Metagenomics

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Metagenomics

Muniyandi Nagarajan
Metagenomics Book PDF

Author : Muniyandi Nagarajan
Publisher : Academic Press
Page : 398 pages
File Size : 41,9 Mb
Release : 2017-11-06
Category : Medical
ISBN : 9780128134030

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Metagenomics by Muniyandi Nagarajan Pdf

Metagenomics: Perspectives, Methods, and Applications provides thorough coverage of the growing field of metagenomics. A diverse range of chapters from international experts offer an introduction to the field and examine methods for metagenomic analysis of microbiota, metagenomic computational tools, and recent metagenomic studies in various environments. The emphasis on application makes this text particularly useful for applied researchers, practitioners, clinicians and students seeking to employ metagenomic approaches to advance knowledge in the biomedical and life sciences. Case-study based application chapters examine topics ranging from viral metagenome profiling, metagenomics in oral disease and health, metagenomic insights into the human gut microbiome and metabolic syndromes, and more. Additionally, perspectives on future potential at the end of each chapter provoke new thought and motivations for continued study in this exciting and fruitful research area. Provides thorough coverage of the rapidly growing field of metagenomics, with an emphasis on applications of relevance to translational researchers, practitioners, clinicians and students Features a diverse range of chapters from international experts that offer an introduction to the field and examine methods for metagenomic analysis of microbiota, metagenomic computational tools and research pipelines Highlights perspectives on future potential at the end of each chapter to provoke new thought and motivations for continued study in this exciting and fruitful research area

The New Science of Metagenomics

National Research Council,Division on Earth and Life Studies,Board on Life Sciences,Committee on Metagenomics: Challenges and Functional Applications
The New Science of Metagenomics Book PDF

Author : National Research Council,Division on Earth and Life Studies,Board on Life Sciences,Committee on Metagenomics: Challenges and Functional Applications
Publisher : National Academies Press
Page : 170 pages
File Size : 55,7 Mb
Release : 2007-06-24
Category : Science
ISBN : 9780309106764

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The New Science of Metagenomics by National Research Council,Division on Earth and Life Studies,Board on Life Sciences,Committee on Metagenomics: Challenges and Functional Applications Pdf

Although we can't usually see them, microbes are essential for every part of human life-indeed all life on Earth. The emerging field of metagenomics offers a new way of exploring the microbial world that will transform modern microbiology and lead to practical applications in medicine, agriculture, alternative energy, environmental remediation, and many others areas. Metagenomics allows researchers to look at the genomes of all of the microbes in an environment at once, providing a "meta" view of the whole microbial community and the complex interactions within it. It's a quantum leap beyond traditional research techniques that rely on studying-one at a time-the few microbes that can be grown in the laboratory. At the request of the National Science Foundation, five Institutes of the National Institutes of Health, and the Department of Energy, the National Research Council organized a committee to address the current state of metagenomics and identify obstacles current researchers are facing in order to determine how to best support the field and encourage its success. The New Science of Metagenomics recommends the establishment of a "Global Metagenomics Initiative" comprising a small number of large-scale metagenomics projects as well as many medium- and small-scale projects to advance the technology and develop the standard practices needed to advance the field. The report also addresses database needs, methodological challenges, and the importance of interdisciplinary collaboration in supporting this new field.

Metagenomics for Microbiology

Jacques Izard,Maria Rivera
Metagenomics for Microbiology Book PDF

Author : Jacques Izard,Maria Rivera
Publisher : Academic Press
Page : 188 pages
File Size : 48,8 Mb
Release : 2014-11-07
Category : Science
ISBN : 9780124105089

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Metagenomics for Microbiology by Jacques Izard,Maria Rivera Pdf

Concisely discussing the application of high throughput analysis to move forward our understanding of microbial principles, Metagenomics for Microbiology provides a solid base for the design and analysis of omics studies for the characterization of microbial consortia. The intended audience includes clinical and environmental microbiologists, molecular biologists, infectious disease experts, statisticians, biostatisticians, and public health scientists. This book focuses on the technological underpinnings of metagenomic approaches and their conceptual and practical applications. With the next-generation genomic sequencing revolution increasingly permitting researchers to decipher the coding information of the microbes living with us, we now have a unique capacity to compare multiple sites within individuals and at higher resolution and greater throughput than hitherto possible. The recent articulation of this paradigm points to unique possibilities for investigation of our dynamic relationship with these cellular communities, and excitingly the probing of their therapeutic potential in disease prevention or treatment of the future. Expertly describes the latest metagenomic methodologies and best-practices, from sample collection to data analysis for taxonomic, whole shotgun metagenomic, and metatranscriptomic studies Includes clear-headed pointers and quick starts to direct research efforts and increase study efficacy, eschewing ponderous prose Presented topics include sample collection and preparation, data generation and quality control, third generation sequencing, advances in computational analyses of shotgun metagenomic sequence data, taxonomic profiling of shotgun data, hypothesis testing, and mathematical and computational analysis of longitudinal data and time series. Past-examples and prospects are provided to contextualize the applications.

Soil Metagenomics

T.C.K. Sugitha,Asish K. Binodh,K. Ramasamy,U. Sivakumar
Soil Metagenomics Book PDF

Author : T.C.K. Sugitha,Asish K. Binodh,K. Ramasamy,U. Sivakumar
Publisher : CRC Press
Page : 239 pages
File Size : 40,5 Mb
Release : 2020-12-15
Category : Science
ISBN : 9781000332612

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Soil Metagenomics by T.C.K. Sugitha,Asish K. Binodh,K. Ramasamy,U. Sivakumar Pdf

This book focuses on the recent advents and technological breakthroughs in metagenomic approaches coupled with their applications in agriculture. The intended audience include soil and environmental microbiologists, molecular biologists and policy makers. The book expertly describes the latest fourth generation metagenomic technologies from sample collection to data analysis, metatranscriptomic, metaproteomic and metabolomics studies Note: T& F does not sell or distribute the Hardback in India, Pakistan, Nepal, Bhutan, Bangladesh and Sri Lanka.

The New Science of Metagenomics

National Research Council,Division on Earth and Life Studies,Board on Life Sciences,Committee on Metagenomics: Challenges and Functional Applications
The New Science of Metagenomics Book PDF

Author : National Research Council,Division on Earth and Life Studies,Board on Life Sciences,Committee on Metagenomics: Challenges and Functional Applications
Publisher : National Academies Press
Page : 170 pages
File Size : 47,9 Mb
Release : 2007-05-24
Category : Science
ISBN : 9780309185752

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The New Science of Metagenomics by National Research Council,Division on Earth and Life Studies,Board on Life Sciences,Committee on Metagenomics: Challenges and Functional Applications Pdf

Although we can't usually see them, microbes are essential for every part of human life-indeed all life on Earth. The emerging field of metagenomics offers a new way of exploring the microbial world that will transform modern microbiology and lead to practical applications in medicine, agriculture, alternative energy, environmental remediation, and many others areas. Metagenomics allows researchers to look at the genomes of all of the microbes in an environment at once, providing a "meta" view of the whole microbial community and the complex interactions within it. It's a quantum leap beyond traditional research techniques that rely on studying-one at a time-the few microbes that can be grown in the laboratory. At the request of the National Science Foundation, five Institutes of the National Institutes of Health, and the Department of Energy, the National Research Council organized a committee to address the current state of metagenomics and identify obstacles current researchers are facing in order to determine how to best support the field and encourage its success. The New Science of Metagenomics recommends the establishment of a "Global Metagenomics Initiative" comprising a small number of large-scale metagenomics projects as well as many medium- and small-scale projects to advance the technology and develop the standard practices needed to advance the field. The report also addresses database needs, methodological challenges, and the importance of interdisciplinary collaboration in supporting this new field.

Viral Metagenomics

Vitantonio Pantaleo,Michela Chiumenti
Viral Metagenomics Book PDF

Author : Vitantonio Pantaleo,Michela Chiumenti
Publisher : Humana
Page : 217 pages
File Size : 48,6 Mb
Release : 2019-03-17
Category : Science
ISBN : 1493992570

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Viral Metagenomics by Vitantonio Pantaleo,Michela Chiumenti Pdf

This volume explores the use of viral metagenomics to diagnose known viruses for plant and food production, human and animal health, and identifying viral vectors like insects. The chapters in this book cover topics, such as sRNAs isolation from tissues of grapevines and woody plants, high-resolution screening of arthropod and plant viral communities, identifying new pathogens in fish, detecting viruses in mycorrhizal fungi and their orchid host, and insect virus discovery through metagenomic and cell culture-based approaches. Written in the highly successful Methods in Molecular Biology series format, chapters include introductions to their respective topics, lists of the necessary materials and reagents, step-by-step, readily reproducible laboratory protocols, and tips on troubleshooting and avoiding known pitfalls. Authoritative and comprehensive, Viral Metagenomics: Methods and Protocols is a valuable resource for researchers and specialists who are interested in learning more about this evolving field.

Metagenomics of the Human Body

Karen E. Nelson
Metagenomics of the Human Body Book PDF

Author : Karen E. Nelson
Publisher : Springer Science & Business Media
Page : 351 pages
File Size : 52,6 Mb
Release : 2010-11-16
Category : Science
ISBN : 9781441970893

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Metagenomics of the Human Body by Karen E. Nelson Pdf

The book brings a completely different perspective than available books by combining the information gained from the human genome with that derived from parallel metagenomic studies, and new results from investigating the effects of these microbes on the host immune system. Although there are a number of books that focus on the human genome that are currently available, there are no books that bring to the forefront the mix of the human genome and the genomes and metagenomes of the microbial species that live within and on us.

Encyclopedia of Metagenomics

Karen E. Nelson
Encyclopedia of Metagenomics Book PDF

Author : Karen E. Nelson
Publisher : Springer
Page : 1528 pages
File Size : 40,7 Mb
Release : 2015-02-18
Category : Science
ISBN : 1461446740

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Encyclopedia of Metagenomics by Karen E. Nelson Pdf

Metagenomics has taken off as one of the major cutting-edge fields of research. The field has broad implications for human health and disease, animal production, and environmental health. Metagenomics has opened up a wealth of data, tools, technologies and applications that allow us to access the majority of organisms that we still cannot access in pure culture (an estimated 99% of microbial life). Numerous research groups are developing tools, approaches and applications to deal with this new field, as larger data sets from environments including the human body, the oceans and soils are being generated. See for example the human microbiome initiative (HMP; http://nihroadmap.nih.gov/hmp/) which has become a world-wide effort, and the Global Ocean Sampling (GOS) surveys; http://www.jcvi.org/cms/research/projects/gos/overview/). The number of publications as measured through PubMed that are focused on metagenomics continues to increase. The field of metagenomics continues to evolve with large common datasets available to the scientific community. A concerted effort is needed to collate all this information in a centralized place. By having all the information in an Encyclopedia form, we have an opportunity to gather seminal contributions from the leaders in the field, and at the same time provide this information to a significant number of junior and senior scientists. It is anticipated that the Encyclopedia will also be used by many other groups including, clinicians, undergraduate and graduate level students, as well as ethical and legal groups associated with or interested in the issues surrounding metagenome science.

Functional Metagenomics: Tools and Applications

Trevor C. Charles,Mark R. Liles,Angela Sessitsch
Functional Metagenomics Tools and Applications Book PDF

Author : Trevor C. Charles,Mark R. Liles,Angela Sessitsch
Publisher : Springer
Page : 253 pages
File Size : 40,5 Mb
Release : 2017-10-09
Category : Science
ISBN : 9783319615103

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Functional Metagenomics: Tools and Applications by Trevor C. Charles,Mark R. Liles,Angela Sessitsch Pdf

In this book, the latest tools available for functional metagenomics research are described.This research enables scientists to directly access the genomes from diverse microbial genomes at one time and study these “metagenomes”. Using the modern tools of genome sequencing and cloning, researchers have now been able to harness this astounding metagenomic diversity to understand and exploit the diverse functions of microorganisms. Leading scientists from around the world demonstrate how these approaches have been applied in many different settings, including aquatic and terrestrial habitats, microbiomes, and many more environments. This is a highly informative and carefully presented book, providing microbiologists with a summary of the latest functional metagenomics literature on all specific habitats.

Metagenomics

Wolfgang R. Streit,Rolf Daniel
Metagenomics Book PDF

Author : Wolfgang R. Streit,Rolf Daniel
Publisher : Springer Nature
Page : 290 pages
File Size : 54,8 Mb
Release : 2022-10-28
Category : Science
ISBN : 9781071627952

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Metagenomics by Wolfgang R. Streit,Rolf Daniel Pdf

This volume provides up-to-date and novel techniques for various screening technologies currently used in metagenomics and related areas. Starting with DNA/RNA isolation from environmental samples, the book continues by delving into areas such as current methods used to isolate DNA and construct metagenomic libraries, establishment of metagenome libraries in non-E. coli hosts, and topics like function-driven mining of metagenomic DNA, screening and analyzing protocols for a wide array of different genes encoding enzymes, bacterial viruses and much more. Written for the highly successful Methods in Molecular Biology series, chapters include introductions to their respective topics, lists of the necessary materials and reagents, step-by-step and readily reproducible protocols, and tips on troubleshooting and avoiding known pitfalls. Authoritative and practical, Metagenomics: Methods and Protocols, Third Edition provides a comprehensive collection of up-to-date metagenome protocols and tools for the recovery of many major types of biocatalysts and allows for the easy setup of these screens in microbiology laboratories.

Metagenomics

Wael N. Hozzein
Metagenomics Book PDF

Author : Wael N. Hozzein
Publisher : BoD – Books on Demand
Page : 164 pages
File Size : 43,8 Mb
Release : 2020-03-25
Category : Science
ISBN : 9781838800550

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Metagenomics by Wael N. Hozzein Pdf

This book is for the students starting their research projects in the field of metagenomics, for researchers interested in the new developments and applications in this field; and for teachers involved in teaching this subject. The book is divided into three sections as indicated from its title, namely; the basics of metagenomics, metagenomic analysis, and applications of metagenomics. It covers the basics of metagenomics from its history and background, to the analysis of metagenomic data as well as its recent applications in different fields. The book contains excellent texts at both the introductory and advanced levels, that describe the latest metagenomic approaches and applications, from sampling to data analysis for taxonomic, environmental, and medical studies. Finally, the publication of this book was an interesting journey for me and I hope the readers will enjoy reading it.

Applications of Metagenomics

Hrudayanath Thatoi,Sukanta Kumar Pradhan,Upendra Kumar
Applications of Metagenomics Book PDF

Author : Hrudayanath Thatoi,Sukanta Kumar Pradhan,Upendra Kumar
Publisher : Academic Press
Page : 430 pages
File Size : 46,7 Mb
Release : 2024-04-26
Category : Medical
ISBN : 9780323984034

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Applications of Metagenomics by Hrudayanath Thatoi,Sukanta Kumar Pradhan,Upendra Kumar Pdf

Applications of Metagenomics: Agriculture, Environment, and Health examines current metagenomics methods and their applications in soil, polluted environment sites, agriculture production, and health care, with separate sections dedicated to each application area. Special attention is paid to the biotechnological study of novel microbial resources for social welfare. Beyond applications, the book discusses evolving next generation technology and techniques used for carrying out metagenomics studies, and in doing so highlights the latest research and advances in the field, along with ways to adapt these approaches for different study types across the biological sciences.Chapter topics range from metagenomics for studying root microbial communities to microbial diversity of the rhizosphere, fungal diversity, microbial biodiversity in forest environments, the human microbiome, and disease epidemiology, with one chapter dedicated to Covid-19 metagenomics. Offers tools to apply evolving next generation sequencing technologies in the detection of disease pathogens, bacteria, viruses, fungi, and parasites across various environments, as well as host response Includes separate sections dedicated to topics and current studies in environmental science, agriculture production and health care Features chapter contributions from international experts in the field

Functional Metagenomics

Maulin P Shah
Functional Metagenomics Book PDF

Author : Maulin P Shah
Publisher : Elsevier
Page : 246 pages
File Size : 43,8 Mb
Release : 2023-11-24
Category : Science
ISBN : 9780323986434

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Functional Metagenomics by Maulin P Shah Pdf

Functional Metagenomics: Microbial Diversity, Interaction, and Application in Bioremediation uses a 20-chapter, easy-to-understand format to centralize the practical application ideas for functional metagenomics. This important resource not only includes chapters on next-generation sequencing technologies to study important biogeochemical cycles, degradation pathways and detoxification, but also gives insight into several tools that have been developed to integrate metadata and sequence data, allowing downstream comparative analyses of different datasets using several ecological indices.Content further explains the newly developed techniques for sequencing DNA; generating shorter fragments than Sanger sequencing techniques to quickly read larger sequences in a shorter amount of time. The content finally explores the role of metagenomics in studying microbial diversity, interaction and application in bioremediation studies and gives the reader overall detailed information regarding metagenomics, its application as well as techniques. Provides comprehensive information to readers on state-of-the-art applications in metagenomics Summarizes our current knowledge of the use of metagenomics and gives a novel and powerful insight into the already existing bioremediation process Gives an overall picture of metagenomics, its application, processes, and future prospects in the field of bioremediation

Metagenomics

Diana Marco
Metagenomics Book PDF

Author : Diana Marco
Publisher : Caister Academic Press Limited
Page : 0 pages
File Size : 54,9 Mb
Release : 2010
Category : Science
ISBN : 1904455549

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Metagenomics by Diana Marco Pdf

The book is essential reading for all researchers currently performing metagenomics studies and is highly recommended for all students and scientists wishing to increase their understanding of this field.

From Genes to Species: Novel Insights from Metagenomics

Eamonn P. Culligan,Roy D. Sleator
From Genes to Species Novel Insights from Metagenomics Book PDF

Author : Eamonn P. Culligan,Roy D. Sleator
Publisher : Frontiers Media SA
Page : 231 pages
File Size : 48,5 Mb
Release : 2016-10-07
Category : Microbiology
ISBN : 9782889199754

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From Genes to Species: Novel Insights from Metagenomics by Eamonn P. Culligan,Roy D. Sleator Pdf

The majority of microbes in many environments are considered “as yet uncultured” and were traditionally considered inaccessible for study through the microbiological gold standard of pure culture. The emergence of metagenomic approaches has allowed researchers to access and study these microbes in a culture-independent manner through DNA sequencing and functional expression of metagenomic DNA in a heterologous host. Metagenomics has revealed an extraordinary degree of diversity and novelty, not only among microbial communities themselves, but also within the genomes of these microbes. This Research Topic aims to showcase the utility of metagenomics to gain insights on the microbial and genomic diversity in different environments by revealing the breadth of novelty that was in the past, largely untapped.