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The Radish Genome by Takeshi Nishio,Hiroyasu Kitashiba Pdf
This book summarizes the latest information and the status quo of radish genome studies to stimulate innovations and improvements in breeding techniques and to promote further advances in the field. Radish (Raphanus sativus) is a member of the Brassicaceae family and is cultivated worldwide. Its varieties have been diversified in terms of size, shape, and the color of their roots and bio-components. Thanks to the development of high-throughput molecular techniques using next generation sequencers, complete genomes of cultivated and wild radish plants have been sequenced and published with annotations of predicted genes and single nucleotide polymorphism (SNP) information between radish cultivars and accessions. These, together with the construction of a high-density genetic map of radish and profiling of expression sequences in radish organs, have accelerated genetic studies, such as the identification of genes or loci associated with root development, pungent components, and plant disease resistance. Providing an overview of these advances, this book is a valuable resource for scientists involved in plant genetic research and crop breeding.
Genetics and Genomics of the Brassicaceae by Renate Schmidt,Ian Bancroft Pdf
The Genetics and Genomics of the Brassicaceae provides a review of this important family (commonly termed the mustard family, or Cruciferae). The family contains several cultivated species, including radish, rocket, watercress, wasabi and horseradish, in addition to the vegetable and oil crops of the Brassica genus. There are numerous further species with great potential for exploitation in 21st century agriculture, particularly as sources of bioactive chemicals. These opportunities are reviewed, in the context of the Brassicaceae in agriculture. More detailed descriptions are provided of the genetics of the cultivated Brassica crops, including both the species producing most of the brassica vegetable crops (B. rapa and B. oleracea) and the principal species producing oilseed crops (B. napus and B. juncea). The Brassicaceae also include important “model” plant species. Most prominent is Arabidopsis thaliana, the first plant species to have its genome sequenced. Natural genetic variation is reviewed for A. thaliana, as are the genetics of the closely related A. lyrata and of the genus Capsella. Self incompatibility is widespread in the Brassicaceae, and this subject is reviewed. Interest arising from both the commercial value of crop species of the Brassicaceae and the importance of Arabidopsis thaliana as a model species, has led to the development of numerous resources to support research. These are reviewed, including germplasm and genomic library resources, and resources for reverse genetics, metabolomics, bioinformatics and transformation. Molecular studies of the genomes of species of the Brassicaceae revealed extensive genome duplication, indicative of multiple polyploidy events during evolution. In some species, such as Brassica napus, there is evidence of multiple rounds of polyploidy during its relatively recent evolution, thus the Brassicaceae represent an excellent model system for the study of the impacts of polyploidy and the subsequent process of diploidisation, whereby the genome stabilises. Sequence-level characterization of the genomes of Arabidopsis thaliana and Brassica rapa are presented, along with summaries of comparative studies conducted at both linkage map and sequence level, and analysis of the structural and functional evolution of resynthesised polyploids, along with a description of the phylogeny and karyotype evolution of the Brassicaceae. Finally, some perspectives of the editors are presented. These focus upon the Brassicaceae species as models for studying genome evolution following polyploidy, the impact of advances in genome sequencing technology, prospects for future transcriptome analysis and upcoming model systems.
Case Studies of Breeding Strategies in Major Plant Species by Haiping Wang Pdf
Conventional plant breeding has significantly improved crop yield, disease resistance, and adaptability to the environment; however, it is difficult to cultivate breakthrough new varieties using conventional breeding techniques. As such, new and novel breeding techniques are being developed. This book presents a comprehensive overview of plant breeding. It is organized into four sections on 'Genetic Resources for Plant Breeding”, 'Breeding Theory and Strategy”, 'Breeding Practice and Cases”, and 'The Perspective for Plant Breeding”.
Advances in Root Vegetables Research by Prashant Kaushik Pdf
Root vegetables are the sections of underground plants that are harvested and consumed by humans for their nutritional value. They are found in a wide variety of plant species. Even though botany draws a distinction between real roots and non-roots, the term “root vegetable” refers to both kinds in the context of agriculture and cuisine, despite botany classifying genuine roots as separate from non-roots. Root vegetables are often storage organs that store energy in the form of carbohydrates. This book explores recent developments in root vegetable research against the background of current and impending environmental change.
Allele Mining for Genomic Designing of Vegetable Crops by Chittaranjan Kole,Tusar Kanti Behera,Prashant Kaushik Pdf
This book deliberates on the concept, strategies, tools, and techniques of allele mining in vegetable crops and its application potential in genome elucidation and improvement including studying allele evolution, discovery of superior alleles, discerning new haplotypes, assessment of intra- and interspecific similarity, and studies of gene expression and gene prediction. Available gene pools in global germplasm collections specifically consisting of wild allied species and local landraces for almost all major crops have facilitated allele mining. Development of advanced genomic techniques including PCR-based allele priming and Eco-TILLING based allele mining are being widely used now for mining superior alleles. Allele's discovery has become more relevant now for employing molecular breeding to develop designed crop varieties matching consumer needs and with genome plasticity to adapt the climate change scenarios. All these concepts and strategies along with precise success stories are presented in the chapters dedicated to the major vegetable crops. 1. The first book on the novel strategy of allele mining in vegetable crops for precise breeding 2. Presents genomic strategies for mining superior alleles underlying agronomic traits from genomic resources 3. Depicts case studies of PCR-based allele priming and Eco-TILLING based allele mining 4. Elaborates on gene discovery and gene prediction in major vegetable crops This book will be useful to the students and faculties in various plant science disciplines including genetics, genomics, molecular breeding, agronomy, and bioinformatics; the scientists in seed industries; and, the policymakers and funding agencies interested in crop improvement.
Achieving Nutritional Security and Food Safety Through Genomics-Based Breeding of Crops by Reyazul Rouf Mir,Sachiko Narita Isobe,Manish Kumar Pandey,Ajay Kumar Pdf
Omics in Horticultural Crops by Gyana Ranjan Rout,K.V. Peter Pdf
Omics in Horticulture Crops presents a comprehensive view of germplasm diversity, genetic evolution, genomics, proteomics and transcriptomics of fruit crops (temperate, tropical and subtropical fruits, fruit nuts, berries), vegetables, tuberous crops, ornamental and floricultural crops and medicinal aromatic plants. Information covering phenomics, genetic diversity, phylogenetic studies, genome sequencing, and genome barcoding through the utilization of molecular markers plays an imperative role in the characterization and effective utilization of diverse germplasm are included in the book. This is a valuable reference for researchers and academics seeking to improve cultivar productivity through enhanced genetic diversity while also retaining optimal traits and protecting the growing environment. Highlights perspectives, progress and promises of -omics application Provides a systematic overview of origin, progenitor and domestication process as well as genetic insights Includes full range of horticultural crops
Genetics, Genomics and Breeding of Vegetable Brassicas by Jan Sadowski,Chittaranjan Kole Pdf
Due to their diversity, vegetable Brassicas are of great economic import and offer unique opportunities to enrich our knowledge about plant growth, development, and rapid phenotypic evolution. By applying emerging genomic technologies, we may greatly increase our understanding of the Brassica biology and breeding efficiency. This volume contains 11
Advances in Botanical Research by Surinder Kumar Gupta Pdf
Rapeseed is an important oilseed crop belonging to Crucifereae family and grown in subtropical to temperate climate. Recent discoveries have caused the scientific community to respond positively by directing a greater amount of research towards increasing production and improving the quality of rapeseed oil. Today, the annual worldwide production is approximately 7.5 million tons on 4 million acres. Canola ranks 5th in the production of world's oilseed crops following soybean, sunflower, groundnut and cottonseed. Rapeseed Breeding fully explains the miraculous discoveries about the genetic material which have contributed to the growth of this important crop. With contributions from world-renowned researchers from North America, Europe, Asia, and Australia, this book provides the first scientific reference for scientists interested in the further exploitation of this important crop. * Presents history, origin and evolution, breeding methods, practical applications of DNA markers, fingerprinting of cultivars, and conservation of rapeseed germplasm * Includes detail of different breeding purposes including breeding for improved oil and meal quality, breeding for winter hardiness, breeding for herbicides, and breeding for hybrid rape. * Provides analysis of ecology, usage, degeneration and application
Evolution of Gene Regulatory Networks in Plant Development by Federico Valverde,Andrew Groover,José M. Romero Pdf
During their life cycle plants undergo a wide variety of morphological and developmental changes. Impinging these developmental processes there is a layer of gene, protein and metabolic networks that are responsible for the initiation of the correct developmental transitions at the right time of the year to ensure plant life success. New omic technologies are allowing the acquisition of massive amount of data to develop holistic and integrative analysis to understand complex processes. Among them, Microarray, Next-generation Sequencing (NGS) and Proteomics are providing enormous amount of data from different plant species and developmental stages, thus allowing the analysis of gene networks globally. Besides, the comparison of molecular networks from different species is providing information on their evolutionary history, shedding light on the origin of many key genes/proteins. Moreover, developmental processes are not only genetically programed but are also affected by internal and external signals. Metabolism, light, hormone action, temperature, biotic and abiotic stresses, etc. have a deep effect on developmental programs. The interface and interplay between these internal and external circuits with developmental programs can be unraveled through the integration of systematic experimentation with the computational analysis of the generated omics data (Molecular Systems Biology). This Research Topic intends to deepen in the different plant developmental pathways and how the corresponding gene networks evolved from a Molecular Systems Biology perspective. Global approaches for photoperiod, circadian clock and hormone regulated processes; pattern formation, phase-transitions, organ development, etc. will provide new insights on how plant complexity was built during evolution. Understanding the interface and interplay between different regulatory networks will also provide fundamental information on plant biology and focus on those traits that may be important for next-generation agriculture.
Part of the seven-volume series Genome Mapping and Molecular Breeding in Plants, the volume Oilseeds is devoted to oil-producing field crops such as soybeans, oilseed rape, peanuts, sunflowers, Indian mustard, Brassica rapa, black mustard and flax. While the grouping of economic plants is conventionally based on their agricultural purposes, several crops covered in this volume have other uses besides yielding oils. Brassica rapa is also used as a vegetable, the sunflower as an ornamental, and flax as a fibre crop. Black mustard, which is used as a condiment but is genetically close to other Brassica species, is also included here.
Somatic Genome Manipulation by Xiu-Qing Li,Danielle J. Donnelly,Thomas G. Jensen Pdf
Somatic genome manipulation is required when a sexual crossing approach cannot be used in breeding or genetic treatment of an individual organism. Examples can include gene- or cell-therapy of a person to correct disease, genetic improvement of vegetatively propagated plants, and genetic replacement of cytoplasm without significantly modifying the nuclear genome. The advantage of somatic genome manipulation is maintenance of the general genotype while correcting one or more traits. Somatic genome manipulation is also an option for genetic improvement of sexually propagated plants in polyploidy breeding or in overcoming issues of sexual incompatibility. Recent novel technologies in somatic genome manipulation are developing quickly but much of this literature is fragmented and difficult or inconvenient to access. This book represents the first attempt to assemble updated reviews, detailed protocols, and their applications in all fields in which somatic genome manipulation has thrived. This is a truely one-of-a-kind work that brings together the most important and relevant advances in somatic genome manipulation in plants, algae, microorganisms, humans and animals, and demonstrates where the science interacts and where it diverges. The chapters are written by experts on the topic with ready-to-use protocols that were originally developed or adapted from the literature in their laboratories. We expect that this book will be useful for students, researchers, and teachers in both plant and animal research as a resource for the latest information on somatic genome manipulation and for its useful laboratory methods.
The Pigeonpea Genome by Rajeev K. Varshney,Rachit K. Saxena,Scott A. Jackson Pdf
Pigeonpea (Cajanus cajan) is a crop of small land holding farmers in arid and semi-arid regions of the world. It has a number of usages starting from protein rich food to vegetarian families; fuel wood; nitrogen supplier to soil; recycling minerals in soil to animal feed etc. Pigeonpea has been considered to be originated and domesticated in central India from where it travelled to different parts of the world such as Africa and Latin America. In ongoing scenario of climate change, biotic and especially abiotic stresses will make the conditions more challenging for entire agriculture. This volume focusing on the pigeonpea genome will collate the information on the genome sequencing and its utilization in genomics activities, with a focus on the current findings, advanced tools and strategies deployed in pigeonpea genome sequencing and analysis, and how this information is leading to direct outcomes for plant breeders and subsequently to farmers.
Mitochondrial Genome Evolution by Laurence Marechal-Drouard Pdf
Advances in Botanical Research publishes in-depth and up-to-date reviews on a wide range of topics in plant sciences. Features a wide range of reviews by recognized experts on all aspects of plant genetics, biochemistry, cell biology, molecular biology, physiology and ecology. This thematic volume features reviews on Mitochondrial genome evolution. Publishes in-depth and up-to-date reviews on a wide range of topics in plant sciences Features a wide range of reviews by recognized experts on all aspects of plant genetics, biochemistry, cell biology, molecular biology, physiology and ecology This thematic volume features reviews on mitochondrial genome evolution
Brassicas and Legumes From Genome Structure to Breeding by Toshiyuki Nagata,Satoshi Tabata Pdf
Genome sequence studies have become more and more important for plant breeding. Brassicas and Legumes: From Genome Structure to Breeding comprises 16 chapters and presents both an overview and the latest results of this rapidly expanding field. Topics covered include: genome analysis of a flowering plant, Arabidopsis thaliana; the sequence of the Arabidopsis genome as a tool for comparative structural genomics in Brassicaceae; application of molecular markers in Brassica coenospecies; the molecular genetic basis of flowering time variation in Brassica species; quantitative trait loci for clubroot resistance in Brassica oleracea; structural differences of S locus between Brassica oleracea and Brassica rapa; Brassica and legume chromosomes; sequence analysis of the Lotus japonicus genome; introduction of an early flowering accession ‘Miyakojima’ MG-20 to molecular genetics in Lotus japonicus; genetic linkage map of the model legume Lotus japonicus; construction of a high quality genome library of Lotus japonicus; genome analysis of Mesorhizobium loti: a symbiotic partner to Lotus japonicus; molecular linkage map of the model legume Medicago truncatula; genetic mapping of seed and nodule protein markers in diploid alfalfa (Medicago sativa); mapping the chickpea (Cicer arietinum) genome: localization of fungal resistance genes in interspecific crosses.
