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Author : Francis Martin
Publisher : Unknown
Page : 384 pages
File Size : 46,8 Mb
Release : 2014
Category : Ecology
ISBN : 1118729714
Author : Wayne M. Jurick II,Ke Dong
Publisher : Unknown
Page : 380 pages
File Size : 49,6 Mb
Release : 2018-06
Category : Electronic
ISBN : 1642230111
Fungi are cryptic, understudied and hyperdiverse organisms. Fungi are poorly documented organisms and the phylogenetic relationships within the kingdom are not yet fully understood, but recent efforts have been shedding light on the evolutionary history of the Fungi. Fungi have been known and used by humans for centuries, but mycology traces beginnings to the 18th century, with the development of the microscope. While much has been discovered since then, fungi remain today a cryptic and understudied group of organisms. The tools of molecular biology and genomics can help us meet this challenge. Over the past decades, genomics, and genome sequencing in particular, have emerged as powerful tools for biological research. In the last few years, due to the introduction of the next-generation sequencing (NGS) technologies, these tools went through dramatic transformations. Ecological Genomics of Fungi brings together studies related to pathogenic fungi, fungal biology, and all other aspects of fungal research. It covers a broad diversity of fungal systems and provides unique insight into the functions of those fungi in various ecosystems - from soil, to plant, to human. It also discusses tools, applications, and the most recent developments available to explore the biology of soil fungi at the molecular level. This book addresses the wonders of fungal diversity, including recent advances on the understanding of the evolution of the kingdom Fungi, approaches to documenting and interpreting fungal diversity, and current efforts concerning fungal conservation. The book also includes investigations of fungi and their traditional allies that relate structure and function to growth, reproduction, morphogenesis, differentiation, its role as pathogen and parasites, its applications in various fields like industry and agriculture and medicinal uses.
Author : Benjamin A. Horwitz,Prasun K. Mukherjee,Mala Mukherjee,Christian P. Kubicek
Publisher : Springer Science & Business Media
Page : 394 pages
File Size : 52,6 Mb
Release : 2013-08-30
Category : Science
ISBN : 9783642393396
This volume addresses the similarities and also the differences in the genomes of soil saprophytes, symbionts, and plant pathogens by using examples of fungal species to illustrate particular principles. It analyzes how the specific interactions with the hosts and the influence of the environment may have shaped genome evolution. The relevance of fungal genetic research and biotechnological applications is shown for areas such as plant pathogenesis, biomass degradation, litter decomposition, nitrogen assimilation, antibiotic production, mycoparasitism, energy, ecology, and also for soil fungi turning to human pathogens. In addition to the model organisms Neurospora and Aspergillus, the following species are covered providing a view of pathogens and mutualists: Trichoderma, Fusarium oxysporum, Cochliobolus heterostrophus, Penicillium chrysogenum, Rhizopus oryzae, Podospora anserina, and species belonging to Agaricomycetes, Archaeorhizomycetes and Magnaporthaceae. Ecology and potential applications have guided the choice of fungal genes to be studied and it will be fascinating to follow the trends of future sequencing projects.
Author : Christian R. Landry,Nadia Aubin-Horth
Publisher : Springer Science & Business Media
Page : 358 pages
File Size : 49,7 Mb
Release : 2013-11-25
Category : Science
ISBN : 9789400773479
Researchers in the field of ecological genomics aim to determine how a genome or a population of genomes interacts with its environment across ecological and evolutionary timescales. Ecological genomics is trans-disciplinary by nature. Ecologists have turned to genomics to be able to elucidate the mechanistic bases of the biodiversity their research tries to understand. Genomicists have turned to ecology in order to better explain the functional cellular and molecular variation they observed in their model organisms. We provide an advanced-level book that covers this recent research and proposes future development for this field. A synthesis of the field of ecological genomics emerges from this volume. Ecological Genomics covers a wide array of organisms (microbes, plants and animals) in order to be able to identify central concepts that motivate and derive from recent investigations in different branches of the tree of life. Ecological Genomics covers 3 fields of research that have most benefited from the recent technological and conceptual developments in the field of ecological genomics: the study of life-history evolution and its impact of genome architectures; the study of the genomic bases of phenotypic plasticity and the study of the genomic bases of adaptation and speciation.
Author : Nico M. van Straalen,Dick Roelofs
Publisher : Oxford University Press
Page : 374 pages
File Size : 49,5 Mb
Release : 2012
Category : Science
ISBN : 9780199594689
The authors also provide a comparative survey of the properties of genomes (genome size, gene families, synteny, and polymorphism) for prokaryotes as well as the main eukaryotic models.
Author : Stefanie Pöggeler,Johannes Wöstemeyer
Publisher : Springer Science & Business Media
Page : 355 pages
File Size : 52,6 Mb
Release : 2011-07-07
Category : Science
ISBN : 9783642199745
Based on sequence analyses of many different genes, the past decade has provided us with a profound knowledge of fungal systematics and phylogeny. In addition, a number of sequences of complete fungal genomes have been identified and several others will soon follow. In this volume, leading experts address questions concerning the origin of the fungal kingdom and fungal evolution at a level of analytical refinement that has never been possible before. The following major aspects are highlighted: evolutionary roots of fungi; evolution of signaling in fungi and fungal-like organisms; evolution of mutualistic systems and metabolism in fungi; and evolutionary mechanisms and trends.
Author : John Dighton,James White,Peter Oudemans
Publisher : CRC Press
Page : 1028 pages
File Size : 55,6 Mb
Release : 1992-06-26
Category : Science
ISBN : 082478605X
Entirely rewritten and updated throughout, this Second Edition maintains and enhances the features of the first edition. The Fungal Community, Second Edition continues to cover the entire spectrum of fungal ecology, from studies of individual fungal populations to the functional role of fungi at the ecosystem level, and to present mycological ecology as a rational, organized body of knowledge.;Acting as a bridge between mycological data and ecological theory, The Fungal Community, Second Edition offers such new features as an emphasis on the nonequilibrium perspective, including the impact of habitat disturbance and environmental stress; more information on the ecological genetics of fungal populations; a chapter on the fitness of genetically altered fungi when released into the environment; an examination of fungal morphological and physiological adaptations from the evolutionary ecologist's point-of-view; an explication of the effect of fungi and insect interactions on fungal community structure and decomposition processes; a section on the importance of fungi in determining patterns of plant community development; and a chapter on modeling fungal contributions to decomposition and nutrient cycling in ecosystems.;With over 3700 references, The Fungal Community, Second Edition is a resource for mycologists; microbial ecologists; microbiologists; geneticists; virologists; plant pathologists; cell and molecular biologists; biotechnologists; soil, forest, and environmental scientists; and graduate-level students in these disciplines.
Author : Anonim
Publisher : Elsevier
Page : 433 pages
File Size : 54,5 Mb
Release : 2004-02-25
Category : Science
ISBN : 9780080527468
Research in the genomics of a handful of fungi has matured at an unprecedented rate allowing comprehensive review. Developments in fungal genomics should be of great significance to new strategies in fields where disciplinary crossovers of fungal genomics, genes and their regulation, expression, and engineering will have a strong impact in dealing with agriculture, foods, natural resources, life sciences, biotechnology, informatics, metabolomics, pharmaceuticals and bioactive compounds. This volume analyzes the commonly used molecular markers systems, and elaborates the development of biochemical genetics, which provides a model system that established the relationship between genes and enzymes. Current knowledge about the genomic and genetic variability of Candida albicans, the polymorphic fungus that is an opportunistic human pathogen of increasing medical importance, has been covered in detail. Current understanding of the genetics and functional genomic analysis of the most important fungal pathogens of staple food crops, rice and wheat among others is covered including chapters dealing with the genomics of economically important fungi such asMagnaporthe grisea, Aspergillus, Fusarium, Penicillium, Trichoderma, Rhizoctonia, Mycosphaerella graminicola, and entomopathogenic fungi. With several thousand recent citations, it is hoped that volume four will serve as a useful reference for knowledgeable veterans and beginners as well as those crossing disciplinary boundaries into the exciting field of biotechnology, genomics and bioinformatics of fungi.
Author : Anonim
Publisher : Academic Press
Page : 344 pages
File Size : 42,9 Mb
Release : 2017-11-17
Category : Science
ISBN : 9780128132623
Fungal Phylogenetics and Phylogenomics, Volume 99, the latest release in the Advances in Genetics series, presents users with new chapters that delve into such topics as the Advances of fungal phylogenomics and the impact on fungal systematics, Data crunching for fungal phylogenomics: insights into data collection and phylogenetic inference based on genome data for fungi, Genomic and epigenomic traits of emerging fungal pathogens, Advances in fungal gene cluster diversity and evolution, Phylogenomics of Fusarium oxysporum species complex, Phylogenomic analyses of pathogenic yeasts, and the Phylogenetics and phylogenomics of rust fungi. The series continually publishes important reviews of the broadest interest to geneticists and their colleagues in affiliated disciplines, critically analyzing future directions. Critically analyzes future directions for the study of clinical genetics Written and edited by recognized leaders in the field Presents new medical breakthroughs that are occurring as a result of advances in our knowledge of genetics
Author : Joseph Heitman,Barbara J. Howlett,Pedro W. Crous,Eva H. Stukenbrock,Timothy Yong James,Neil A. R. Gow
Publisher : John Wiley & Sons
Page : 1136 pages
File Size : 43,7 Mb
Release : 2020-07-10
Category : Medical
ISBN : 9781555819583
Fungi research and knowledge grew rapidly following recent advances in genetics and genomics. This book synthesizes new knowledge with existing information to stimulate new scientific questions and propel fungal scientists on to the next stages of research. This book is a comprehensive guide on fungi, environmental sensing, genetics, genomics, interactions with microbes, plants, insects, and humans, technological applications, and natural product development.
Author : Ronald P. de Vries,Adrian Tsang,Igor V. Grigoriev
Publisher : Humana
Page : 291 pages
File Size : 40,6 Mb
Release : 2019-06-21
Category : Science
ISBN : 1493992902
This volume details protocols covering nearly all aspects of fungal genomics. New and updated chapters guide the reader through experimental genomics, biotechnologies, and the analysis and processing of data. Written in the highly successful Methods in Molecular Biology series format, chapters include introductions to their respective topics, lists of the necessary materials and reagents, step-by-step, readily reproducible laboratory protocols, and tips on troubleshooting and avoiding known pitfalls. Authoritative and practical, Fungal Genomics : Methods and Protocols, Second Edition aims to ensure successful results in the further study of this vital field.
Author : Francis Martin,Stephane Uroz
Publisher : Springer Nature
Page : 370 pages
File Size : 50,6 Mb
Release : 2022-12-15
Category : Science
ISBN : 9781071628713
This volume guides researchers on how to characterize, image rare, and hitherto unknown taxa and their interactions, to identify new functions and biomolecules and to understand how environmental changes condition the activity and the response of the organisms living with us and in our environment. Chapters cover different organism types (i.e., archaea, bacteria, fungi, protest, microfauna and microeukaryotes) and propose detailed protocols to produce high quality DNA, to analyse active microbial communities directly involved in complex interactions or processes through stable isotope probing, to identify and characterize of new functional genes, to image in situ interactions and to apply bioinformatics analysis tools to complex metagenomic or RNAseq sequence data. Written in the successful Methods in Molecular Biology series format, chapters include introductions to their respective topics, lists of the necessary materials and reagents, step-by-step, readily reproducible protocols, and notes on troubleshooting and avoiding known pitfalls. Authoritative and cutting-edge, Microbial Environmental Genomics (MEG): Methods and Protocols, Second Edition aims to serve as a primary research reference for researchers in microbiology working to in the expanding field of molecular ecology and environmental genomics.
Author : John Dighton,James F. White
Publisher : CRC Press
Page : 652 pages
File Size : 52,6 Mb
Release : 2017-03-16
Category : Nature
ISBN : 9781498706674
"...a number of chapters provide excellent summaries of the modern methods available for studying fungal ecology, along with those more traditional methods that are still extremely valuable...overall it is a hugely valuable compendium of fungal ecology research. It is a must for the library shelf." -Lynne Boddy, Cardiff University, UK, Mycological Research, 2006 "These 44 chapters are an excellent starting point for anyone interested in fungal communities, in the broadest sense of the term. It is a book for dipping into...may be the last comprehensive treatment of fungal communities before the molecular revolution." -Meriel Jones, University of Liverpool, UK, Microbiology Today "... the scope of the work is tremendous. ... Excellent chapters providing overviews of methods ... provide a snap shot of the current approaches used to understand fungal communities at several levels of organization. This book should probably be on the shelf of every student of mycology, and many ecologists too. For all students, this book should be a valuable resource and source of inspiration." -Daniel Henk, Imperial College Faculty of Medicine, London, in Inoculum, Vol. 59, No. 3, May 2008 "Thorough taxonomic and subject indices further aid the reader in navigating through multiple authors’ treatments of subjects of interest." - Anthony Amend, Department of Botany, University of Hawaii at Manoa in Economic Botany, V. 61 In all subjects in science, new findings and the use of new technologies allow us to develop an ever-greater understanding of our world. Expanded and updated coverage in the fourth edition includes: Adds new sections on Integrating Genomics and Metagenomics into Community Analysis, Recent Advances in Fungal Endophyte Research, Fungi in the Built Environment, and Fungal Signaling and Communication Includes a broader treatment of fungal communities in natural ecosystems with in-depth coverage of fungal adaptations to stress and conservation Expands coverage of the influence of climate change on fungi and the role of fungi in organically polluted ecosystems Includes contributions from scientists from 20 nations to illustrate a true global approach for bridging gaps between ecological concepts and mycology
Author : Anonim
Publisher : Elsevier
Page : 501 pages
File Size : 51,6 Mb
Release : 2014-05-19
Category : Science
ISBN : 9780123984777
Advances in Botanical Research publishes in-depth and up-to-date reviews on a wide range of topics in plant sciences. Currently in its 70th volume, the series features several reviews by recognized experts on all aspects of plant genetics, biochemistry, cell biology, molecular biology, physiology and ecology. This thematic volume features reviews on fungi, including pathogenic fungi, symbiotic fungi, saprotrophic fungi and population genomics. Publishes in-depth and up-to-date reviews on a wide range of topics in plant sciences Features a wide range of reviews by recognized experts on all aspects of plant genetics, biochemistry, cell biology, molecular biology, physiology, and ecology Volume features reviews on fungi, including pathogenic fungi, symbiotic fungi, saprotrophic fungi, and population genomics
Author : Jin-Rong Xu,Burton H. Bluhm
Publisher : Humana Press
Page : 0 pages
File Size : 55,7 Mb
Release : 2011-05-27
Category : Science
ISBN : 1617790397
Having experienced unprecedented growth since the turn of the millennium, the dramatic expansion of resources and techniques in fungal genomics is poised to fundamentally redefine the study of fungal biology. In Fungal Genomics: Methods and Protocols, expert researchers explore the three most likely fronts upon which the field will advance: the sequencing of more and more fungal genomes, the mining of sequenced genomes for useful information, and most importantly, the use of genomics sequences to provide a foundation for powerful techniques to explain biological processes. Much of the book is dedicated to explaining established and emerging genomics-based technologies in filamentous fungi, including gene expression profiling techniques, techniques for fungal proteomics as well as various case studies that could be adapted to a wide range of fungi. Written in the highly successful Methods in Molecular BiologyTM series format, protocol chapters include brief introductions to their respective topics, lists of the necessary materials and reagents, step-by-step laboratory protocols, and key unpublished tips, potential pitfalls, common mistakes, and special considerations based on the unique experiences of the contributors. Authoritative and cutting-edge, Fungal Genomics: Methods and Protocols provides fungal biologists at any stage of their careers a user-friendly resource for fungal genomics, especially as readers branch out into unfamiliar but exciting new areas of study.