Large Scale Graph Analysis System Algorithm And Optimization
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Large-scale Graph Analysis: System, Algorithm and Optimization by Yingxia Shao,Bin Cui,Lei Chen Pdf
This book introduces readers to a workload-aware methodology for large-scale graph algorithm optimization in graph-computing systems, and proposes several optimization techniques that can enable these systems to handle advanced graph algorithms efficiently. More concretely, it proposes a workload-aware cost model to guide the development of high-performance algorithms. On the basis of the cost model, the book subsequently presents a system-level optimization resulting in a partition-aware graph-computing engine, PAGE. In addition, it presents three efficient and scalable advanced graph algorithms – the subgraph enumeration, cohesive subgraph detection, and graph extraction algorithms. This book offers a valuable reference guide for junior researchers, covering the latest advances in large-scale graph analysis; and for senior researchers, sharing state-of-the-art solutions based on advanced graph algorithms. In addition, all readers will find a workload-aware methodology for designing efficient large-scale graph algorithms.
Large-Scale Graph Processing Using Apache Giraph by Sherif Sakr,Faisal Moeen Orakzai,Ibrahim Abdelaziz,Zuhair Khayyat Pdf
This book takes its reader on a journey through Apache Giraph, a popular distributed graph processing platform designed to bring the power of big data processing to graph data. Designed as a step-by-step self-study guide for everyone interested in large-scale graph processing, it describes the fundamental abstractions of the system, its programming models and various techniques for using the system to process graph data at scale, including the implementation of several popular and advanced graph analytics algorithms. The book is organized as follows: Chapter 1 starts by providing a general background of the big data phenomenon and a general introduction to the Apache Giraph system, its abstraction, programming model and design architecture. Next, chapter 2 focuses on Giraph as a platform and how to use it. Based on a sample job, even more advanced topics like monitoring the Giraph application lifecycle and different methods for monitoring Giraph jobs are explained. Chapter 3 then provides an introduction to Giraph programming, introduces the basic Giraph graph model and explains how to write Giraph programs. In turn, Chapter 4 discusses in detail the implementation of some popular graph algorithms including PageRank, connected components, shortest paths and triangle closing. Chapter 5 focuses on advanced Giraph programming, discussing common Giraph algorithmic optimizations, tunable Giraph configurations that determine the system’s utilization of the underlying resources, and how to write a custom graph input and output format. Lastly, chapter 6 highlights two systems that have been introduced to tackle the challenge of large scale graph processing, GraphX and GraphLab, and explains the main commonalities and differences between these systems and Apache Giraph. This book serves as an essential reference guide for students, researchers and practitioners in the domain of large scale graph processing. It offers step-by-step guidance, with several code examples and the complete source code available in the related github repository. Students will find a comprehensive introduction to and hands-on practice with tackling large scale graph processing problems using the Apache Giraph system, while researchers will discover thorough coverage of the emerging and ongoing advancements in big graph processing systems.
Combinatorial Optimization and Graph Algorithms by Takuro Fukunaga,Ken-ichi Kawarabayashi Pdf
Covering network designs, discrete convex analysis, facility location and clustering problems, matching games, and parameterized complexity, this book discusses theoretical aspects of combinatorial optimization and graph algorithms. Contributions are by renowned researchers who attended NII Shonan meetings on this essential topic. The collection contained here provides readers with the outcome of the authors’ research and productive meetings on this dynamic area, ranging from computer science and mathematics to operations research. Networks are ubiquitous in today's world: the Web, online social networks, and search-and-query click logs can lead to a graph that consists of vertices and edges. Such networks are growing so fast that it is essential to design algorithms to work for these large networks. Graph algorithms comprise an area in computer science that works to design efficient algorithms for networks. Here one can work on theoretical or practical problems where implementation of an algorithm for large networks is needed. In two of the chapters, recent results in graph matching games and fixed parameter tractability are surveyed. Combinatorial optimization is an intersection of operations research and mathematics, especially discrete mathematics, which deals with new questions and new problems, attempting to find an optimum object from a finite set of objects. Most problems in combinatorial optimization are not tractable (i.e., NP-hard). Therefore it is necessary to design an approximation algorithm for them. To tackle these problems requires the development and combination of ideas and techniques from diverse mathematical areas including complexity theory, algorithm theory, and matroids as well as graph theory, combinatorics, convex and nonlinear optimization, and discrete and convex geometry. Overall, the book presents recent progress in facility location, network design, and discrete convex analysis.
Practical Graph Analytics with Apache Giraph by Roman Shaposhnik,Claudio Martella,Dionysios Logothetis Pdf
Practical Graph Analytics with Apache Giraph helps you build data mining and machine learning applications using the Apache Foundation’s Giraph framework for graph processing. This is the same framework as used by Facebook, Google, and other social media analytics operations to derive business value from vast amounts of interconnected data points. Graphs arise in a wealth of data scenarios and describe the connections that are naturally formed in both digital and real worlds. Examples of such connections abound in online social networks such as Facebook and Twitter, among users who rate movies from services like Netflix and Amazon Prime, and are useful even in the context of biological networks for scientific research. Whether in the context of business or science, viewing data as connected adds value by increasing the amount of information available to be drawn from that data and put to use in generating new revenue or scientific opportunities. Apache Giraph offers a simple yet flexible programming model targeted to graph algorithms and designed to scale easily to accommodate massive amounts of data. Originally developed at Yahoo!, Giraph is now a top top-level project at the Apache Foundation, and it enlists contributors from companies such as Facebook, LinkedIn, and Twitter. Practical Graph Analytics with Apache Giraph brings the power of Apache Giraph to you, showing how to harness the power of graph processing for your own data by building sophisticated graph analytics applications using the very same framework that is relied upon by some of the largest players in the industry today.
Distributed Graph Analytics by Unnikrishnan Cheramangalath,Rupesh Nasre,Y. N. Srikant Pdf
This book brings together two important trends: graph algorithms and high-performance computing. Efficient and scalable execution of graph processing applications in data or network analysis requires innovations at multiple levels: algorithms, associated data structures, their implementation and tuning to a particular hardware. Further, programming languages and the associated compilers play a crucial role when it comes to automating efficient code generation for various architectures. This book discusses the essentials of all these aspects. The book is divided into three parts: programming, languages, and their compilation. The first part examines the manual parallelization of graph algorithms, revealing various parallelization patterns encountered, especially when dealing with graphs. The second part uses these patterns to provide language constructs that allow a graph algorithm to be specified. Programmers can work with these language constructs without worrying about their implementation, which is the focus of the third part. Implementation is handled by a compiler, which can specialize code generation for a backend device. The book also includes suggestive results on different platforms, which illustrate and justify the theory and practice covered. Together, the three parts provide the essential ingredients for creating a high-performance graph application. The book ends with a section on future directions, which offers several pointers to promising topics for future research. This book is intended for new researchers as well as graduate and advanced undergraduate students. Most of the chapters can be read independently by those familiar with the basics of parallel programming and graph algorithms. However, to make the material more accessible, the book includes a brief background on elementary graph algorithms, parallel computing and GPUs. Moreover it presents a case study using Falcon, a domain-specific language for graph algorithms, to illustrate the concepts.
Graph Algorithms in the Language of Linear Algebra by Jeremy Kepner,John Gilbert Pdf
The current exponential growth in graph data has forced a shift to parallel computing for executing graph algorithms. Implementing parallel graph algorithms and achieving good parallel performance have proven difficult. This book addresses these challenges by exploiting the well-known duality between a canonical representation of graphs as abstract collections of vertices and edges and a sparse adjacency matrix representation. This linear algebraic approach is widely accessible to scientists and engineers who may not be formally trained in computer science. The authors show how to leverage existing parallel matrix computation techniques and the large amount of software infrastructure that exists for these computations to implement efficient and scalable parallel graph algorithms. The benefits of this approach are reduced algorithmic complexity, ease of implementation, and improved performance.
Optimization Problems in Graph Theory by Boris Goldengorin Pdf
This book presents open optimization problems in graph theory and networks. Each chapter reflects developments in theory and applications based on Gregory Gutin’s fundamental contributions to advanced methods and techniques in combinatorial optimization. Researchers, students, and engineers in computer science, big data, applied mathematics, operations research, algorithm design, artificial intelligence, software engineering, data analysis, industrial and systems engineering will benefit from the state-of-the-art results presented in modern graph theory and its applications to the design of efficient algorithms for optimization problems. Topics covered in this work include: · Algorithmic aspects of problems with disjoint cycles in graphs · Graphs where maximal cliques and stable sets intersect · The maximum independent set problem with special classes · A general technique for heuristic algorithms for optimization problems · The network design problem with cut constraints · Algorithms for computing the frustration index of a signed graph · A heuristic approach for studying the patrol problem on a graph · Minimum possible sum and product of the proper connection number · Structural and algorithmic results on branchings in digraphs · Improved upper bounds for Korkel--Ghosh benchmark SPLP instances
Optimization in the Real World by Katsuki Fujisawa,Yuji Shinano,Hayato Waki Pdf
This book clearly shows the importance, usefulness, and powerfulness of current optimization technologies, in particular, mixed-integer programming and its remarkable applications. It is intended to be the definitive study of state-of-the-art optimization technologies for students, academic researchers, and non-professionals in industry. The chapters of this book are based on a collection of selected and extended papers from the “IMI Workshop on Optimization in the Real World” held in October 2014 in Japan.
Advanced Software Technologies for Post-Peta Scale Computing by Mitsuhisa Sato Pdf
Covering research topics from system software such as programming languages, compilers, runtime systems, operating systems, communication middleware, and large-scale file systems, as well as application development support software and big-data processing software, this book presents cutting-edge software technologies for extreme scale computing. The findings presented here will provide researchers in these fields with important insights for the further development of exascale computing technologies. This book grew out of the post-peta CREST research project funded by the Japan Science and Technology Agency, the goal of which was to establish software technologies for exploring extreme performance computing beyond petascale computing. The respective were contributed by 14 research teams involved in the project. In addition to advanced technologies for large-scale numerical computation, the project addressed the technologies required for big data and graph processing, the complexity of memory hierarchy, and the power problem. Mapping the direction of future high-performance computing was also a central priority.
Computational Graph Theory by Gottfried Tinhofer,Rudolf Albrecht,Ernst Mayr,Hartmut Noltemeier,Maciej M. Syslo Pdf
One ofthe most important aspects in research fields where mathematics is "applied is the construction of a formal model of a real system. As for structural relations, graphs have turned out to provide the most appropriate tool for setting up the mathematical model. This is certainly one of the reasons for the rapid expansion in graph theory during the last decades. Furthermore, in recent years it also became clear that the two disciplines of graph theory and computer science have very much in common, and that each one has been capable of assisting significantly in the development of the other. On one hand, graph theorists have found that many of their problems can be solved by the use of com puting techniques, and on the other hand, computer scientists have realized that many of their concepts, with which they have to deal, may be conveniently expressed in the lan guage of graph theory, and that standard results in graph theory are often very relevant to the solution of problems concerning them. As a consequence, a tremendous number of publications has appeared, dealing with graphtheoretical problems from a computational point of view or treating computational problems using graph theoretical concepts.
Mathematical Software – ICMS 2016 by Gert-Martin Greuel,Thorsten Koch,Peter Paule,Andrew Sommese Pdf
This book constitutes the proceedings of the 5th International Conference on Mathematical Software, ICMS 2015, held in Berlin, Germany, in July 2016. The 68 papers included in this volume were carefully reviewed and selected from numerous submissions. The papers are organized in topical sections named: univalent foundations and proof assistants; software for mathematical reasoning and applications; algebraic and toric geometry; algebraic geometry in applications; software of polynomial systems; software for numerically solving polynomial systems; high-precision arithmetic, effective analysis, and special functions; mathematical optimization; interactive operation to scientific artwork and mathematical reasoning; information services for mathematics: software, services, models, and data; semDML: towards a semantic layer of a world digital mathematical library; miscellanea.
Creativity in Load-Balance Schemes for Multi/Many-Core Heterogeneous Graph Computing: Emerging Research and Opportunities by Garcia-Robledo, Alberto,Diaz-Perez, Arturo,Morales-Luna, Guillermo Pdf
Recent years have witnessed the rise of analysis of real-world massive and complex phenomena in graphs; to efficiently solve these large-scale graph problems, it is necessary to exploit high performance computing (HPC), which accelerates the innovation process for discovery and invention of new products and procedures in network science. Creativity in Load-Balance Schemes for Multi/Many-Core Heterogeneous Graph Computing: Emerging Research and Opportunities is a critical scholarly resource that examines trends, challenges, and collaborative processes in emerging fields within complex network analysis. Featuring coverage on a broad range of topics such as high-performance computing, big data, network science, and accelerated network traversal, this book is geared towards data analysts, researchers, students in information communication technology (ICT), program developers, and academics.
Graph Machine Learning by Claudio Stamile,Aldo Marzullo,Enrico Deusebio Pdf
Build machine learning algorithms using graph data and efficiently exploit topological information within your models Key Features Implement machine learning techniques and algorithms in graph data Identify the relationship between nodes in order to make better business decisions Apply graph-based machine learning methods to solve real-life problems Book Description Graph Machine Learning will introduce you to a set of tools used for processing network data and leveraging the power of the relation between entities that can be used for predictive, modeling, and analytics tasks. The first chapters will introduce you to graph theory and graph machine learning, as well as the scope of their potential use. You'll then learn all you need to know about the main machine learning models for graph representation learning: their purpose, how they work, and how they can be implemented in a wide range of supervised and unsupervised learning applications. You'll build a complete machine learning pipeline, including data processing, model training, and prediction in order to exploit the full potential of graph data. After covering the basics, you'll be taken through real-world scenarios such as extracting data from social networks, text analytics, and natural language processing (NLP) using graphs and financial transaction systems on graphs. You'll also learn how to build and scale out data-driven applications for graph analytics to store, query, and process network information, and explore the latest trends on graphs. By the end of this machine learning book, you will have learned essential concepts of graph theory and all the algorithms and techniques used to build successful machine learning applications. What you will learn Write Python scripts to extract features from graphs Distinguish between the main graph representation learning techniques Learn how to extract data from social networks, financial transaction systems, for text analysis, and more Implement the main unsupervised and supervised graph embedding techniques Get to grips with shallow embedding methods, graph neural networks, graph regularization methods, and more Deploy and scale out your application seamlessly Who this book is for This book is for data scientists, data analysts, graph analysts, and graph professionals who want to leverage the information embedded in the connections and relations between data points to boost their analysis and model performance using machine learning. It will also be useful for machine learning developers or anyone who wants to build ML-driven graph databases. A beginner-level understanding of graph databases and graph data is required, alongside a solid understanding of ML basics. You'll also need intermediate-level Python programming knowledge to get started with this book.
Graph Algorithms and Applications 3 by Giuseppe Liotta,Roberto Tamassia,Ioannis G. Tollis Pdf
This book contains Volume 6 of the Journal of Graph Algorithms and Applications (JGAA) . JGAA is a peer-reviewed scientific journal devoted to the publication of high-quality research papers on the analysis, design, implementation, and applications of graph algorithms. Areas of interest include computational biology, computational geometry, computer graphics, computer-aided design, computer and interconnection networks, constraint systems, databases, graph drawing, graph embedding and layout, knowledge representation, multimedia, software engineering, telecommunications networks, user interfaces and visualization, and VLSI circuit design. Graph Algorithms and Applications 3 presents contributions from prominent authors and includes selected papers from the Symposium on Graph Drawing (1999 and 2000). All papers in the book have extensive diagrams and offer a unique treatment of graph algorithms focusing on the important applications. Contents: Triangle-Free Planar Graphs and Segment Intersection Graphs (N de Castro et al.); Traversing Directed Eulerian Mazes (S Bhatt et al.); A Fast Multi-Scale Method for Drawing Large Graphs (D Harel & Y Koren); GRIP: Graph Drawing with Intelligent Placement (P Gajer & S G Kobourov); Graph Drawing in Motion (C Friedrich & P Eades); A 6-Regular Torus Graph Family with Applications to Cellular and Interconnection Networks (M Iridon & D W Matula); and other papers. Readership: Researchers and practitioners in theoretical computer science, computer engineering, and combinatorics and graph theory.
Apache Spark Graph Processing by Rindra Ramamonjison Pdf
Build, process and analyze large-scale graph data effectively with Spark About This Book Find solutions for every stage of data processing from loading and transforming graph data to Improve the scalability of your graphs with a variety of real-world applications with complete Scala code. A concise guide to processing large-scale networks with Apache Spark. Who This Book Is For This book is for data scientists and big data developers who want to learn the processing and analyzing graph datasets at scale. Basic programming experience with Scala is assumed. Basic knowledge of Spark is assumed. What You Will Learn Write, build and deploy Spark applications with the Scala Build Tool. Build and analyze large-scale network datasets Analyze and transform graphs using RDD and graph-specific operations Implement new custom graph operations tailored to specific needs. Develop iterative and efficient graph algorithms using message aggregation and Pregel abstraction Extract subgraphs and use it to discover common clusters Analyze graph data and solve various data science problems using real-world datasets. In Detail Apache Spark is the next standard of open-source cluster-computing engine for processing big data. Many practical computing problems concern large graphs, like the Web graph and various social networks. The scale of these graphs - in some cases billions of vertices, trillions of edges - poses challenges to their efficient processing. Apache Spark GraphX API combines the advantages of both data-parallel and graph-parallel systems by efficiently expressing graph computation within the Spark data-parallel framework. This book will teach the user to do graphical programming in Apache Spark, apart from an explanation of the entire process of graphical data analysis. You will journey through the creation of graphs, its uses, its exploration and analysis and finally will also cover the conversion of graph elements into graph structures. This book begins with an introduction of the Spark system, its libraries and the Scala Build Tool. Using a hands-on approach, this book will quickly teach you how to install and leverage Spark interactively on the command line and in a standalone Scala program. Then, it presents all the methods for building Spark graphs using illustrative network datasets. Next, it will walk you through the process of exploring, visualizing and analyzing different network characteristics. This book will also teach you how to transform raw datasets into a usable form. In addition, you will learn powerful operations that can be used to transform graph elements and graph structures. Furthermore, this book also teaches how to create custom graph operations that are tailored for specific needs with efficiency in mind. The later chapters of this book cover more advanced topics such as clustering graphs, implementing graph-parallel iterative algorithms and learning methods from graph data. Style and approach A step-by-step guide that will walk you through the key ideas and techniques for processing big graph data at scale, with practical examples that will ensure an overall understanding of the concepts of Spark.
