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Introduction to Graphical Modelling by David Edwards Pdf
A useful introduction to this topic for both students and researchers, with an emphasis on applications and practicalities rather than on a formal development. It is based on the popular software package for graphical modelling, MIM, freely available for downloading from the Internet. Following a description of some of the basic ideas of graphical modelling, subsequent chapters describe particular families of models, including log-linear models, Gaussian models, and models for mixed discrete and continuous variables. Further chapters cover hypothesis testing and model selection. Chapters 7 and 8 are new to this second edition and describe the use of directed, chain, and other graphs, complete with a summary of recent work on causal inference.
Graphical Models with R by Søren Højsgaard,David Edwards,Steffen Lauritzen Pdf
Graphical models in their modern form have been around since the late 1970s and appear today in many areas of the sciences. Along with the ongoing developments of graphical models, a number of different graphical modeling software programs have been written over the years. In recent years many of these software developments have taken place within the R community, either in the form of new packages or by providing an R interface to existing software. This book attempts to give the reader a gentle introduction to graphical modeling using R and the main features of some of these packages. In addition, the book provides examples of how more advanced aspects of graphical modeling can be represented and handled within R. Topics covered in the seven chapters include graphical models for contingency tables, Gaussian and mixed graphical models, Bayesian networks and modeling high dimensional data.
Probabilistic Graphical Models by Daphne Koller,Nir Friedman Pdf
A general framework for constructing and using probabilistic models of complex systems that would enable a computer to use available information for making decisions. Most tasks require a person or an automated system to reason—to reach conclusions based on available information. The framework of probabilistic graphical models, presented in this book, provides a general approach for this task. The approach is model-based, allowing interpretable models to be constructed and then manipulated by reasoning algorithms. These models can also be learned automatically from data, allowing the approach to be used in cases where manually constructing a model is difficult or even impossible. Because uncertainty is an inescapable aspect of most real-world applications, the book focuses on probabilistic models, which make the uncertainty explicit and provide models that are more faithful to reality. Probabilistic Graphical Models discusses a variety of models, spanning Bayesian networks, undirected Markov networks, discrete and continuous models, and extensions to deal with dynamical systems and relational data. For each class of models, the text describes the three fundamental cornerstones: representation, inference, and learning, presenting both basic concepts and advanced techniques. Finally, the book considers the use of the proposed framework for causal reasoning and decision making under uncertainty. The main text in each chapter provides the detailed technical development of the key ideas. Most chapters also include boxes with additional material: skill boxes, which describe techniques; case study boxes, which discuss empirical cases related to the approach described in the text, including applications in computer vision, robotics, natural language understanding, and computational biology; and concept boxes, which present significant concepts drawn from the material in the chapter. Instructors (and readers) can group chapters in various combinations, from core topics to more technically advanced material, to suit their particular needs.
In the past decade, a number of different research communities within the computational sciences have studied learning in networks, starting from a number of different points of view. There has been substantial progress in these different communities and surprising convergence has developed between the formalisms. The awareness of this convergence and the growing interest of researchers in understanding the essential unity of the subject underlies the current volume. Two research communities which have used graphical or network formalisms to particular advantage are the belief network community and the neural network community. Belief networks arose within computer science and statistics and were developed with an emphasis on prior knowledge and exact probabilistic calculations. Neural networks arose within electrical engineering, physics and neuroscience and have emphasised pattern recognition and systems modelling problems. This volume draws together researchers from these two communities and presents both kinds of networks as instances of a general unified graphical formalism. The book focuses on probabilistic methods for learning and inference in graphical models, algorithm analysis and design, theory and applications. Exact methods, sampling methods and variational methods are discussed in detail. Audience: A wide cross-section of computationally oriented researchers, including computer scientists, statisticians, electrical engineers, physicists and neuroscientists.
Handbook of Graphical Models by Marloes Maathuis,Mathias Drton,Steffen Lauritzen,Martin Wainwright Pdf
A graphical model is a statistical model that is represented by a graph. The factorization properties underlying graphical models facilitate tractable computation with multivariate distributions, making the models a valuable tool with a plethora of applications. Furthermore, directed graphical models allow intuitive causal interpretations and have become a cornerstone for causal inference. While there exist a number of excellent books on graphical models, the field has grown so much that individual authors can hardly cover its entire scope. Moreover, the field is interdisciplinary by nature. Through chapters by leading researchers from different areas, this handbook provides a broad and accessible overview of the state of the art. Key features: * Contributions by leading researchers from a range of disciplines * Structured in five parts, covering foundations, computational aspects, statistical inference, causal inference, and applications * Balanced coverage of concepts, theory, methods, examples, and applications * Chapters can be read mostly independently, while cross-references highlight connections The handbook is targeted at a wide audience, including graduate students, applied researchers, and experts in graphical models.
Graphical Models, Exponential Families, and Variational Inference by Martin J. Wainwright,Michael Irwin Jordan Pdf
The core of this paper is a general set of variational principles for the problems of computing marginal probabilities and modes, applicable to multivariate statistical models in the exponential family.
Graphical Models in Applied Multivariate Statistics by Joe Whittaker Pdf
The Wiley Paperback Series makes valuable content more accessible to a new generation of statisticians, mathematicians and scientists. Graphical models--a subset of log-linear models--reveal the interrelationships between multiple variables and features of the underlying conditional independence. This introduction to the use of graphical models in the description and modeling of multivariate systems covers conditional independence, several types of independence graphs, Gaussian models, issues in model selection, regression and decomposition. Many numerical examples and exercises with solutions are included. This book is aimed at students who require a course on applied multivariate statistics unified by the concept of conditional independence and researchers concerned with applying graphical modelling techniques.
Author : William L. William L. Hamilton Publisher : Springer Nature Page : 141 pages File Size : 44,5 Mb Release : 2022-06-01 Category : Computers ISBN : 9783031015885
Graph Representation Learning by William L. William L. Hamilton Pdf
Graph-structured data is ubiquitous throughout the natural and social sciences, from telecommunication networks to quantum chemistry. Building relational inductive biases into deep learning architectures is crucial for creating systems that can learn, reason, and generalize from this kind of data. Recent years have seen a surge in research on graph representation learning, including techniques for deep graph embeddings, generalizations of convolutional neural networks to graph-structured data, and neural message-passing approaches inspired by belief propagation. These advances in graph representation learning have led to new state-of-the-art results in numerous domains, including chemical synthesis, 3D vision, recommender systems, question answering, and social network analysis. This book provides a synthesis and overview of graph representation learning. It begins with a discussion of the goals of graph representation learning as well as key methodological foundations in graph theory and network analysis. Following this, the book introduces and reviews methods for learning node embeddings, including random-walk-based methods and applications to knowledge graphs. It then provides a technical synthesis and introduction to the highly successful graph neural network (GNN) formalism, which has become a dominant and fast-growing paradigm for deep learning with graph data. The book concludes with a synthesis of recent advancements in deep generative models for graphs—a nascent but quickly growing subset of graph representation learning.
Probabilistic Graphical Models by Luis Enrique Sucar Pdf
This fully updated new edition of a uniquely accessible textbook/reference provides a general introduction to probabilistic graphical models (PGMs) from an engineering perspective. It features new material on partially observable Markov decision processes, causal graphical models, causal discovery and deep learning, as well as an even greater number of exercises; it also incorporates a software library for several graphical models in Python. The book covers the fundamentals for each of the main classes of PGMs, including representation, inference and learning principles, and reviews real-world applications for each type of model. These applications are drawn from a broad range of disciplines, highlighting the many uses of Bayesian classifiers, hidden Markov models, Bayesian networks, dynamic and temporal Bayesian networks, Markov random fields, influence diagrams, and Markov decision processes. Topics and features: Presents a unified framework encompassing all of the main classes of PGMs Explores the fundamental aspects of representation, inference and learning for each technique Examines new material on partially observable Markov decision processes, and graphical models Includes a new chapter introducing deep neural networks and their relation with probabilistic graphical models Covers multidimensional Bayesian classifiers, relational graphical models, and causal models Provides substantial chapter-ending exercises, suggestions for further reading, and ideas for research or programming projects Describes classifiers such as Gaussian Naive Bayes, Circular Chain Classifiers, and Hierarchical Classifiers with Bayesian Networks Outlines the practical application of the different techniques Suggests possible course outlines for instructors This classroom-tested work is suitable as a textbook for an advanced undergraduate or a graduate course in probabilistic graphical models for students of computer science, engineering, and physics. Professionals wishing to apply probabilistic graphical models in their own field, or interested in the basis of these techniques, will also find the book to be an invaluable reference. Dr. Luis Enrique Sucar is a Senior Research Scientist at the National Institute for Astrophysics, Optics and Electronics (INAOE), Puebla, Mexico. He received the National Science Prize en 2016.
The idea of modelling systems using graph theory has its origin in several scientific areas: in statistical physics (the study of large particle systems), in genetics (studying inheritable properties of natural species), and in interactions in contingency tables. The use of graphical models in statistics has increased considerably over recent years and the theory has been greatly developed and extended. This book provides the first comprehensive and authoritative account of the theory of graphical models and is written by a leading expert in the field. It contains the fundamental graph theory required and a thorough study of Markov properties associated with various type of graphs. The statistical theory of log-linear and graphical models for contingency tables, covariance selection models, and graphical models with mixed discrete-continous variables in developed detail. Special topics, such as the application of graphical models to probabilistic expert systems, are described briefly, and appendices give details of the multivarate normal distribution and of the theory of regular exponential families. The author has recently been awarded the RSS Guy Medal in Silver 1996 for his innovative contributions to statistical theory and practice, and especially for his work on graphical models.
Graphical Models by Christian Borgelt,Matthias Steinbrecher,Rudolf R Kruse Pdf
Graphical models are of increasing importance in applied statistics, and in particular in data mining. Providing a self-contained introduction and overview to learning relational, probabilistic, and possibilistic networks from data, this second edition of Graphical Models is thoroughly updated to include the latest research in this burgeoning field, including a new chapter on visualization. The text provides graduate students, and researchers with all the necessary background material, including modelling under uncertainty, decomposition of distributions, graphical representation of distributions, and applications relating to graphical models and problems for further research.
GRMS or Graphical Representation of Model Spaces by Wlodzislaw Duch Pdf
The purpose of these notes is to give some simple tools and pictures to physicists and ' chemists working on the many-body problem. Abstract thinking and seeing have much in common - we say "I see" meaning "I understand" , for example. Most of us prefer to have a picture of an abstract object. The remarkable popularity of the Feynman diagrams, and other diagrammatic approaches to many-body problem derived thereof, may be partially due to this preference. Yet, paradoxically, the concept of a linear space, as fundamental to quantum physics as it is, has never been cast in a graphical form. We know that is a high-order contribution to a two-particle scattering process (this one invented by Cvitanovic(1984)) corresponding to a complicated matrix element. The lines in such diagrams are labeled by indices of single-particle states. When things get complicated at this level it should be good to take a global view from the perspective of the whole many-particle space. But how to visualize the space of all many-particle states ? Methods of such visualization or graphical representation of the ,spaces of interest to physicists and chemists are the main topic of this work.
Graphical Models by Christian Borgelt,Rudolf Kruse Pdf
The concept of modelling using graph theory has its origin in several scientific areas, notably statistics, physics, genetics, and engineering. The use of graphical models in applied statistics has increased considerably over recent years and the theory has been greatly developed and extended. This book provides a self-contained introduction to the learning of graphical models from data, and is the first to include detailed coverage of possibilistic networks - a relatively new reasoning tool that allows the user to infer results from problems with imprecise data. One major advantage of graphical modelling is that specialised techniques that have been developed in one field can be transferred into others easily. The methods described here are applied in a number of industries, including a recent quality testing programme at a major car manufacturer. * Provides a self-contained introduction to learning relational, probabilistic and possibilistic networks from data * Each concept is carefully explained and illustrated by examples * Contains all necessary background, including modeling under uncertainty, decomposition of distributions, and graphical representation of decompositions * Features applications of learning graphical models from data, and problems for further research * Includes a comprehensive bibliography An essential reference for graduate students of graphical modelling, applied statistics, computer science and engineering, as well as researchers and practitioners who use graphical models in their work.
Handbook of Statistical Systems Biology by Michael Stumpf,David J. Balding,Mark Girolami Pdf
Systems Biology is now entering a mature phase in which the key issues are characterising uncertainty and stochastic effects in mathematical models of biological systems. The area is moving towards a full statistical analysis and probabilistic reasoning over the inferences that can be made from mathematical models. This handbook presents a comprehensive guide to the discipline for practitioners and educators, in providing a full and detailed treatment of these important and emerging subjects. Leading experts in systems biology and statistics have come together to provide insight in to the major ideas in the field, and in particular methods of specifying and fitting models, and estimating the unknown parameters. This book: Provides a comprehensive account of inference techniques in systems biology. Introduces classical and Bayesian statistical methods for complex systems. Explores networks and graphical modeling as well as a wide range of statistical models for dynamical systems. Discusses various applications for statistical systems biology, such as gene regulation and signal transduction. Features statistical data analysis on numerous technologies, including metabolic and transcriptomic technologies. Presents an in-depth presentation of reverse engineering approaches. Provides colour illustrations to explain key concepts. This handbook will be a key resource for researchers practising systems biology, and those requiring a comprehensive overview of this important field.
