Spatial Dynamics And Pattern Formation In Biological Populations
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Spatial Dynamics and Pattern Formation in Biological Populations by Ranjit Kumar Upadhyay,Satteluri R. K. Iyengar Pdf
Covers the fundamental concepts and mathematical skills required to analyse reaction-diffusion models for biological populations. Focuses on mathematical modeling and numerical simulations using basic conceptual and classic models of population dynamics, Virus and Brain dynamics. Covers wide range of models using spatial and non-spatial approaches. Covers single, two and multispecies reaction-diffusion models from ecology and models from bio-chemistry. Uses Mathematica for problem solving and MATLAB for pattern formations. Contains solved Examples and Problems in Exercises.
Spatial Dynamics and Pattern Formation in Biological Populations by Ranjit Kumar Upadhyay,Satteluri R. K. Iyengar Pdf
The book provides an introduction to deterministic (and some stochastic) modeling of spatiotemporal phenomena in ecology, epidemiology, and neural systems. A survey of the classical models in the fields with up to date applications is given. The book begins with detailed description of how spatial dynamics/diffusive processes influence the dynamics of biological populations. These processes play a key role in understanding the outbreak and spread of pandemics which help us in designing the control strategies from the public health perspective. A brief discussion on the functional mechanism of the brain (single neuron models and network level) with classical models of neuronal dynamics in space and time is given. Relevant phenomena and existing modeling approaches in ecology, epidemiology and neuroscience are introduced, which provide examples of pattern formation in these models. The analysis of patterns enables us to study the dynamics of macroscopic and microscopic behaviour of underlying systems and travelling wave type patterns observed in dispersive systems. Moving on to virus dynamics, authors present a detailed analysis of different types models of infectious diseases including two models for influenza, five models for Ebola virus and seven models for Zika virus with diffusion and time delay. A Chapter is devoted for the study of Brain Dynamics (Neural systems in space and time). Significant advances made in modeling the reaction-diffusion systems are presented and spatiotemporal patterning in the systems is reviewed. Development of appropriate mathematical models and detailed analysis (such as linear stability, weakly nonlinear analysis, bifurcation analysis, control theory, numerical simulation) are presented. Key Features Covers the fundamental concepts and mathematical skills required to analyse reaction-diffusion models for biological populations. Concepts are introduced in such a way that readers with a basic knowledge of differential equations and numerical methods can understand the analysis. The results are also illustrated with figures. Focuses on mathematical modeling and numerical simulations using basic conceptual and classic models of population dynamics, Virus and Brain dynamics. Covers wide range of models using spatial and non-spatial approaches. Covers single, two and multispecies reaction-diffusion models from ecology and models from bio-chemistry. Models are analysed for stability of equilibrium points, Turing instability, Hopf bifurcation and pattern formations. Uses Mathematica for problem solving and MATLAB for pattern formations. Contains solved Examples and Problems in Exercises. The Book is suitable for advanced undergraduate, graduate and research students. For those who are working in the above areas, it provides information from most of the recent works. The text presents all the fundamental concepts and mathematical skills needed to build models and perform analyses.
Spatiotemporal Patterns in Ecology and Epidemiology by Horst Malchow,Sergei V. Petrovskii,Ezio Venturino Pdf
Although the spatial dimension of ecosystem dynamics is now widely recognized, the specific mechanisms behind species patterning in space are still poorly understood and the corresponding theoretical framework is underdeveloped. Going beyond the classical Turing scenario of pattern formation, Spatiotemporal Patterns in Ecology and Epidemiology:
Modelling Biological Populations in Space and Time by Eric Renshaw Pdf
This volume develops a unifying approach to population studies, emphasising the interplay between modelling and experimentation. Throughout, mathematicians and biologists are provided with a framework within which population dynamics can be fully explored and understood. Aspects of population dynamics covered include birth-death and logistic processes, competition and predator-prey relationships, chaos, reaction time-delays, fluctuating environments, spatial systems, velocities of spread, epidemics, and spatial branching structures. Both deterministic and stochastic models are considered. Whilst the more theoretically orientated sections will appeal to mathematical biologists, the material is presented so that readers with little mathematical expertise can bypass these without losing the main flow of the text.
Spatial Ecology addresses the fundamental effects of space on the dynamics of individual species and on the structure, dynamics, diversity, and stability of multispecies communities. Although the ecological world is unavoidably spatial, there have been few attempts to determine how explicit considerations of space may alter the predictions of ecological models, or what insights it may give into the causes of broad-scale ecological patterns. As this book demonstrates, the spatial structure of a habitat can fundamentally alter both the qualitative and quantitative dynamics and outcomes of ecological processes. Spatial Ecology highlights the importance of space to five topical areas: stability, patterns of diversity, invasions, coexistence, and pattern generation. It illustrates both the diversity of approaches used to study spatial ecology and the underlying similarities of these approaches. Over twenty contributors address issues ranging from the persistence of endangered species, to the maintenance of biodiversity, to the dynamics of hosts and their parasitoids, to disease dynamics, multispecies competition, population genetics, and fundamental processes relevant to all these cases. There have been many recent advances in our understanding of the influence of spatially explicit processes on individual species and on multispecies communities. This book synthesizes these advances, shows the limitations of traditional, non-spatial approaches, and offers a variety of new approaches to spatial ecology that should stimulate ecological research.
Integrodifference Equations in Spatial Ecology by Frithjof Lutscher Pdf
This book is the first thorough introduction to and comprehensive treatment of the theory and applications of integrodifference equations in spatial ecology. Integrodifference equations are discrete-time continuous-space dynamical systems describing the spatio-temporal dynamics of one or more populations. The book contains step-by-step model construction, explicitly solvable models, abstract theory and numerical recipes for integrodifference equations. The theory in the book is motivated and illustrated by many examples from conservation biology, biological invasions, pattern formation and other areas. In this way, the book conveys the more general message that bringing mathematical approaches and ecological questions together can generate novel insights into applications and fruitful challenges that spur future theoretical developments. The book is suitable for graduate students and experienced researchers in mathematical ecology alike.
Metacommunities by Marcel Holyoak,Mathew A. Leibold,Robert D. Holt Pdf
Takes the hallmarks of metapopulation theory to the next level by considering a group of communities, each of which may contain numerous populations, connected by species interactions within communities and the movement of individuals between communities. This book seeks to understand how communities work in fragmented landscapes.
Pattern Formation In The Physical And Biological Sciences by H. Frederick Nijhout Pdf
This Lecture Notes Volume represents the first time any of the summer school lectures have been collected and published on a discrete subject rather than grouping all of a season's lectures together. This volume provides a broad survey of current thought on the problem of pattern formation. Spanning six years of summer school lectures, it includes articles which examine the origin and evolution of spatial patterns in physio-chemical and biological systems from a great diversity of theoretical and mechanistic perspectives. In addition, most of these pieces have been updated by their authors and three articles never previously published have been added.
Spatial Ecology by David Tilman,Peter M. Kareiva Pdf
Spatial Ecology addresses the fundamental effects of space on the dynamics of individual species and on the structure, dynamics, diversity, and stability of multispecies communities. Although the ecological world is unavoidably spatial, there have been few attempts to determine how explicit considerations of space may alter the predictions of ecological models, or what insights it may give into the causes of broad-scale ecological patterns. As this book demonstrates, the spatial structure of a habitat can fundamentally alter both the qualitative and quantitative dynamics and outcomes of ecological processes. Spatial Ecology highlights the importance of space to five topical areas: stability, patterns of diversity, invasions, coexistence, and pattern generation. It illustrates both the diversity of approaches used to study spatial ecology and the underlying similarities of these approaches. Over twenty contributors address issues ranging from the persistence of endangered species, to the maintenance of biodiversity, to the dynamics of hosts and their parasitoids, to disease dynamics, multispecies competition, population genetics, and fundamental processes relevant to all these cases. There have been many recent advances in our understanding of the influence of spatially explicit processes on individual species and on multispecies communities. This book synthesizes these advances, shows the limitations of traditional, non-spatial approaches, and offers a variety of new approaches to spatial ecology that should stimulate ecological research.
Pattern Formation in Biology, Vision and Dynamics by Alessandra Carbone,Misha Gromov,Przemsylaw Prusinkiewicz Pdf
Half a billion years of evolution have turned the eye into an unbelievable pattern detector. Everything we perceive comes in delightful multicolored forms. Now, in the age of science, we want to comprehend what and why we see. Two dozen outstanding biologists, chemists, physicists, psychologists, computer scientists and mathematicians met at the Institut d'Hautes Etudes Scientifiques in Bures-sur-Yvette, France. They expounded their views on the physical, biological and physiological mechanisms creating the tapestry of patterns we see in molecules, plants, insects, seashells, and even the human brain. This volume comprises surveys of different aspects of pattern formation and recognition, and is aimed at the scientifically minded reader. p>Sample Chapter(s) Chapter 1.1: Introduction (242 KB) Chapter 1.2: Single blind agent with finite memory (170 KB) Chapter 1.3: Single blind agent with inflnite memory (190 KB) Chapter 1.4: Single sighted agent receiving cues from the environment (one-way exogenous control) (315 KB) Chapter 1.5: Single sighted agent receiving cues from the structure (two-way exogenous control) (165 KB) Chapter 1.6: Single self-controlled agent (endogenous control) (176 KB) Chapter 1.7: Multiple blind agents with finite memory (189 KB) Chapter 1.8: Multiple blind agents with infinite memory (124 KB) Chapter 1.9: Multiple sighted agents (264 KB) Contents:Growth and Form:Paradigms of Pattern Formation — Towards a Computational Theory of Morphogenesis (P Prusinkiewicz)Growth and Form of Sponges and Corals in a Moving Fluid (J A Kaandorp & P M A Sloot)From Pseudo-Random Numbers to Stochastic Growth Models and Texture Images (L P Yaroslavsky)Crystal Growth, Biological Cell Growth, and Geometry (J W Cannon et al.)Recent Results on Aperiodic Wang Tilings (J Kari)Reaction-Diffusion and Beyond:Biological Pattern Formation as a Complex Dynamic Phenomenon (H Meinhardt)Andronov Bifurcations and Sea Shell Patterns (M Argentina & P Coullet)Rational and Irrational Angles in Phyllotaxis (Y Couder & S Douady)Cellular Patterns:Organogenetic Cellular Patterning in Plants (P W Barlow et al.)A Classification of Plant Meristems Based on Cellworks (3D L-Systems). The Maintainance and Complexity of Their Cellular Patterns (J Lück & H B Lück)Plant Meristems and Their Patterns (B Zagórska-Marek)Mechanical Stress Patterns in Plant Cell Walls and Their Morphogenetical Importance (Z Hejnowicz)Tensorial Model for Growth and Cell Division in the Shoot Apex (J Nakielski)DNA and Genetic Control:DNA Nanotechnology — From Topological Control to Structural Control (N C Seeman)3D DNA Patterns and Computation (N Jonoska)Circular Suggestions for DNA Computing (T Head)DNA Computing by Matching — Sticker Systems and Watson-Crick Automata (G Paun)Images and Perception:Aspects of Human Shape Perception (J Ninio)Pattern Recognition in the Visual System and the Nature of Neural Coding (S Thorpe)How Can Singularity Theory Help in Image Processing? (M Briskin et al.) Readership: Biologists, mathematicians and computer scientists. Keywords:Growth Models;L-Systems;Cell Growth;Phyllotaxis;Cellular Patterns;DNA Nanotechnology;DNA Computation;Tiling;Vision;Pattern Recognition;Shape PerceptionReviews: “This gorgeously produced book gives an important entrée into the emerging world of biological mathematics … One of the most revolutionary and exciting areas discussed in this book is that of DNA computing and DNA nanotechnology … Mathematicians should find this book a fascinating introduction as well as a useful source book.” Journal la Gazette des Mathematiciens
Essential Mathematical Biology by Nicholas F. Britton Pdf
This self-contained introduction to the fast-growing field of Mathematical Biology is written for students with a mathematical background. It sets the subject in a historical context and guides the reader towards questions of current research interest. A broad range of topics is covered including: Population dynamics, Infectious diseases, Population genetics and evolution, Dispersal, Molecular and cellular biology, Pattern formation, and Cancer modelling. Particular attention is paid to situations where the simple assumptions of homogenity made in early models break down and the process of mathematical modelling is seen in action.
Partial Differential Equations in Ecology by Sergei Petrovski Pdf
Partial differential equations (PDEs) have been used in theoretical ecology research for more than eighty years. Nowadays, along with a variety of different mathematical techniques, they remain as an efficient, widely used modelling framework; as a matter of fact, the range of PDE applications has even become broader. This volume presents a collection of case studies where applications range from bacterial systems to population dynamics of human riots.
Cellular Automaton Modeling of Biological Pattern Formation by Andreas Deutsch,Sabine Dormann Pdf
This text explores the use of cellular automata in modeling pattern formation in biological systems. It describes several mathematical modeling approaches utilizing cellular automata that can be used to study the dynamics of interacting cell systems both in simulation and in practice. New in this edition are chapters covering cell migration, tissue development, and cancer dynamics, as well as updated references and new research topic suggestions that reflect the rapid development of the field. The book begins with an introduction to pattern-forming principles in biology and the various mathematical modeling techniques that can be used to analyze them. Cellular automaton models are then discussed in detail for different types of cellular processes and interactions, including random movement, cell migration, adhesive cell interaction, alignment and cellular swarming, growth processes, pigment cell pattern formation, tissue development, tumor growth and invasion, and Turing-type patterns and excitable media. In the final chapter, the authors critically discuss possibilities and limitations of the cellular automaton approach in modeling various biological applications, along with future research directions. Suggestions for research projects are provided throughout the book to encourage additional engagement with the material, and an accompanying simulator is available for readers to perform their own simulations on several of the models covered in the text. QR codes are included within the text for easy access to the simulator. With its accessible presentation and interdisciplinary approach, Cellular Automaton Modeling of Biological Pattern Formation is suitable for graduate and advanced undergraduate students in mathematical biology, biological modeling, and biological computing. It will also be a valuable resource for researchers and practitioners in applied mathematics, mathematical biology, computational physics, bioengineering, and computer science. PRAISE FOR THE FIRST EDITION “An ideal guide for someone with a mathematical or physical background to start exploring biological modelling. Importantly, it will also serve as an excellent guide for experienced modellers to innovate and improve their methodologies for analysing simulation results.” —Mathematical Reviews
Dynamic Models in Biology offers an introduction to modern mathematical biology. This book provides a short introduction to modern mathematical methods in modeling dynamical phenomena and treats the broad topics of population dynamics, epidemiology, evolution, immunology, morphogenesis, and pattern formation. Primarily employing differential equations, the author presents accessible descriptions of difficult mathematical models. Recent mathematical results are included, but the author's presentation gives intuitive meaning to all the main formulae. Besides mathematicians who want to get acquainted with this relatively new field of applications, this book is useful for physicians, biologists, agricultural engineers, and environmentalists. Key Topics Include: Chaotic dynamics of populations The spread of sexually transmitted diseases Problems of the origin of life Models of immunology Formation of animal hide patterns The intuitive meaning of mathematical formulae explained with many figures Applying new mathematical results in modeling biological phenomena Miklos Farkas is a professor at Budapest University of Technology where he has researched and instructed mathematics for over thirty years. He has taught at universities in the former Soviet Union, Canada, Australia, Venezuela, Nigeria, India, and Columbia. Prof. Farkas received the 1999 Bolyai Award of the Hungarian Academy of Science and the 2001 Albert Szentgyorgyi Award of the Hungarian Ministry of Education. A 'down-to-earth' introduction to the growing field of modern mathematical biology Also includes appendices which provide background material that goes beyond advanced calculus and linear algebra