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Author : M. Lassig,A. Valleriani
Publisher : Unknown
Page : 356 pages
File Size : 45,9 Mb
Release : 2014-10-01
Category : Electronic
ISBN : 3662143690
Author : M. Lässig,A. Valleriani
Publisher : Springer
Page : 342 pages
File Size : 55,9 Mb
Release : 2010-12-09
Category : Science
ISBN : 3642077439
People have always asked what distinguishes the living from the inanimate world and what uni?es the two. The ?elds of biology and physics have a long history of exchange. Milestones at the molecular level were the discoveries of the structure ofDNA,RNA,andproteins. It is not by coincidence that this exchange has intensi?ed in recent years. Laboratory experiments reach down to the level of single molecules. Moreover, thereisnowavastamountofgenomicinformation,whichisstillgrowingex- nentially due to the various sequencing projects. Biologists increasingly feel the need for theoretical models to interpret these data in a quantitative way. At the sametime,theoreticalphysicshasmadesigni?cantprogressinareaslikelyto be relevant for the understanding of biological systems. Some important ex- plesarecooperativephenomena,statisticsfarfromthermodynamicequilibrium, systemswithquencheddisorder,andsoftmatter. Some forms of biological matter have indeed become established areas of - searchwithinphysics,suchasbiomembranes,heteropolymers,molecularmotors, microtubules,neuralsystemsetc.Thisvolumeisfocusedonadi?erentaspect of the living world that can be calledbiologicalinformation,itscoding,rep- duction,andevolution.Biologicalinformationistranslatedintostructuresand patternsoveranenormousrangeofscales,fromsinglebiomoleculestospecies networks coupled over entire continents. Thestatisticaltheory of biological information lives not only in three-dim- sional space. It involves various abstract spaces in which this information is encodedandevolves,suchasnucleotidesequences,genenetworks,ortopologies of the ‘tree of life’. The articles collected highlight a few directions of research that may become important parts of this emerging ?eld. The ?rst part of the book,MolecularInformationandEvolution,startswith twoarticlesonsequencesimilarityanalysis,acentralthemeinbioinformatics which has surprisingly deep connections to statistical physics. The genetic code, RNA,andproteinsarethreeexamplesoftheintricateinterplayofsequence, structure,andfunctioninevolution.
Author : M. Lässig,A. Valleriani
Publisher : Springer
Page : 342 pages
File Size : 47,9 Mb
Release : 2008-01-11
Category : Science
ISBN : 9783540456926
This set of lecture notes gives a first coherent account of a novel aspect of the living world that can be called biological information. The book presents both a pedagogical and state-of-the art roadmap of this rapidly evolving area and covers the whole field, from information which is encoded in the molecular genetic code to the description of large-scale evolution of complex species networks. The book will prove useful for all those who work at the interface of biology, physics and information science.
Author : Sunny Y. Auyang
Publisher : Cambridge University Press
Page : 422 pages
File Size : 45,7 Mb
Release : 1998
Category : Business & Economics
ISBN : 0521778263
Analyzes approaches to the study of complexity in the physical, biological, and social sciences.
Author : Paulo Murilo C. de Oliveira,Dietrich Stauffer
Publisher : Springer Science & Business Media
Page : 156 pages
File Size : 50,9 Mb
Release : 2013-04-17
Category : Technology & Engineering
ISBN : 9783322910097
This book for physicists, biologists, computer scientists, economists or social scientists shows in selected examples how computer simulation methods which are typical to statistical physics have been applied in other areas outside of physics. Our main part deals with the biology of ageing, while other examples are the functioning of the immune system, the structure of DNA, the fluctuations on the stock market, theories for sociology and for World War II. Are leaky water faucets similar to our heartbeats? Throughout the book we emphasize microscopic models dealing with the action of individuals, whether they are cells of the immune system or traders speculating on the currency market. Complete computer programs are given and explained for biological ageing. The references try to introduce the expert from the covered other fields to the relevant physics literature; and they also show the physicists the way into the biological literature on ageing.
Author : Robert U. Ayres
Publisher : Springer Science & Business Media
Page : 324 pages
File Size : 41,7 Mb
Release : 1997-05-08
Category : Science
ISBN : 0883189119
Market: Those in economics, especially thermodynamics, statistical mechanics, cybernetics, information theory, resource use, and evolutionary economic behavior. This book presents an innovative and challenging look at evolution on several scales, from the earth and its geology and chemistry to living organisms to social and economic systems. Applying the principles of thermodynamics and the concepts of information gathering and self- organization, the author characterizes the direction of evolution in each case as an accumulation of "distinguishability" information--a type of universal knowledge.
Author : Eric Bertin
Publisher : Unknown
Page : 0 pages
File Size : 41,8 Mb
Release : 2021
Category : Electronic
ISBN : 3030799506
This third edition of Statistical Physics of Complex Systems has been expanded to provide more examples of applications of concepts and methods from statistical physics to the modeling of complex systems. These include avalanche dynamics in materials, models of social agents like road traffic or wealth repartition, the real space aspects of biological evolution dynamics, propagation phenomena on complex networks, formal neural networks and their connection to constraint satisfaction problems. This course-tested textbook provides graduate students and non-specialists with a basic understanding of the concepts and methods of statistical physics and demonstrates their wide range of applications to interdisciplinary topics in the field of complex system sciences, including selected aspects of theoretical modeling in biology and the social sciences. It covers topics such as non-conserved particles, evolutionary population dynamics, networks, properties of both individual and coupled simple dynamical systems, and convergence theorems, as well as short appendices that offer helpful hints on how to perform simple stochastic simulations in practice. The original spirit of the book is to remain accessible to a broad, non-specialized readership. The format is a set of concise, modular, and self-contained topical chapters, avoiding technicalities and jargon as much as possible, and complemented by a wealth of worked-out examples, so as to make this work useful as a self-study text or as textbook for short courses.
Author : Michael P. H. Stumpf,Carsten Wiuf
Publisher : World Scientific
Page : 179 pages
File Size : 46,9 Mb
Release : 2010
Category : Science
ISBN : 9781848164338
Networks provide a very useful way to describe a wide range of different data types in biology, physics and elsewhere. Apart from providing a convenient tool to visualize highly dependent data, networks allow stringent mathematical and statistical analysis. In recent years, much progress has been achieved to interpret various types of biological network data such as transcriptomic, metabolomic and protein interaction data as well as epidemiological data. Of particular interest is to understand the organization, complexity and dynamics of biological networks and how these are influenced by network evolution and functionality. This book reviews and explores statistical, mathematical and evolutionary theory and tools in the understanding of biological networks. The book is divided into comprehensive and self-contained chapters, each of which focuses on an important biological network type, explains concepts and theory and illustrates how these can be used to obtain insight into biologically relevant processes and questions. There are chapters covering metabolic, transcriptomic, protein interaction and epidemiological networks as well as chapters that deal with theoretical and conceptual material. The authors, who contribute to the book, are active, highly regarded and well-known in the network community.
Author : John Scales Avery
Publisher : World Scientific
Page : 233 pages
File Size : 45,5 Mb
Release : 2003-05-28
Category : Science
ISBN : 9789814485753
This highly interdisciplinary book discusses the phenomenon of life, including its origin and evolution (and also human cultural evolution), against the background of thermodynamics, statistical mechanics, and information theory. Among the central themes is the seeming contradiction between the second law of thermodynamics and the high degree of order and complexity produced by living systems. This paradox has its resolution in the information content of the Gibbs free energy that enters the biosphere from outside sources, as the author shows. The role of information in human cultural evolution is another focus of the book. One of the final chapters discusses the merging of information technology and biotechnology into a new discipline — bio-information technology.
Author : James Patrick Crutchfield,Peter Schuster
Publisher : Oxford University Press, USA
Page : 492 pages
File Size : 52,9 Mb
Release : 2003
Category : Mathematics
ISBN : 0195142659
The 14 chapters of this volume, which present an overview of new research in evolutionary dynamics, were first presented at a conference held in October 1998 at the Santa Fe Institute. The main divisions of the book are macroevolution; epochal evolution; population genetics, dynamics, and optimization; and evolution of cooperation. Individual topics include spectral landscape theory, external triggers in biological evolution, and evolutionary dynamics of asexual reproduction. Several of the contributors, like the editors, are affiliated with the Sante Fe Institute; others teach or work in physics, genetics, biology, computational neuroscience, and theoretical chemistry at universities and private institutions in the US, UK, Austria, Sweden, Australia, Israel, and Germany. Annotation copyrighted by Book News, Inc., Portland, OR
Author : D. Reguera,J.M.G. Vilar,J.M. Rubi
Publisher : Springer Science & Business Media
Page : 348 pages
File Size : 41,5 Mb
Release : 1999-10-19
Category : Science
ISBN : 3540662456
This book demonstrates the usefulness of tools from statistical mechanics for biology. It includes the new tendencies in topics like membranes, vesicles, microtubules, molecular motors, DNA, protein folding, phase transitions in biological systems, evolution, population dynamics, neural systems and biological oscillators, with special emphasis on the importance of statistical mechanics in their development. The book addresses researchers and graduate students.
Author : D. Reguera,J. M. G. Vilar,J.M. Rubi
Publisher : Unknown
Page : 336 pages
File Size : 49,7 Mb
Release : 2014-10-02
Category : Electronic
ISBN : 3662142295
Author : Mikhail V. Volkenstein
Publisher : Springer Science & Business Media
Page : 410 pages
File Size : 43,5 Mb
Release : 2012-12-06
Category : Science
ISBN : 9783642787881
"Mr. Wolkenstein's Physical Approaches to Biological Evolution, whether or not it proves to give the ultimate truth on the matters with which it deals, certainly deserves, by its breadth and scope and profundity, to be considered an impor tant event in the philosophical world." This is a quotation from an introduction written by Bertrand Russell for Ludwig Wittgenstein's Tractatus Logico-Philosophicus. I exchanged only name and subject. As for the rest, I could continue quoting Russell, but I would rather say something myself. As Wittgenstein did with formal logic, Wolkenstein rectifies our views on how to approach the logic of life from a formal theoretical basis. Many bio logists do not believe that their subject lends itself to the scrutiny of physical theory. They certainly admit that one can simulate biological phenomena by models that can be expressed in a mathematical form. However, they do not believe that biology can be given a theoretical foundation that is defined within the general framework of physics. Rather, they insist on a holistic approach, banning any reduction to fundamental principles subject to physical theory.
Author : Ralf Blossey
Publisher : CRC Press
Page : 285 pages
File Size : 40,6 Mb
Release : 2019-06-11
Category : Computers
ISBN : 9780429994616
Computational biology has developed rapidly during the last two decades following the genomic revolution which culminated in the sequencing of the human genome. More than ever it has developed into a field which embraces computational methods from different branches of the exact sciences: pure and applied mathematics, computer science, theoretical physics. This Second Edition provides a solid introduction to the techniques of statistical mechanics for graduate students and researchers in computational biology and biophysics. Material has been reorganized to clarify equilbrium and nonequilibrium aspects of biomolecular systems Content has been expanded, in particular in the treatment of the electrostatic interactions of biomolecules and the application of non-equilibrium statistical mechanics to biomolecules New network-based approaches for the study of proteins are presented. All treated topics are put firmly in the context of the current research literature, allowing the reader to easily follow an individual path into a specific research field. Exercises and Tasks accompany the presentations of the topics with the intention of enabling the readers to test their comprehension of the developed basic concepts.
Author : Enzo Tiezzi
Publisher : WIT Press
Page : 177 pages
File Size : 54,6 Mb
Release : 2006
Category : Science
ISBN : 9781845640354
This book introduces the elements of a new evolutionary approach to physics. Based on intuition, this concept was originated by the late Chemistry Nobel Prize winner Ilya Prigogine.The text will appeal to both technical and graduate audiences as well as general readers. It deals with the following topics: Epistemological Basis of Evolutionary Thermodynamics; Far From Equilibrium - Thermodynamics and Irreversibility; The Concept of Negentropy (From Boltzman to Szent-György, Through Schrödinger's "What's Life"); Energy Versus Entropy; Is Entropy Always a Function State? The Arrow of Time and the Role of Events in an Evolutionary Physical-Chemistry; First and Second Principles of Thermodynamics Revisited; Introduction to Ecodynamics - Fundamental Principles; A Physics for Biosystems and Ecosystems - Cross-Fertilization Between Evolutionary Thermodynamics and Systems Ecology; The Supramolecular Structure of Water - A Magnetic Resonance Approach; Nuclear Spin Relaxation Times; Dissipative Structures in Nature - The Bat's Case (Biodiversity and Strange Attractors); Application of Ecodynamic Models to Sustainable Development; Biosphere Global Ecodynamic Models; and Dissipative Structures and Design.