Emergent Collective Properties Networks And Information In Biology

Author : J. Ricard
Publisher : Elsevier
Page : 296 pages
File Size : 50,9 Mb
Release : 2006-02-10
Category : Computers
ISBN : 0080462154

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Emergent Collective Properties, Networks and Information in Biology by J. Ricard Pdf

The concept of network as a mathematical description of a set of states, or events, linked according to a certain topology has been developed recently and has led to a novel approach of real world. This approach is no doubt important in the field of biology. In fact biological systems can be considered networks. Thus, for instance, an enzyme-catalysed reaction is a network that links, according to a certain topology, the various states of the protein and of its complexes with the substrates and products of the chemical reaction. Connections between neurons, social relations in animal and human populations are also examples of networks. Hence there is little doubt that the concept of network transgresses the boundaries between traditional scientific disciplines. This book is aimed at discussing in physical terms these exciting new topics on simple protein model lattices, supramolecular protein edifices, multienzyme and gene networks. *Physical and mathematical approach of biological phenomena. *Offers biochemists and biologists the mathematical background required to understand the text. *Associates in the same general formulation, the ideas of communication of a message and organization of a system. *Provides a clear-cut definition and mathematical expression of the concepts of reduction, integration, emergence and complexity that were so far time-honoured and vague

Author : Jacques Ricard
Publisher : Unknown
Page : 277 pages
File Size : 51,9 Mb
Release : 2006
Category : Biochemistry
ISBN : 0444803033

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Emergent Collective Properties, Networks, and Information in Biology by Jacques Ricard Pdf

Author : Jacques Ricard
Publisher : Bentham Science Publishers
Page : 209 pages
File Size : 45,8 Mb
Release : 2014-05-06
Category : Science
ISBN : 9781608058129

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Biological Systems: Complexity and Artificial Life by Jacques Ricard Pdf

The exponential increase in computing power in the late twentieth century has allowed researchers to gather, process and analyze large volumes of information and construct rational paradigms of systems. Life sciences are no exception and computing advances have led to the birth of fields such as functional genomics and bioinformatics and facilitated an expansion of our understanding of biological systems. Biological Systems: Complexity and Artificial Life is an essential primer on systems biology for biologists and researchers having a multidisciplinary background. The volume covers a variety of theoretical models explaining biological processes. The book starts with an introductory chapter on the classical molecular biology paradigm and progresses towards concepts related to enzyme kinetics, non equilibrium dynamics, cellular thermodynamics, molecular motion in cells and more. The book concludes with a philosophical note on the concept of the biological system.

Author : Sungchul Ji
Publisher : Springer Science & Business Media
Page : 751 pages
File Size : 52,9 Mb
Release : 2012-04-05
Category : Science
ISBN : 9781461421511

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Molecular Theory of the Living Cell by Sungchul Ji Pdf

The book presents the first comprehensive molecular theory of the living cell ever published since the cell doctrine was formulated in 1838-1839. It introduces into cell biology over thirty key concepts, principles and laws imported from physics, chemistry, computer science, linguistics, semiotics and philosophy. The author formulates physically, chemically and enzymologically realistic molecular mechanisms to account for basic living processes such as ligand-receptor interactions, enzymic catalysis, force-generating mechanisms in molecular motors, chromatin remodelling, and signal transduction. Possible solutions to basic and practical problems facing contemporary biology and biomedical sciences have been suggested, including pharmacotherapeutics and personalized medicine.

Author : Massimo Pigliucci,Gerd B. Muller
Publisher : MIT Press
Page : 505 pages
File Size : 43,7 Mb
Release : 2010-03-26
Category : Science
ISBN : 9780262513678

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Evolution, the Extended Synthesis by Massimo Pigliucci,Gerd B. Muller Pdf

Prominent evolutionary biologists and philosophers of science survey recent work that expands the core theoretical framework underlying the biological sciences. In the six decades since the publication of Julian Huxley's Evolution: The Modern Synthesis, the spectacular empirical advances in the biological sciences have been accompanied by equally significant developments within the core theoretical framework of the discipline. As a result, evolutionary theory today includes concepts and even entire new fields that were not part of the foundational structure of the Modern Synthesis. In this volume, sixteen leading evolutionary biologists and philosophers of science survey the conceptual changes that have emerged since Huxley's landmark publication, not only in such traditional domains of evolutionary biology as quantitative genetics and paleontology but also in such new fields of research as genomics and EvoDevo. Most of the contributors to Evolution, the Extended Synthesis accept many of the tenets of the classical framework but want to relax some of its assumptions and introduce significant conceptual augmentations of the basic Modern Synthesis structure—just as the architects of the Modern Synthesis themselves expanded and modulated previous versions of Darwinism. This continuing revision of a theoretical edifice the foundations of which were laid in the middle of the nineteenth century—the reexamination of old ideas, proposals of new ones, and the synthesis of the most suitable—shows us how science works, and how scientists have painstakingly built a solid set of explanations for what Darwin called the “grandeur” of life. Contributors John Beatty, Werner Callebaut, Jeremy Draghi, Chrisantha Fernando, Sergey Gavrilets, John C. Gerhart, Eva Jablonka, David Jablonski, Marc W. Kirschner, Marion J. Lamb, Alan C. Love, Gerd B. Müller, Stuart A. Newman, John Odling-Smee, Massimo Pigliucci, Michael Purugganan, Eörs Szathmáry, Günter P. Wagner, David Sloan Wilson, Gregory A. Wray

Author : Perry Marshall
Publisher : BenBella Books, Inc.
Page : 300 pages
File Size : 48,5 Mb
Release : 2015-09-01
Category : Science
ISBN : 9781940363905

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Evolution 2.0 by Perry Marshall Pdf

In the ongoing debate about evolution, science and faith face off. But the truth is both sides are right and wrong. In one corner: Atheists like Richard Dawkins, Daniel Dennett, and Jerry Coyne. They insist evolution happens by blind random accident. Their devout adherence to Neo-Darwinism omits the latest science, glossing over crucial questions and fascinating details. In the other corner: Intelligent Design advocates like William Dembski, Stephen Meyer, and Michael Behe. Many defy scientific consensus, maintaining that evolution is a fraud and rejecting common ancestry outright. There is a third way. Evolution 2.0 proves that, while evolution is not a hoax, neither is it random nor accidental. Changes are targeted, adaptive, and aware. You'll discover: How organisms re-engineer their genetic destiny in real time Amazing systems living things use to re-design themselves Every cell is armed with machinery for editing its own DNA The five amazing tools organisms use to alter their genetics 70 years of scientific discoveries—of which the public has heard virtually nothing! Perry Marshall approached evolution with skepticism for religious reasons. As an engineer, he rejected the concept of organisms randomly evolving. But an epiphany—that DNA is code, much like data in our digital age—sparked a 10-year journey of in-depth research into more than 70 years of under-reported evolutionary science. This led to a new understanding of evolution—an evolution 2.0 that not only furthers technology and medicine, but fuels our sense of wonder at life itself. This book will open your eyes and transform your thinking about evolution and God. You'll gain a deeper appreciation for our place in the universe. You'll see the world around you as you've never seen it before. Evolution 2.0 pinpoints the central mystery of biology, offering a multimillion dollar technology prize at naturalcode.org to the first person who can solve it.

Author : Anonim
Publisher : Elsevier
Page : 584 pages
File Size : 48,7 Mb
Release : 2007-09-17
Category : Science
ISBN : 0080551939

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Calcium: A Matter of Life or Death by Anonim Pdf

Calcium is a versatile carrier of signals regulating many aspects of cellular activity such as fertilization to create a new life and programmed cell death to end it. Calcium homeostasis is strictly controlled by channels, pumps and exchangers functioning as gates for calcium entry and release. Given that calcium is such a versatile messenger the field of calcium signaling is continuously and rapidly expanding. This book reviews the most recent developments in calcium signaling by leading experts in the field. It is a state-of-the-art summary of our present knowledge in this quickly growing field and provides insight into the impressive progress made in many areas of calcium signaling, while reminding us of how much remains to be learned.

Author : J. Zlatanova,S. H. Leuba
Publisher : Gulf Professional Publishing
Page : 546 pages
File Size : 44,5 Mb
Release : 2004
Category : Medical
ISBN : 0444515941

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Chromatin Structure and Dynamics by J. Zlatanova,S. H. Leuba Pdf

Biological processes that replicate, preserve and use the genetic information encoded in DNA must operate in the context of chromatin, a highly organized complex of DNA and proteins. These proteins do not merely package the DNA in the tiny volume of the nucleus, but impart the structure the ability to change according to the requirements of the specific process the DNA is involved in. Moreover, chromatin structure is used by the cell to control the activity of DNA. In this volume the basics of chromatin structure and dynamics are presented by established experts in the field.

Author : E.V. Mielczarek,R.S. Knox,E. Greenbaum
Publisher : Springer Science & Business Media
Page : 450 pages
File Size : 52,5 Mb
Release : 1993-03-31
Category : Science
ISBN : 0883188554

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Biological Physics by E.V. Mielczarek,R.S. Knox,E. Greenbaum Pdf

Market: Students and researchers in biological physics. "Any medical

Author : Jan Walleczek
Publisher : Cambridge University Press
Page : 444 pages
File Size : 46,8 Mb
Release : 2006-04-20
Category : Science
ISBN : 9781139427593

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Self-Organized Biological Dynamics and Nonlinear Control by Jan Walleczek Pdf

The growing impact of nonlinear science on biology and medicine is fundamentally changing our view of living organisms and disease processes. This book introduces the application to biomedicine of a broad range of interdisciplinary concepts from nonlinear dynamics, such as self-organization, complexity, coherence, stochastic resonance, fractals and chaos. It comprises 18 chapters written by leading figures in the field and covers experimental and theoretical research, as well as the emerging technological possibilities such as nonlinear control techniques for treating pathological biodynamics, including heart arrhythmias and epilepsy. This book will attract the interest of professionals and students from a wide range of disciplines, including physicists, chemists, biologists, sensory physiologists and medical researchers such as cardiologists, neurologists and biomedical engineers.

Author : Grady Hanrahan
Publisher : CRC Press
Page : 214 pages
File Size : 49,6 Mb
Release : 2011-01-18
Category : Mathematics
ISBN : 1439812594

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Artificial Neural Networks in Biological and Environmental Analysis by Grady Hanrahan Pdf

Originating from models of biological neural systems, artificial neural networks (ANN) are the cornerstones of artificial intelligence research. Catalyzed by the upsurge in computational power and availability, and made widely accessible with the co-evolution of software, algorithms, and methodologies, artificial neural networks have had a profound impact in the elucidation of complex biological, chemical, and environmental processes. Artificial Neural Networks in Biological and Environmental Analysis provides an in-depth and timely perspective on the fundamental, technological, and applied aspects of computational neural networks. Presenting the basic principles of neural networks together with applications in the field, the book stimulates communication and partnership among scientists in fields as diverse as biology, chemistry, mathematics, medicine, and environmental science. This interdisciplinary discourse is essential not only for the success of independent and collaborative research and teaching programs, but also for the continued interest in the use of neural network tools in scientific inquiry. The book covers: A brief history of computational neural network models in relation to brain function Neural network operations, including neuron connectivity and layer arrangement Basic building blocks of model design, selection, and application from a statistical perspective Neurofuzzy systems, neuro-genetic systems, and neuro-fuzzy-genetic systems Function of neural networks in the study of complex natural processes Scientists deal with very complicated systems, much of the inner workings of which are frequently unknown to researchers. Using only simple, linear mathematical methods, information that is needed to truly understand natural systems may be lost. The development of new algorithms to model such processes is needed, and ANNs can play a major role. Balancing basic principles and diverse applications, this text introduces newcomers to the field and reviews recent developments of interest to active neural network practitioners.

Author : Stuart A Kauffman
Publisher : Basic Books
Page : 320 pages
File Size : 43,7 Mb
Release : 2008-01-10
Category : Science
ISBN : 9780465012404

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Reinventing the Sacred by Stuart A Kauffman Pdf

Consider the woven integrated complexity of a living cell after 3.8 billion years of evolution. Is it more awe-inspiring to suppose that a transcendent God fashioned the cell, or to consider that the living organism was created by the evolving biosphere? As the eminent complexity theorist Stuart Kauffman explains in this ambitious and groundbreaking new book, people who do not believe in God have largely lost their sense of the sacred and the deep human legitimacy of our inherited spirituality. For those who believe in a Creator God, no science will ever disprove that belief. In Reinventing the Sacred, Kauffman argues that the science of complexity provides a way to move beyond reductionist science to something new: a unified culture where we see God in the creativity of the universe, biosphere, and humanity. Kauffman explains that the ceaseless natural creativity of the world can be a profound source of meaning, wonder, and further grounding of our place in the universe. His theory carries with it a new ethic for an emerging civilization and a reinterpretation of the divine. He asserts that we are impelled by the imperative of life itself to live with faith and courage-and the fact that we do so is indeed sublime. Reinventing the Sacred will change the way we all think about the evolution of humanity, the universe, faith, and reason.

Author : Mariano Bizzarri
Publisher : Springer Nature
Page : 261 pages
File Size : 53,7 Mb
Release : 2024-01-08
Category : Science
ISBN : 9781071635773

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Systems Biology by Mariano Bizzarri Pdf

This second edition volume expands on the previous edition with discussions of the latest advancements and methods used by scientists to study systems biology. The chapters in this book are organized into four parts. Part One looks at models in systems biology and parameters identification such as short peptide analysis, metastasis models, and metabolomics. Part Two covers computational methods in the study of organisms, and cancer non-linear dynamics. Part Three discusses critical transition states across Waddington’s like landscapes such as understanding cell differentiation through single-cell approaches and modeling mammary organogenesis from biological first principles. Part Four talks about specific fields of investigation including inborn errors of metabolism, system biology approach in epithelial-mesenchymal transition, and an approach to understanding how COVID-19 spreads in the population. Written in the highly successful Methods in Molecular Biology series format, chapters include introductions to their respective topics, lists of the necessary materials and reagents, step-by-step, readily reproducible laboratory protocols, and tips on troubleshooting and avoiding known pitfalls. Cutting-edge and comprehensive, Systems Biology, Second Edition is a valuable tool for any researcher looking to learn more about this important and developing field.

Author : Arthur James Wells
Publisher : Unknown
Page : 1884 pages
File Size : 42,6 Mb
Release : 2006
Category : Bibliography, National
ISBN : UOM:39015066099196

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The British National Bibliography by Arthur James Wells Pdf

Author : H. Malmgren,M. Borga,L. Niklasson
Publisher : Springer Science & Business Media
Page : 339 pages
File Size : 42,7 Mb
Release : 2012-12-06
Category : Computers
ISBN : 9781447105138

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Artificial Neural Networks in Medicine and Biology by H. Malmgren,M. Borga,L. Niklasson Pdf

This book contains the proceedings of the conference ANNIMAB-l, held 13-16 May 2000 in Goteborg, Sweden. The conference was organized by the Society for Artificial Neural Networks in Medicine and Biology (ANNIMAB-S), which was established to promote research within a new and genuinely cross-disciplinary field. Forty-two contributions were accepted for presentation; in addition to these, S invited papers are also included. Research within medicine and biology has often been characterised by application of statistical methods for evaluating domain specific data. The growing interest in Artificial Neural Networks has not only introduced new methods for data analysis, but also opened up for development of new models of biological and ecological systems. The ANNIMAB-l conference is focusing on some of the many uses of artificial neural networks with relevance for medicine and biology, specifically: • Medical applications of artificial neural networks: for better diagnoses and outcome predictions from clinical and laboratory data, in the processing of ECG and EEG signals, in medical image analysis, etc. More than half of the contributions address such clinically oriented issues. • Uses of ANNs in biology outside clinical medicine: for example, in models of ecology and evolution, for data analysis in molecular biology, and (of course) in models of animal and human nervous systems and their capabilities. • Theoretical aspects: recent developments in learning algorithms, ANNs in relation to expert systems and to traditional statistical procedures, hybrid systems and integrative approaches.