Functional Metagenomics

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Functional Metagenomics: Tools and Applications

Trevor C. Charles,Mark R. Liles,Angela Sessitsch
Functional Metagenomics Tools and Applications Book PDF

Author : Trevor C. Charles,Mark R. Liles,Angela Sessitsch
Publisher : Springer
Page : 253 pages
File Size : 50,5 Mb
Release : 2017-10-09
Category : Science
ISBN : 9783319615103

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Functional Metagenomics: Tools and Applications by Trevor C. Charles,Mark R. Liles,Angela Sessitsch Pdf

In this book, the latest tools available for functional metagenomics research are described.This research enables scientists to directly access the genomes from diverse microbial genomes at one time and study these “metagenomes”. Using the modern tools of genome sequencing and cloning, researchers have now been able to harness this astounding metagenomic diversity to understand and exploit the diverse functions of microorganisms. Leading scientists from around the world demonstrate how these approaches have been applied in many different settings, including aquatic and terrestrial habitats, microbiomes, and many more environments. This is a highly informative and carefully presented book, providing microbiologists with a summary of the latest functional metagenomics literature on all specific habitats.

Functional Metagenomics

Maulin P Shah
Functional Metagenomics Book PDF

Author : Maulin P Shah
Publisher : Elsevier
Page : 246 pages
File Size : 45,6 Mb
Release : 2023-11-24
Category : Science
ISBN : 9780323986434

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Functional Metagenomics by Maulin P Shah Pdf

Functional Metagenomics: Microbial Diversity, Interaction, and Application in Bioremediation uses a 20-chapter, easy-to-understand format to centralize the practical application ideas for functional metagenomics. This important resource not only includes chapters on next-generation sequencing technologies to study important biogeochemical cycles, degradation pathways and detoxification, but also gives insight into several tools that have been developed to integrate metadata and sequence data, allowing downstream comparative analyses of different datasets using several ecological indices.Content further explains the newly developed techniques for sequencing DNA; generating shorter fragments than Sanger sequencing techniques to quickly read larger sequences in a shorter amount of time. The content finally explores the role of metagenomics in studying microbial diversity, interaction and application in bioremediation studies and gives the reader overall detailed information regarding metagenomics, its application as well as techniques. Provides comprehensive information to readers on state-of-the-art applications in metagenomics Summarizes our current knowledge of the use of metagenomics and gives a novel and powerful insight into the already existing bioremediation process Gives an overall picture of metagenomics, its application, processes, and future prospects in the field of bioremediation

The New Science of Metagenomics

National Research Council,Division on Earth and Life Studies,Board on Life Sciences,Committee on Metagenomics: Challenges and Functional Applications
The New Science of Metagenomics Book PDF

Author : National Research Council,Division on Earth and Life Studies,Board on Life Sciences,Committee on Metagenomics: Challenges and Functional Applications
Publisher : National Academies Press
Page : 170 pages
File Size : 50,5 Mb
Release : 2007-06-24
Category : Science
ISBN : 9780309106764

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The New Science of Metagenomics by National Research Council,Division on Earth and Life Studies,Board on Life Sciences,Committee on Metagenomics: Challenges and Functional Applications Pdf

Although we can't usually see them, microbes are essential for every part of human life-indeed all life on Earth. The emerging field of metagenomics offers a new way of exploring the microbial world that will transform modern microbiology and lead to practical applications in medicine, agriculture, alternative energy, environmental remediation, and many others areas. Metagenomics allows researchers to look at the genomes of all of the microbes in an environment at once, providing a "meta" view of the whole microbial community and the complex interactions within it. It's a quantum leap beyond traditional research techniques that rely on studying-one at a time-the few microbes that can be grown in the laboratory. At the request of the National Science Foundation, five Institutes of the National Institutes of Health, and the Department of Energy, the National Research Council organized a committee to address the current state of metagenomics and identify obstacles current researchers are facing in order to determine how to best support the field and encourage its success. The New Science of Metagenomics recommends the establishment of a "Global Metagenomics Initiative" comprising a small number of large-scale metagenomics projects as well as many medium- and small-scale projects to advance the technology and develop the standard practices needed to advance the field. The report also addresses database needs, methodological challenges, and the importance of interdisciplinary collaboration in supporting this new field.

Microbiome Drivers of Ecosystem Function

Javid A. Parray,Nowsheen Shameem,Dilfuza Egamberdieva
Microbiome Drivers of Ecosystem Function Book PDF

Author : Javid A. Parray,Nowsheen Shameem,Dilfuza Egamberdieva
Publisher : Elsevier
Page : 490 pages
File Size : 42,5 Mb
Release : 2024-01-01
Category : Science
ISBN : 9780443223983

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Microbiome Drivers of Ecosystem Function by Javid A. Parray,Nowsheen Shameem,Dilfuza Egamberdieva Pdf

Microbiome Drivers of Ecosystem Function focuses on the advancements in microbial technologies towards harnessing the microbiome for improved crop productivity and health that are at the frontier of agricultural sciences. It provides insights into the diversity of endophytic microbiomes and their potential utility in agricultural production.Increased crop yield through chemical interventions have limit thresholds and alternative, natural and/or integrated approaches are increasingly needed. Microbial inoculants among the ways in which food production efficiency can be improved. Plant growth-promoting soil organisms increase net crop uptake of soil nutrients, resulting in larger crops and higher yields of harvested food. These and other symbiotic associations between plants and microbes can ultimately be exploited for the increased food production necessary to feed the world, in addition to creating safer farming techniques that minimize ecological disruption.As a volume in the Microbiome Research in Plants and Soil series, Microbiome Drivers of Ecosystem Function serves as an ideal reference for researchers and students in the fields of agricultural biotechnology, biochemistry, environmental science, plant biology, agricultural sciences, and agricultural engineering. Provides insights on engineered microbes in sustainable agriculture, recent biotechnological developments, and future prospects Introduces microbes as chief ecological engineers in reinstating equilibrium in degraded ecosystems Presents the current state and development, as well as future challenges in studying plant-microbe interactions Discusses endophytic microbiomes and other microbial consortium with multifunctional plant growth-promoting attributes

Genetics, Genomics and –Omics of Thermophiles, 2nd Edition

Kian Mau Goh,Kok-Gan Chan,Rajesh Kumar Sani,Edgardo Rubén Donati,Anna-Louise Reysenbach
Genetics Genomics and Omics of Thermophiles 2nd Edition Book PDF

Author : Kian Mau Goh,Kok-Gan Chan,Rajesh Kumar Sani,Edgardo Rubén Donati,Anna-Louise Reysenbach
Publisher : Frontiers Media SA
Page : 172 pages
File Size : 46,6 Mb
Release : 2019-06-13
Category : Electronic
ISBN : 9782889459049

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Genetics, Genomics and –Omics of Thermophiles, 2nd Edition by Kian Mau Goh,Kok-Gan Chan,Rajesh Kumar Sani,Edgardo Rubén Donati,Anna-Louise Reysenbach Pdf

This eBook is a collection of articles from a Frontiers Research Topic. Frontiers Research Topics are very popular trademarks of the Frontiers Journals Series: they are collections of at least ten articles, all centered on a particular subject. With their unique mix of varied contributions from Original Research to Review Articles, Frontiers Research Topics unify the most influential researchers, the latest key findings and historical advances in a hot research area! Find out more on how to host your own Frontiers Research Topic or contribute to one as an author by contacting the Frontiers Editorial Office: frontiersin.org/about/contact.

Endophyte Biotechnology

Alexander Schouten
Endophyte Biotechnology Book PDF

Author : Alexander Schouten
Publisher : CABI
Page : 215 pages
File Size : 50,8 Mb
Release : 2019-10-19
Category : Science
ISBN : 9781786399427

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Endophyte Biotechnology by Alexander Schouten Pdf

Most plants are colonized by endophytes: bacterial and fungal microorganisms, without visible disease symptoms. With state-of-the-art knowledge on their discovery, qualities and roles, this book describes endophyte diversity, their value, exploitation and future challenges. It explains how beneficial endophytes colonize plants, and how they might help mitigate climate change effects, assist pest control and interact with mycorrhizal fungi to boost yield. Endophytes can facilitate the access to nutrients, produce particular metabolites, and change the plant's chemistry, physiology and (defense) responses. Endophyte biosynthetic pathways can, alone or in combination with the plant's, yield novel chemicals, with yet-to-be-discovered pharmacological characteristics as well. The book describes how functional metagenomics can explore and boost yields of useful endophyte products.

Metagenomics: Techniques, Applications, Challenges and Opportunities

Reena Singh Chopra,Chirag Chopra,Neeta Raj Sharma
Metagenomics Techniques Applications Challenges and Opportunities Book PDF

Author : Reena Singh Chopra,Chirag Chopra,Neeta Raj Sharma
Publisher : Springer Nature
Page : 225 pages
File Size : 43,7 Mb
Release : 2020-09-08
Category : Science
ISBN : 9789811565298

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Metagenomics: Techniques, Applications, Challenges and Opportunities by Reena Singh Chopra,Chirag Chopra,Neeta Raj Sharma Pdf

This book summarizes the various areas of research in metagenomics and their potential applications in medicine, the environment and biotechnology. The book presents the recent advances in theoretical, methodological and applied aspects of metagenomics and highlights their applications in the fields of environmental microbial forensics, bioremediation, drug-discovery and agriculture. In addition, the book discusses various metagenomics approaches used for understanding the microbial physiology and biochemistry. Lastly the book describes a range of bioinformatics tools and computational methods for metagenomics analysis as well as the functional diversity and dynamics of microbial communities colonizing the human skin.

Metagenomics

Muniyandi Nagarajan
Metagenomics Book PDF

Author : Muniyandi Nagarajan
Publisher : Academic Press
Page : 398 pages
File Size : 41,5 Mb
Release : 2017-11-06
Category : Medical
ISBN : 9780128134030

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Metagenomics by Muniyandi Nagarajan Pdf

Metagenomics: Perspectives, Methods, and Applications provides thorough coverage of the growing field of metagenomics. A diverse range of chapters from international experts offer an introduction to the field and examine methods for metagenomic analysis of microbiota, metagenomic computational tools, and recent metagenomic studies in various environments. The emphasis on application makes this text particularly useful for applied researchers, practitioners, clinicians and students seeking to employ metagenomic approaches to advance knowledge in the biomedical and life sciences. Case-study based application chapters examine topics ranging from viral metagenome profiling, metagenomics in oral disease and health, metagenomic insights into the human gut microbiome and metabolic syndromes, and more. Additionally, perspectives on future potential at the end of each chapter provoke new thought and motivations for continued study in this exciting and fruitful research area. Provides thorough coverage of the rapidly growing field of metagenomics, with an emphasis on applications of relevance to translational researchers, practitioners, clinicians and students Features a diverse range of chapters from international experts that offer an introduction to the field and examine methods for metagenomic analysis of microbiota, metagenomic computational tools and research pipelines Highlights perspectives on future potential at the end of each chapter to provoke new thought and motivations for continued study in this exciting and fruitful research area

Antimicrobial Resistance in Wastewater Treatment Processes

Patricia L. Keen,Raphaël Fugère
Antimicrobial Resistance in Wastewater Treatment Processes Book PDF

Author : Patricia L. Keen,Raphaël Fugère
Publisher : John Wiley & Sons
Page : 390 pages
File Size : 40,6 Mb
Release : 2017-12-18
Category : Science
ISBN : 9781119192435

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Antimicrobial Resistance in Wastewater Treatment Processes by Patricia L. Keen,Raphaël Fugère Pdf

Antimicrobial resistance is arguably the greatest threat to worldwide human health. This book evaluates the roles of human water use, treatment and conservation in the development and spread of antimicrobial resistance. Designed as a companion volume to Antimicrobial Resistance in the Environment (Wiley-Blackwell, 2012), this book is a multi-disciplinary synthesis of topics related to antimicrobial resistance and wastewater treatment processes. Antimicrobial Resistance in Wastewater Treatment Processes assembles detailed discussions written by many of the world's best-known experts in microbiology, civil engineering, chemistry, environmental science, public health and related fields. The book presents a collection of subjects that includes: Current knowledge of the role of the environment in development and spread of antimicrobial resistance Chemical analysis of antibiotics in environmental samples Molecular methods for analysis of antimicrobial resistance genes Advanced wastewater treatment processes and antimicrobial resistance effects Public perception of risk related to health consequences of antimicrobial resistance Public health implications of antimicrobial resistance with focus on wastewater treatment processes Antimicrobial resistance has gained a foothold in the global consciousness as a serious public health threat. There is a much greater appreciation for the role of the environment in the dissemination of antimicrobial resistance and the effects of pollutants that can potentially promote development of resistance in bacteria. Contaminants released from wastewater treatment plants are a concern. In Antimicrobial Resistance in Wastewater Treatment Processes, readers will be guided through examinations of the current science related to this important health issue.

Recent Advancements in Microbial Diversity

Surajit de Mandal,Pankaj Bhatt
Recent Advancements in Microbial Diversity Book PDF

Author : Surajit de Mandal,Pankaj Bhatt
Publisher : Academic Press
Page : 624 pages
File Size : 55,5 Mb
Release : 2020-06-02
Category : Science
ISBN : 9780128212660

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Recent Advancements in Microbial Diversity by Surajit de Mandal,Pankaj Bhatt Pdf

Microorganisms are a major part of the Earth’s biological diversity. Although a lot of research has been done on microbial diversity, most of it is fragmented. This book creates the need for a unified text to be published, full of information about microbial diversity from highly reputed and impactful sources. Recent Advancements in Microbial Diversity brings a comprehensive understanding of the recent advances in microbial diversity research focused on different bodily systems, such as the gut. Recent Advancements in Microbial Diversity also discusses how the application of advanced sequencing technologies is used to reveal previously unseen microbial diversity and show off its function. Gives insight into microbial diversity in different bodily systems Explains novel approaches to studying microbial diversity Highlights the use of omics to analyze the microbial community and its functional attributes Discusses the techniques used to examine microbial diversity, including their applications and respective strengths and weaknesses

Data Processing Handbook for Complex Biological Data Sources

Gauri Misra
Data Processing Handbook for Complex Biological Data Sources Book PDF

Author : Gauri Misra
Publisher : Academic Press
Page : 188 pages
File Size : 52,6 Mb
Release : 2019-03-23
Category : Medical
ISBN : 9780128172803

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Data Processing Handbook for Complex Biological Data Sources by Gauri Misra Pdf

Data Processing Handbook for Complex Biological Data provides relevant and to the point content for those who need to understand the different types of biological data and the techniques to process and interpret them. The book includes feedback the editor received from students studying at both undergraduate and graduate levels, and from her peers. In order to succeed in data processing for biological data sources, it is necessary to master the type of data and general methods and tools for modern data processing. For instance, many labs follow the path of interdisciplinary studies and get their data validated by several methods. Researchers at those labs may not perform all the techniques themselves, but either in collaboration or through outsourcing, they make use of a range of them, because, in the absence of cross validation using different techniques, the chances for acceptance of an article for publication in high profile journals is weakened. Explains how to interpret enormous amounts of data generated using several experimental approaches in simple terms, thus relating biology and physics at the atomic level Presents sample data files and explains the usage of equations and web servers cited in research articles to extract useful information from their own biological data Discusses, in detail, raw data files, data processing strategies, and the web based sources relevant for data processing

Manual of Environmental Microbiology

Cindy H. Nakatsu,Robert V. Miller,Suresh D. Pillai
Manual of Environmental Microbiology Book PDF

Author : Cindy H. Nakatsu,Robert V. Miller,Suresh D. Pillai
Publisher : John Wiley & Sons
Page : 2251 pages
File Size : 49,6 Mb
Release : 2016-05-02
Category : Science
ISBN : 9781683673231

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Manual of Environmental Microbiology by Cindy H. Nakatsu,Robert V. Miller,Suresh D. Pillai Pdf

The single most comprehensive resource for environmental microbiology Environmental microbiology, the study of the roles that microbes play in all planetary environments, is one of the most important areas of scientific research. The Manual of Environmental Microbiology, Fourth Edition, provides comprehensive coverage of this critical and growing field. Thoroughly updated and revised, the Manual is the definitive reference for information on microbes in air, water, and soil and their impact on human health and welfare. Written in accessible, clear prose, the manual covers four broad areas: general methodologies, environmental public health microbiology, microbial ecology, and biodegradation and biotransformation. This wealth of information is divided into 18 sections each containing chapters written by acknowledged topical experts from the international community. Specifically, this new edition of the Manual Contains completely new sections covering microbial risk assessment, quality control, and microbial source tracking Incorporates a summary of the latest methodologies used to study microorganisms in various environments Synthesizes the latest information on the assessment of microbial presence and microbial activity in natural and artificial environments The Manual of Environmental Microbiology is an essential reference for environmental microbiologists, microbial ecologists, and environmental engineers, as well as those interested in human diseases, water and wastewater treatment, and biotechnology.

Environmental Metagenomics, Water Quality and Suggested Remediation Measures of Polluted Waters: A Combined Approach

Inderjeet Tyagi,Vikas Kumar,Rama Rao Karri
Environmental Metagenomics Water Quality and Suggested Remediation Measures of Polluted Waters A Combined Approach Book PDF

Author : Inderjeet Tyagi,Vikas Kumar,Rama Rao Karri
Publisher : Elsevier
Page : 318 pages
File Size : 55,8 Mb
Release : 2024-03-26
Category : Science
ISBN : 9780443136603

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Environmental Metagenomics, Water Quality and Suggested Remediation Measures of Polluted Waters: A Combined Approach by Inderjeet Tyagi,Vikas Kumar,Rama Rao Karri Pdf

Environmental Metagenomics, Water Quality and Suggested Remediation Measures of Polluted Waters: A Combined Approach is a reference handbook for scientists, engineers and early-career researchers seeking guidance in the areas of water quality, and remediation studies. The comprehensive book, which includes case studies and applications from a range of contributors in the field, offers an essential resource in the science of water quality assessment. Includes a range of applications and case studies in wetland, riverine, drinking, and groundwater metagenomics, along with approaches for the remediation of pollutants from wastewater Offers the latest updates on environmental metagenomics and its correlation with water environments, remediation measures, and SDGs Provides key contributions from global researchers in the fields of water chemistry, environmental science, engineering, and public health

Advanced Techniques for Studying Microorganisms in Extreme Environments

Étienne Yergeau
Advanced Techniques for Studying Microorganisms in Extreme Environments Book PDF

Author : Étienne Yergeau
Publisher : Walter de Gruyter GmbH & Co KG
Page : 181 pages
File Size : 49,5 Mb
Release : 2019-10-21
Category : Science
ISBN : 9783110525786

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Advanced Techniques for Studying Microorganisms in Extreme Environments by Étienne Yergeau Pdf

This book will highlight advanced techniques that were recently used for studying microorganisms in extreme environments. Recent technological leaps in the study of microorganisms in the environment now make it possible to comprehensively study microbes in the environment. Extreme environments could benefit from the application of these techniques, but many challenges such as low biomass, low activity and slow growth has prevented their wide adoption. This book will review recent application of state-of-the-art techniques in extreme environments, helping researcher and graduate students get a better knowledge of the tools available.

Sustainable Microbial Technologies for Valorization of Agro-Industrial Wastes

Jitendra Kumar Saini,Surender Singh,Lata Nain
Sustainable Microbial Technologies for Valorization of Agro Industrial Wastes Book PDF

Author : Jitendra Kumar Saini,Surender Singh,Lata Nain
Publisher : CRC Press
Page : 315 pages
File Size : 55,6 Mb
Release : 2022-09-30
Category : Science
ISBN : 9781000655018

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Sustainable Microbial Technologies for Valorization of Agro-Industrial Wastes by Jitendra Kumar Saini,Surender Singh,Lata Nain Pdf

This book provides an overview of the different aspects of microbial bioconversion methodologies for valorization of underutilized wastes of varied nature. It covers microbiological/biotechnological aspects, environmental concerns, bioprocess development, scale-up aspects, challenges, and opportunities in microbial valorization at commercial scale. It explains sustainable microbiological processes for bioconversion and valorization of the wastes for production of various products of commercial interests, including biofuels, bioenergy, and other platform chemicals. The book • presents potential biotechnological topics and strategies for the valuation of agricultural waste materials; • provides technical concepts on the production of various commercially significant bioproducts; • introduces various microbial bioprocesses to sustainably valorize various potential wastes as renewable feedstocks for production of biofuels and biochemicals; • explores the relevant scale-up opportunities, commercialization aspects, and critical technological advances; and • explains concepts and recent trends in life cycle analyses in waste valorization. It is aimed at researchers and graduate students in bioengineering, biochemical engineering, microbial technology/microbiology, environmental engineering, and biotechnology.