particular, research into a new paradigm for information science and life science on the basis of quantum theory is emphasized. Sample Chapter(s). Markov Fields on Graphs (599 KB). Contents: Markov Fields on Graphs (L Accardi & H Ohno); Some Aspects of Time Operators (A Arai); Time Optimal Quantum Control of Mixed States (A Carlini et al.); On a Quantum Model of the Recognition Process (K-H Fichtner et al.); Perspectives of White Noise Analysis (T Hida); Review on Quantum Chaos Algorithm and Generalized Quantum Turing Machine (S Iriyama & M Ohya); Cauchy Problems for Some Biological Systems OCo Modelling by Stochastic Differential Equations (A Jamiolkowski); On Non-Markovian Time Evolution in Open Quantum Systems (A Kossakowski & R Rebolledo); Adaptive Dynamics and Its Applications to Chaos and NPC Problem (M Ohya); Micro-Macro Duality and Emergence of Macroscopic Levels (I Ojima); Josephson Flux Qubit (H Takayanagi); Note on Quantum Mutual Entropy Type Measures (N Watanabe); Toward in Silico Biology (From Sequence to Systems) (I Yamato et al.); and other papers. Readership: Physicists, researchers in quantum information and bioinformatics.
Quantum Bio-informatics V by Luigi Accardi,Wolfgang Freudenberg,Masanori Ohya Pdf
This volume is based on the fifth international conference of quantumbio-informatics held at the QBI Center of Tokyo University of Science.This volume provides a platform to connect mathematics, physics, information and life sciences, and in particular, research for new paradigm for information science and life science on the basis of quantum theory.The following topics are discussed: Cryptographic algorithms; Quantum algorithm and computation; Quantum entanglement; Quantum entropy and information dynamics; Quantum dynamics and time operator; Stochastic dynamics and white noise analysis; Brain activity; Quantum-like models and PD game; Quantum physics and superconductivity; Quantum tomography and sufficiency; Adaptation in Plants; Alignment of sequences
Quantum Bio-informatics III by Luigi Accardi,Wolfgang Freudenberg,Masanori Ohya Pdf
The purpose of this proceedings volume is to look for interdisciplinary bridges in mathematics, physics, information and life sciences, in particular, research for new paradigms for information and life sciences on the basis of quantum theory. The main areas in this volume are all related to one of the following subjects: (1) quantum information, (2) bio-informatics and (3) the interrelation between (1) and (2).
Quantum Bio-informatics by Luigi Accardi,Wolfgang Freudenberg,Masanori Ohya Pdf
The purpose of this volume is examine bio-informatics and quantum information, which are growing rapidly at present, and to attempt to connect the two, with a view to enumerating and solving the many fundamental problems they entail. To this end, we look for interdisciplinary bridges in mathematics, physics, and information and life sciences. In particular, research into a new paradigm for information science and life science on the basis of quantum theory is emphasized.
Quantum Adaptivity in Biology: From Genetics to Cognition by Masanari Asano,Andrei Khrennikov,Masanori Ohya,Yoshiharu Tanaka,Ichiro Yamato Pdf
This book examines information processing performed by bio-systems at all scales: from genomes, cells and proteins to cognitive and even social systems. It introduces a theoretical/conceptual principle based on quantum information and non-Kolmogorov probability theory to explain information processing phenomena in biology as a whole. The book begins with an introduction followed by two chapters devoted to fundamentals, one covering classical and quantum probability, which also contains a brief introduction to quantum formalism, and another on an information approach to molecular biology, genetics and epigenetics. It then goes on to examine adaptive dynamics, including applications to biology, and non-Kolmogorov probability theory. Next, the book discusses the possibility to apply the quantum formalism to model biological evolution, especially at the cellular level: genetic and epigenetic evolutions. It also presents a model of the epigenetic cellular evolution based on the mathematical formalism of open quantum systems. The last two chapters of the book explore foundational problems of quantum mechanics and demonstrate the power of usage of positive operator valued measures (POVMs) in biological science. This book will appeal to a diverse group of readers including experts in biology, cognitive science, decision making, sociology, psychology, and physics; mathematicians working on problems of quantum probability and information and researchers in quantum foundations.
Quantum Bio-informatics III by Luigi Accardi,Wolfgang Freudenberg,Masanori Ohya Pdf
Classical and quantum conditioning : mathematical and information theoretical aspects / L. Accardi -- Dynamics and potentials / F. Araki -- Kossakowski-Ohya teleportation scheme and its applications / M. Asano, M. Ohya and Y. Tanaka -- Utility and value of information in cognitive science, biology and quantum theory / R.V. Belavkin -- Spectral properties of entanglement witnesses and positive maps / D. Chruściński -- Quantum entanglement and multipartite symmetric states / D. Chruściński -- On a quantum model of brain activities / K.-H. Fichtner [und weitere] -- Some of the recent topics in white noise theory / T. Hida -- Note on generalized white noise functionals / T. Hida -- On estimation of the position distribution of the ideal Bose gas / K.-H. Fichtner, K. Inoue and M. Ohya -- On generalization of quantum mutual entropy by using liftings / S. Iriyama and M. Ohya -- A new approach to stroboscopic tomography of open systems / A. Jamiolkowski -- An introduction to frames and their applications to quantum optics / A. Jamiolkowski -- Memory in a nonlocally damped oscillator / D. Chruściński and J. Jurkowski -- An introduction to quantization of dissipative systems. The damped harmonic oscillator case / J. Jurkowski -- Classical and quantum probability for biologists - introduction / A. Khrennikov -- 2-adic degeneration of the genetic code and energy of binding of codons / A. Yu. Khrennikov and S.V. Kozyrev -- On positive maps; PPT states and entanglement / W.A. Majewski -- Detecting entanglement in spin lattice models / M. Michalski -- How to detect entanglement in quantum systems / M. Michalskii -- Tunneling study on high-T[symbol] superconductors / M. Minematsu, S. Kawashima and N. Miyakawa -- Quantum dynamics of superconducting qubit readout with a driven nonlinear Josephson oscillator / H. Nakano -- Roles of asymptotic condition and S-matrix as micro-macro duality in QFT / I. Ojima -- Gaussian Markov triplets / D. Petz and J. Pitrik -- pre-mRNA introns as a model for cryptographic algorithm : theory and experiments / M. Regoli -- Duality arising from multiple Markov Gaussian processes / Si Si and W.W. Htay -- Novel computational approaches to drug discovery / J. Skolnick and M. Brylinski -- Feynman type formulae for quantum evolution and diffusion on manifolds and graphs / O.G. Smolyanov -- Poisson noise and the dynamics of infinite particle systems / L. Streit -- Replica-exchange molecular dynamics simulations of Amyloid precursor protein dimer in membrane / N. Miyashita and Y. Sugita -- Comparison of square contingency tables using measure of departure from marginal homogeneity / K. Tahata [und weitere] -- On the statics for micro-array data analysis / T. Urushibara [und weitere] -- Functional mechanics and time irreversibility problem / I.V. Volovich -- Regulatory networks : inferring functional relationships through co-expression / D. Wanke [und weitere] -- On entropies of quantum dynamical systems / N. Watanabe -- Significant improvement of sequence alignment can be done by considering transition probability between two consecutive pairs of residues / T. Ham, K. Sato and M. Ohya -- A computational approach to explore protein translocation through Type III secretion apparatus / T. Rathinavelan and W. Im -- Carbon nanotubes for building blocks of quantum computing devices / K. Ishibashi [und weitere] -- In silico analysis for the study of botulinum toxin structure / T. Suzuki and S. Miyazaki -- Gene discovery methods from large-scale gene expression data / A. Shimizu and K. Yano
Quantum Bio-Informatics IV by Luigi Accardi,Wolfgang Freudenberg,Masanori Ohya Pdf
The purpose of this proceedings volume is to return to the starting point of bio-informatics and quantum information, fields that are growing rapidly at present, and to seriously attempt mutual interaction between the two, with a view to enumerating and solving the many fundamental problems they entail. For such a purpose, we look for interdisciplinary bridges in mathematics, physics, information and life sciences, in particular, research for new paradigm for information science and life science on the basis of quantum theory. Contents:The QP–DYN Algorithms (L Accardi et al.)New Types of Quantum Entropies and Additive Information Capacities (V P Belavkin)Self-Collapses of Quantum Systems and Brain Activities (K-H Fichtner et al.)The Passage from Digital to Analogue in White Noise Analysis and Applications (T Hida)On Quantum Algorithm for Exptime Problem (S Iriyama & M Ohya)On Sufficient Algebraic Conditions for Identification of Quantum States (A Jamiołkowski)Classical Wave Model of Quantum-Like Processing in Brain (A Khrennikov)Entanglement Mapping vs. Quantum Conditional Probability Operator (D Chruściński et al.)Space(-Time) Emergence as Symmetry Breaking Effect (I Ojima)On the Correspondence between Newtonian and Functional Mechanics (E V Piskovskiy & I V Volovich)Signaling Network of Environmental Sensing and Adaptation in Plants: Key Roles of Calcium Ion (K Kuchitsu & T Kurusu)NetzCope: A Tool for Displaying and Analyzing Complex Networks (M J Barber et al.)and other papers Readership: Researchers in quantum information, quantum physics, bio-informatics and life science. Keywords:Quantum Information;Quantum Probability;Quantum Computer;Bioinformatics;Genes;Adaptive Dynamics;White Noise Analysis;Entanglement;Quantum Entropy;SuperconductivityKey Features:Quantum informationBio-InformaticsGlobal research mixing the Quantum information and Bio-Informatics with various mathematical sciences
Quantum Bio-Informatics V by Luigi Accardi,Wolfgang Freudenberg,Masanori Ohya Pdf
This volume is based on the fifth international conference of quantum bio-informatics held at the QBI Center of Tokyo University of Science. This volume provides a platform to connect mathematics, physics, information and life sciences, and in particular, research for new paradigm for information science and life science on the basis of quantum theory. The following topics are discussed: Cryptographic algorithmsQuantum algorithm and computationQuantum entanglementQuantum entropy and information dynamicsQuantum dynamics and time operatorStochastic dynamics and white noise analysisBrain activityQuantum-like models and PD gameQuantum physics and superconductivityQuantum tomography and sufficiencyAdaptation in PlantsAlignment of sequencesContents:Complexity Considerations Quantum Computation (Luigi Accardi)Oscillations and Rolling for Duffing's Equation (Irina Ya Aref'eva, Evgeny V Piskovskiy and Igor V Volovich)A Mathematical Treatment of Joint and Conditional Probability (Masanori Asano, Masanori Ohya, Yoshiharu Tanaka, Ichiro Yamato, Irina Besieva and Andrei Khrennikov)Minimum of Information Distance Criterion for Optimal Control of Mutation Rate in Evolutionary Systems (Roman V Belavkin)On Non-Markovian Quantum Evolution (Dariusz Chruściński and Andrzej Kossakowski)Internal Noise of EEG-Measurements and Certain Boson Systems (Karl-Heinz Fichtner, Lars Fichtner, Kei Inoue and Masanori Ohya)Space – Time – Noise (Raum – Zeit – Rauschen) (Takeyuki Hida)A New Noise Depending on a Space Parameter and Its Application (Si Si and Win Win Htay)Schrödinger Type Semigroups via Feynman Formulae and All That (Oleg G Smolyanov)On Treatment of Gaussian Communication Process by Quantum Entropies (Noboru Watanabe)Signaling Networks Involving Reactive Oxygen Species and Ca2+ in Plants (Kazuyuki Kuchitsu)Energy Flow and Information Flow in Superconducting Qubit Measurement Process (Hayato Nakano)Counter-factual Phenomenon in Quantum Mechanics (Yutaka Shikano)and other papers Readership: Researchers in quantum information, quantum physics, bio-informatics and life sciences. Keywords:Quantum Information;Quantum Probability;Quantum Computer;Bioinformatics;Genes;Adaptive Dynamics;White Noise Analysis;Entanglement;Quantum Entropy;Superconductivity
