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Author : Hongchen Jiang,Xiangyu Guan,Werner W. E. Müller,Qiang Li
Publisher : Frontiers Media SA
Page : 191 pages
File Size : 53,7 Mb
Release : 2023-09-06
Category : Science
ISBN : 9782832533505
Author : Lunhui Lu,Dayong Zhao,Leonardo D. Fernández,Zhe Li
Publisher : Frontiers Media SA
Page : 188 pages
File Size : 40,8 Mb
Release : 2023-11-27
Category : Science
ISBN : 9782832539873
Dams or barriers are among the most significant anthropogenic threats to global freshwater ecosystems, although they provide invaluable services for shipping, hydropower generation, flood protection, and storage of drinking and irrigation water. River fragmentations due to dams and barriers lead the aquatic landscape into isolated river sections, resulting in hydromorphological discontinuities along longitudinal or lateral gradients. Fragmented river habitats are unstable. They experience uncertain disturbances in both time and space with random and complex hydrological and environmental processes, such as water flow, particulate matter sedimentation, reservoir regulation, and terrestrial input. The diversity, composition, functionality, and activity of microbial communities are important indicators of river ecosystem functions and services. Yet, river fragmentations are likely to disrupt and reconstruct microbial communities, redirecting the patterns of biogeochemical cycles of biogenic elements. Methodology, such as mathematical models, is still limited to describing and elucidating microbial processes under changing hydrological environments in the fragmented rivers. Thus, how do the riverine microbial communities and ecosystem functions respond to the fragmentation in rivers? This Research Topic represents a collective focus on microbial ecology, functional diversity, and new microbial modeling in fragmented rivers. We wish to present new findings in community assembly mechanisms, biotic interactions, functional diversity, and ecosystem functioning responses to the river fragmentations. New perspectives will also provide us with deep insights into the ecological effects of river fragmentation. This Research Topic aims to present the original research articles and reviews to provide new findings on microbial diversity and ecosystem functioning in fragmented rivers worldwide. We welcome original research, reviews, mini-reviews, opinions, methods, hypotheses and theories, and perspectives. The directions include but are not limited to the following aspects: - The continuum of the microbial community in responses to dams or barriers. - Novel microbial community assembly mechanisms, functional traits, and biotic interactions in fragmented rivers at local, regional, and global scales. - Functional genes, functional groups, and functional diversity in driving biogenic element cycles. - Mathematical modeling in aquatic microbial ecology.
Author : Oana Teodora Moldovan,Ľubomír Kováč,Stuart Halse
Publisher : Springer
Page : 545 pages
File Size : 45,7 Mb
Release : 2019-01-05
Category : Science
ISBN : 9783319988528
Cave organisms are the ‘monsters’ of the underground world and studying them invariably raises interesting questions about the ways evolution has equipped them to survive in permanent darkness and low-energy environments. Undertaking ecological studies in caves and other subterranean habitats is not only challenging because they are difficult to access, but also because the domain is so different from what we know from the surface, with no plants at the base of food chains and with a nearly constant microclimate year-round. The research presented here answers key questions such as how a constant environment can produce the enormous biodiversity seen below ground, what adaptations and peculiarities allow subterranean organisms to thrive, and how they are affected by the constraints of their environment. This book is divided into six main parts, which address: the habitats of cave animals; their complex diversity; the environmental factors that support that diversity; individual case studies of cave ecosystems; and of the conservation challenges they face; all of which culminate in proposals for future research directions. Given its breadth of coverage, it offers an essential reference guide for graduate students and established researchers alike.
Author : Susanne Liebner,Lars Ganzert
Publisher : Walter de Gruyter GmbH & Co KG
Page : 285 pages
File Size : 50,6 Mb
Release : 2021-01-18
Category : Science
ISBN : 9783110497083
The cryosphere stands for environments where water appears in a frozen form. It includes permafrost, glaciers, ice sheets, and sea ice and is currently more affected by Global Change than most other regions of the Earth. In the cryosphere, limited water availability and subzero temperatures cause extreme conditions for all kind of life which microorganisms can cope with extremely well. The cryosphere’s microbiota displays an unexpectedly large genetic potential, and taxonomic as well as functional diversity which, however, we still only begin to map. Also, microbial communities influence reaction patterns of the cryosphere towards Global Change. Altered patterns of seasonal temperature fluctuations and precipitation are expected in the Arctic and will affect the microbial turnover of soil organic matter (SOM). Activation of nutrients by thawing and increased active layer thickness as well as erosion renders nutrient stocks accessible to microbial activities. Also, glacier melt and retreat stimulate microbial life in turn influencing albedo and surface temperatures. In this context, the functional resilience of microbial communities in the cryosphere is of major interest. Particularly important is the ability of microorganisms and microbial communities to respond to changes in their surroundings by intracellular regulation and population shifts within functional niches, respectively. Research on microbial life exposed to permanent freeze or seasonal freeze-thaw cycles has led to astonishing findings about microbial versatility, adaptation, and diversity. Microorganisms thrive in cold habitats and new sequencing techniques have produced large amounts of genomic, metagenomic, and metatranscriptomic data that allow insights into the fascinating microbial ecology and physiology at low and subzero temperatures. Moreover, some of the frozen ecosystems such as permafrost constitute major global carbon and nitrogen storages, but can also act as sources of the greenhouse gases methane and nitrous oxide. In this book we summarize state of the art knowledge on whether environmental changes are met by a flexible microbial community retaining its function, or if the altered conditions also render the community in a state of altered properties that affect the Earth’s element cycles and climate. This book brings together research on the cryosphere’s microbiota including permafrost, glaciers, and sea ice in Arctic and Antarctic regions. Different spatial scales and levels of complexity are considered, spanning from ecosystem level to pure culture studies of model microbes in the laboratory. It aims to attract a wide range of parties with interest in the effect of climate change and/or low temperatures on microbial nutrient cycling and physiology.
Author : Silvia Pajares,Brendan J.M. Bohannan,Valeria Souza
Publisher : Frontiers Media SA
Page : 175 pages
File Size : 41,6 Mb
Release : 2017-01-13
Category : Electronic book
ISBN : 9782889450671
Tropical ecosystems are different in important ways from those of temperate regions. They are a major reservoir of plant and animal biodiversity and play important roles in global climate regulation and biogeochemical cycling. They are also under great threat due to the conversion of tropical ecosystems to other uses. Thus, in the context of global change, it is crucial to understand how environmental factors, biogeographic patterns, and land use changes interact to influence the structure and function of microbial communities in these ecosystems. The contributions to this Research Topic showcase the current knowledge regarding microbial ecology in tropical ecosystems, identify many challenges and questions that remain to be addressed and open up new horizons in our understanding of the environmental and anthropological factors controlling microbial communities in these important ecosystems.
Author : Min Zhang,Francisco Martinez-Capel,Xiaodong Qu,Naicheng Wu
Publisher : Frontiers Media SA
Page : 217 pages
File Size : 50,6 Mb
Release : 2023-03-13
Category : Science
ISBN : 9782832517178
Author : Malin Bomberg,Lasse Ahonen
Publisher : Frontiers Media SA
Page : 143 pages
File Size : 51,6 Mb
Release : 2017-07-17
Category : Electronic book
ISBN : 9782889451791
The deep subsurface is, in addition to space, one of the last unknown frontiers to human kind. A significant part of life on Earth resides in the deep subsurface, hiding great potential of microbial life of which we know only little. The conditions in the deep terrestrial subsurface are thought to resemble those of early Earth, which makes this environment an analog for studying early life in addition to possible extraterrestrial life in ultra-extreme conditions. Early microorganisms played a great role in shaping the conditions on the young Earth. Even today deep subsurface microorganisms interact with their geological environment transforming the conditions in the groundwater and on rock surfaces. Essential elements for life are richly present but in difficultly accessible form. The elements driving the microbial deep life is still not completely identified. Most of the microorganisms detected by novel molecular techniques still lack cultured representatives. Nevertheless, using modern sequencing techniques and bioinformatics the functional roles of these microorganisms are being revealed. We are starting to see the differences and similarities between the life in the deep subsurface and surface domains. We may even begin to see the function of evolution by comparing deep life to life closer to the surface of Earth. Deep life consists of organisms from all known domains of life. This Research Topic reveals some of the rich diversity and functional properties of the great biomass residing in the deep dark subsurface.
Author : Jürg B. Logue,Stuart E. G. Findlay,Jérôme Comte
Publisher : Frontiers Media SA
Page : 263 pages
File Size : 52,5 Mb
Release : 2016-01-20
Category : Electronic book
ISBN : 9782889197231
Advances in next generation sequencing technologies, omics, and bioinformatics are revealing a tremendous and unsuspected diversity of microbes, both at a compositional and functional level. Moreover, the expansion of ecological concepts into microbial ecology has greatly advanced our comprehension of the role microbes play in the functioning of ecosystems across a wide range of biomes. Super-imposed on this new information about microbes, their functions and how they are organized, environmental gradients are changing rapidly, largely driven by direct and indirect human activities. In the context of global change, understanding the mechanisms that shape microbial communities is pivotal to predict microbial responses to novel selective forces and their implications at the local as well as global scale. One of the main features of microbial communities is their ability to react to changes in the environment. Thus, many studies have reported changes in the performance and composition of communities along environmental gradients. However, the mechanisms underlying these responses remain unclear. It is assumed that the response of microbes to changes in the environment is mediated by a complex combination of shifts in the physiological properties, single-cell activities, or composition of communities: it may occur by means of physiological adjustments of the taxa present in a community or selecting towards more tolerant/better adapted phylotypes. Knowing whether certain factors trigger one, many, or all mechanisms would greatly increase confidence in predictions of future microbial composition and processes. This Research Topic brings together studies that applied the latest molecular techniques for studying microbial composition and functioning and integrated ecological, biogeochemical and/or modeling approaches to provide a comprehensive and mechanistic perspective of the responses of micro-organisms to environmental changes. This Research Topic presents new findings on environmental parameters influencing microbial communities, the type and magnitude of response and differences in the response among microbial groups, and which collectively deepen our current understanding and knowledge of the underlying mechanisms of microbial structural and functional responses to environmental changes and gradients in both aquatic and terrestrial ecosystems. The body of work has, furthermore, identified many challenges and questions that yet remain to be addressed and new perspectives to follow up on.
Author : Savvas Genitsaris
Publisher : MDPI
Page : 104 pages
File Size : 40,9 Mb
Release : 2021-08-31
Category : Science
ISBN : 9783036510521
The book entitled “Biodiversity of Marine Microbes” aims at highlighting the significance of marine microbes as primary producers, their contribution in complex ecological processes and their roles in biogeochemical cycles and ecosystem functioning. The book includes five research papers covering the diversity and composition of marine microbial communities representing all three domains of life in various marine environments, including coastal eutrophic areas, ice waters, and lagoons. One paper examines the diversity and succession of bacterial and archaeal communities from coastal waters in mesocosm experiments. The combination of classical tools with novel technological advances implemented in the methods of the papers offered an opportunity to answer fundamental questions and shed light on the complex and diverse life of marine microbes.
Author : Maurizio Labbate,Justin R. Seymour,Federico Lauro,Mark V. Brown
Publisher : Frontiers Media SA
Page : 250 pages
File Size : 50,6 Mb
Release : 2016-09-06
Category : Microbiology
ISBN : 9782889199396
Aquatic ecosystems are currently experiencing unprecedented levels of impact from human activities including over-exploitation of resources, habitat destruction, pollution and the influence of climate change. The impacts of these activities on the microbial ecology of aquatic environments are only now beginning to be defined. One of the many implications of environmental degradation and climate change is the geographical expansion of disease- causing microbes such as those from the Vibrio genus. Elevating sea surface temperatures correlate with increasing Vibrio numbers and disease in marine animals (e.g. corals) and humans. Contamination of aquatic environments with heavy metals and other pollutants affects microbial ecology with downstream effects on biogeochemical cycles and nutrient turnover. Also of importance is the pollution of aquatic environments with antibiotics, resistance genes and the mobile genetic elements that house resistance genes from human and animal waste. Such contaminated environments act as a source of resistance genes long after an antibiotic has ceased being used in the community. Environments contaminated with mobile genetic elements that are adapted to human commensals and pathogens function to capture new resistance genes for potential reintroduction back into clinical environments. This research topic encompasses these diverse topics and describes the affect(s) of human activity on the microbial ecology and function in aquatic environments and, describes methods of restoration and for modelling disturbances.
Author : Alejandro A. Murillo,Veronica Molina,Chris Harrod,Julio Salcedo-Castro
Publisher : Frontiers Media SA
Page : 179 pages
File Size : 46,9 Mb
Release : 2020-01-16
Category : Electronic
ISBN : 9782889632763
Author : Dilfuza Egamberdieva,Nils-Kåre Birkeland,Hovik Panosyan,Wen-Jun Li
Publisher : Springer
Page : 0 pages
File Size : 42,5 Mb
Release : 2019-01-30
Category : Science
ISBN : 9811343896
This book explores various aspects of thermophilic and halophilic microbes from Eurasian ecosystems, which have proved to offer a unique reservoir of genetic diversity and biological source of extremophiles. It also covers the biotechnological uses of extremophiles, and their potential use in agricultural and industrial applications. The topics addressed include but are not limited to: diversity and microbial ecology, microbe-environment interactions, adaptation and evolution, element cycling and biotechnological applications of thermophiles and halophiles in Eurasian ecosystems. In order to review the progress made in biology and biotechnological applications of thermophiles and halophiles, the book combines review papers and results of original research from various specialists and authorities in the field. It includes several chapters describing the microbial diversity and ecology of geothermal springs distributed among the territory of various Eurasian countries, such as Armenia, Bulgaria, China, Georgia, India, Italy, Pakistan and Turkey. A dedicated chapter discusses selected aspects of thermophilic chemolithotrophic bacteria isolated from mining sites (sulfide ores); detailed descriptions of various thermophile microbes isolated from high-temperature environments and their biotechnological potential are also provided. Subsequent chapters describe the diversity and ecology of halophilic microbes harbored in saline and hypersaline lakes in Iran, Turkey and China; soil and plant microbiomes in saline arid lands of Uzbekistan; microbial diversity in Asian deserts; and the potential applications of thermophilic and halophilic microbes as exopolysaccharide (EPS) producers, focusing on the chemistry and applications of the EPS they produce. We hope that this book will prove valuable as an up-to-date overview of the current state of research on Eurasian extremophiles in general and thermophiles and halophiles in particular. Many questions remain unanswered, and we hope that it will stimulate further studies in this intriguing and promising field.
Author : Jean-Baptiste Ramond,Don A. Cowan
Publisher : Springer Nature
Page : 359 pages
File Size : 49,9 Mb
Release : 2022-07-28
Category : Science
ISBN : 9783030984151
This book covers the wider aspects of the microbiology of hot desert soil ecosystems, compiling disparate information from a range of relevant desert soil microbial fields. The reader learns about microbial ecology of the more dominant and possibly most important desert habitats, detailing the phylogenetic and functional diversity of these different habitats as well as their potential role in desert ecosystem ecology. Particular attention is also given to microbial stress adaptation in hot desert soils. Furthermore, it is the first volume in this particular field to cover modern metagenomics technologies that can be applied to studies of all aspects of desert microbial communities. Additionally, the book explores viruses and viral communities, which are among the least studied (and little understood) components of desert soil microbial communities. Particular attention is also given to the roles of desert microbial communities in biogeochemical cycling of carbon, nitrogen and phosphorus. Through this book the reader discovers how desert microbiology has been at the forefront of Astrobiology and how it may be used conceptually in future terraforming strategies. Desert ecosystems are increasingly coming into focus given the impacts of climate change and desertification trends, making this volume particularly timely. Each of the chapters is authored by leading international researchers and is a must-read for microbial ecologists.
Author : Tulasi Satyanarayana,Bhavdish Narain Johri,Subrata Kumar Das
Publisher : Springer
Page : 635 pages
File Size : 53,8 Mb
Release : 2019-07-17
Category : Science
ISBN : 9789811383151
This book discusses microbial diversity in various habitats and environments, its role in ecosystem maintenance, and its potential applications (e.g. biofertilizers, biocatalysts, antibiotics, other bioactive compounds, exopolysaccharides etc.). The respective chapters, all contributed by renowned experts, offer cutting-edge information in the fields of microbial ecology and biogeography. The book explains the reasons behind the occurrence of various biogeographies and highlights recent tools (e.g. metagenomics) that can aid in biogeography studies by providing information on nucleic acid sequence data, thereby directly identifying microorganisms in various habitats and environments. In turn, the book describes how human intervention results in depletion of biodiversity, and how numerous hotspots are now losing their endemic biodiversity, resulting in the loss of many ecologically important microorganisms. In closing, the book underscores the importance of microbial diversity for sustainable ecosystems.
Author : Carlos Rocha,Henry Bokuniewicz,Clare Robinson,Isaac R. Santos,Hannelore Waska
Publisher : Frontiers Media SA
Page : 289 pages
File Size : 46,9 Mb
Release : 2023-01-19
Category : Science
ISBN : 9782889766260
Over recent decades, it has become widely recognized that water exchange between coastal aquifers and the ocean is an important component of the hydrologic cycle. Twenty years have passed since Willard S. Moore (Moore, 1999) introduced the term ‘subterranean estuary’ (STE) to identify those zones within coastal aquifers where fresh groundwater mixes with surface saltwater. Like open-water estuaries, STEs regulate the transfer of chemicals to the sea under the seashore by submarine groundwater discharge (SGD). This subterranean reactive node in the land-ocean exchange pathway has a physical, even if elusive, structure created by a combination of temporally and spatially variable mass transfer across the groundwater-ocean interface and dynamic flow processes. Many case studies have shown that SGD is a key material link between coastal watersheds and the sea and indeed spatially resolved budgets of radioactive tracers in shelf waters suggest it is the dominant bulk water flux to coastal zones globally. Clearly, STE outflow as SGD is a large source of biogeochemically active solutes to shelf seas, meaning that elemental budgets for these waters have to be revised in order to account for the new input. But how? Recognizing the global prevalence and potential environmental and societal impact of SGD, numerous attempts to quantify chemical inputs into the ocean through this pathway have been published over the past 40 years. However, the role of the STE in modulating chemical fluxes to coastal waters has been generally oversimplified, making a comprehensive analysis of cause and effect relationships between SGD inputs and ecosystem dynamics merely indicative. Unfortunately, we still lack a mechanistic understanding of the processes that control the interaction between allochthonous chemical delivery and autochthonous recycling in the STE that drive compositional variability of SGD flows. Like that applied to open-water estuaries, a general practical and theoretical framework is needed – one that captures the structure and biogeochemistry of STEs and allows more accurate understanding of the chemical composition of SGD outflows, while simultaneously providing for a typological basis that provides solid support for extrapolation of local SGD chemical flux measurements to regional, and from these to global, scale. A comprehensive and critical review of the current state-of-the-art would reveal that progress requires: a) improved variable-density groundwater flow models that provide more accurate predictions and insights into the flow, salt transport, and mixing dynamics in STEs; b) quantitative understanding of the physicochemical and temporal drivers of saline groundwater seepage and composition; and c) better knowledge of the microbial ecology of STEs and links to marine, freshwater, and terrestrial drivers of STE dynamics. Significant research effort has been devoted to addressing these knowledge gaps. It is now time to provide a focused synopsis of these efforts. We propose a combination of cutting-edge original research, systematic, practice and policy reviews, methods and hypothesis and theory articles, tied together by a direction-setting perspective analysis to generate a comprehensive and accurate scientific foundation supporting environmental managers, scientists, and other stakeholders to assess SGD feedbacks on coastal ecosystem functioning and resilience and implement successful coastal management policies.
