Evolution And Impact Of Transposable Elements

Author : Pierre Capy
Publisher : Springer Science & Business Media
Page : 366 pages
File Size : 41,7 Mb
Release : 1998-01-31
Category : Science
ISBN : 0792346904

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Evolution and Impact of Transposable Elements by Pierre Capy Pdf

During the last 50 years, the perception oftransposable elements (TEs) has changed considerably from selfish DNA to sequences that may contribute significantly to genome function and evolution. The recent increased interest in TEs is based on the realization that they are a major genetic component (at least 10--20%) of all organisms and a major contributor to the mutation process. It is currently estimated that 70--80% of spontaneous mutations are the result of TE-mediated insertions, deletions, or chromosomal rearrangements. Thus, it seems at least plausible that TEs may playa significant role in the adaptation and evolution of natural populations and species. The ubiquity of TEs suggests that they are an old component of genomes which have been vertically transmitted through generations over evolutionary time. However, detailed analyses carried out over the last 20 years have revealed several unusual features of TE evolution: (i) TEs can be horizontally transferred between species; (ii) TE evolutionary rates can be dramatically increased by specific inactivation processes, such as the RIP (Repeat Induced Point mutation) mechanism in fungi; (iii) TEs can influence the regulation of other TEs by insertion or deletion; (iv) different classes of TEs in even distantly related species can be remarkably similar in both structure and function.

Author : Pierre Capy
Publisher : Springer Science & Business Media
Page : 305 pages
File Size : 52,5 Mb
Release : 2012-12-06
Category : Science
ISBN : 9789401148986

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Evolution and Impact of Transposable Elements by Pierre Capy Pdf

During the last 50 years, the perception oftransposable elements (TEs) has changed considerably from selfish DNA to sequences that may contribute significantly to genome function and evolution. The recent increased interest in TEs is based on the realization that they are a major genetic component (at least 10--20%) of all organisms and a major contributor to the mutation process. It is currently estimated that 70--80% of spontaneous mutations are the result of TE-mediated insertions, deletions, or chromosomal rearrangements. Thus, it seems at least plausible that TEs may playa significant role in the adaptation and evolution of natural populations and species. The ubiquity of TEs suggests that they are an old component of genomes which have been vertically transmitted through generations over evolutionary time. However, detailed analyses carried out over the last 20 years have revealed several unusual features of TE evolution: (i) TEs can be horizontally transferred between species; (ii) TE evolutionary rates can be dramatically increased by specific inactivation processes, such as the RIP (Repeat Induced Point mutation) mechanism in fungi; (iii) TEs can influence the regulation of other TEs by insertion or deletion; (iv) different classes of TEs in even distantly related species can be remarkably similar in both structure and function.

Author : Marie-Angèle Grandbastien,Josep Casacuberta
Publisher : Springer Science & Business Media
Page : 338 pages
File Size : 44,6 Mb
Release : 2013-01-08
Category : Science
ISBN : 9783642318429

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Plant Transposable Elements by Marie-Angèle Grandbastien,Josep Casacuberta Pdf

Transposable elements are short lengths of DNA with the capacity to move between different points within a genome. This process can affect the function of genes at or near the insertion site. The present book gives an overview of the impact of transposable elements on plant genomes and explains how to recognize and study transposable elements, e.g. by using state-of-the-art strategies like “new generation sequencing.” Moreover, the impact of transposable elements on plant genome structure and function is reviewed in detail, and also illustrated in examples and case studies. The book is intended both for readers familiar with the field and for newcomers. With large-scale sequencing becoming increasingly available, more and more people will come across transposable element sequences in their data, and this volume will hopefully help to convince them that they are not just “junk DNA.”

Author : J. F. McDonald
Publisher : Springer Science & Business Media
Page : 288 pages
File Size : 40,8 Mb
Release : 2012-12-06
Category : Science
ISBN : 9789401141567

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Transposable Elements and Genome Evolution by J. F. McDonald Pdf

Once considered merely `selfish' or `parasitic' DNA, transposable elements are today recognized as being of major biological significance. Not only are these elements a major source of mutation, they have contributed both directly and indirectly to the evolution of genome structure and function. On October 8-10, 1999, 100 molecular biologists and evolutionists representing 11 countries met on the campus of The University of Georgia in Athens for the inaugural Georgia Genetics Symposium. The topics of presentations ranged from how the elements themselves have evolved to the impact transposable elements have had on the evolution of their host genomes. The papers in this volume therefore represent state-of-the-art thinking, by leading world experts in the field, on the evolutionary significance of transposable elements.

Author : Jose Luis Garcia Perez
Publisher : Humana
Page : 0 pages
File Size : 43,5 Mb
Release : 2016-02-20
Category : Medical
ISBN : 1493933701

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Transposons and Retrotransposons by Jose Luis Garcia Perez Pdf

This volume covers the latest protocols designed to identify and characterize TEs in genomes, ancient or recently inserted. Additionally, this book includes a series of protocols designed to understand how host genomes act to regulate the activity of TEs, from elegant genetic mobilization assays to key biochemical methods. Finally, this book also includes chapters that describe how TEs can be used for biotechnological applications. Written for the Methods in Molecular Biology series, chapters include introductions to their respective topics, lists of the necessary materials and reagents, step-by-step, readily reproducible laboratory protocols, and tips on troubleshooting and avoiding known pitfalls. Authoritative and practical, Transposons and Retrotransposons: Methods and Protocols aims to ensure successful results in the further study of this vital field.

Author : Pierre Capy
Publisher : International Thomson Publishing Services
Page : 216 pages
File Size : 40,6 Mb
Release : 1998
Category : Science
ISBN : UOM:39015040616834

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Dynamics and Evolution of Transposable Elements by Pierre Capy Pdf

This text deals with the evolution of transposable elements (TE). Two main aspects are presented. First, after a description of the main types of elements, their life and death within a species, including regulation of transposition, and their distribution in natural populations and on chromosomes are discussed. Then, the impact of TEs on the host genomes, the putative relationship between environment and transposition rates lead to a discussion of the interaction (or coevolution) between TEs and their host. Second, these results introduce the analysis of the phylogenies of TEs and their interpretations, according to different models i.e. horizontal versus vertical transmission. Finally, the questions of the origin and of the general evolution of TEs is raised from the comparison of conserved regions like reverse transcriptase or transposase-integrase domains.

Author : Wolfgang J. Miller,Pierre Capy
Publisher : Springer Science & Business Media
Page : 295 pages
File Size : 43,9 Mb
Release : 2008-02-05
Category : Medical
ISBN : 9781592597550

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Mobile Genetic Elements by Wolfgang J. Miller,Pierre Capy Pdf

Leading experts describe in step-by-step detail their most productive transposon-based methods and strategies for studying genome structure, function, and evolution. These readily reproducible techniques cover a wide range, including mutagenesis, transgenesis, gene silencing, and molecular systematics. Among the highlights are a series of DNA hybridization methods for analyzing the distribution and dynamics of mobile DNA at the hosts' genomic level, techniques for studying LTR retrotransposons in heterologous host systems, and mutagenesis protocols for investigating gene functions in a broad range of organisms. These cutting-edge methods offer investigators powerful genetic tools for dissecting the function of a specific gene, elaborating on the mechanisms leading to genetic change and diversity, and studying the evolutionary impact of mobile DNA on the biology and evolution of organisms.

Author : J. F. McDonald
Publisher : Springer Science & Business Media
Page : 355 pages
File Size : 51,9 Mb
Release : 2012-12-06
Category : Medical
ISBN : 9789401120289

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Transposable Elements and Evolution by J. F. McDonald Pdf

In the summer of 1992 a distinguished group of molecular, population and evolutionary geneticists assembled on the campus of the University of Georgia in Athens, USA to discuss the relevance of their research to the role played by transposable elements (TEs) in evolution. The meeting consisted of a series of informal discussions of issues brought up in papers written by the participants and distributed among them prior to the meeting. These papers and the transcripts of the ensuing discussions are presented in this volume.

Author : Nina V. Fedoroff
Publisher : John Wiley & Sons
Page : 240 pages
File Size : 46,7 Mb
Release : 2013-01-16
Category : Science
ISBN : 9781118500101

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Plant Transposons and Genome Dynamics in Evolution by Nina V. Fedoroff Pdf

The transposable genetic elements, or transposons, as they are now known, have had a tumultuous history. Discovered in the mid-20th century by Barbara McClintock, they were initially received with puzzlement. When their genomic abundance began to be apparent, they were categorized as "junk DNA" and acquired the label of parasites. Expanding understanding of gene and genome organization has revealed the profound extent of their impact on both. Plant Transposons and Genome Dynamics in Evolution captures and distills the voluminous research literature on plant transposable elements and seeks to assemble the big picture of how transposons shape gene structure and regulation, as well as how they sculpt genomes in evolution. Individual chapters provide concise overviews of the many flavors of plant transposons and of their roles in gene creation, gene regulation, development, genome evolution, and organismal speciation, as well as of their epigenetic regulation. This volume is essential reading for anyone working in plant genetics, epigenetics, or evolutionary biology.

Author : Michael Chandler,Martin Gellert,Alan M. Lambowitz,Phoebe A. Rice,Suzanne B. Sandmeyer
Publisher : John Wiley & Sons
Page : 1321 pages
File Size : 52,7 Mb
Release : 2020-07-24
Category : Science
ISBN : 9781555819217

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Mobile DNA III by Michael Chandler,Martin Gellert,Alan M. Lambowitz,Phoebe A. Rice,Suzanne B. Sandmeyer Pdf

An exploration of the raw power of genetic material to refashion itself to any purpose... Virtually all organisms contain multiple mobile DNAs that can move from place to place, and in some organisms, mobile DNA elements make up a significant portion of the genome. Mobile DNA III provides a comprehensive review of recent research, including findings suggesting the important role that mobile elements play in genome evolution and stability. Editor-in-Chief Nancy L. Craig assembled a team of multidisciplinary experts to develop this cutting-edge resource that covers the specific molecular mechanisms involved in recombination, including a detailed structural analysis of the enzymes responsible presents a detailed account of the many different recombination systems that can rearrange genomes examines the tremendous impact of mobile DNA in virtually all organisms Mobile DNA III is valuable as an in-depth supplemental reading for upper level life sciences students and as a reference for investigators exploring new biological systems. Biomedical researchers will find documentation of recent advances in understanding immune-antigen conflict between host and pathogen. It introduces biotechnicians to amazing tools for in vivo control of designer DNAs. It allows specialists to pick and choose advanced reviews of specific elements and to be drawn in by unexpected parallels and contrasts among the elements in diverse organisms. Mobile DNA III provides the most lucid reviews of these complex topics available anywhere.

Author : J. F. McDonald
Publisher : Springer
Page : 366 pages
File Size : 40,6 Mb
Release : 1993-09-30
Category : Medical
ISBN : STANFORD:36105006050244

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Transposable Elements and Evolution by J. F. McDonald Pdf

In the summer of 1992 a distinguished group of molecular, population and evolutionary geneticists assembled on the campus of the University of Georgia in Athens, USA to discuss the relevance of their research to the role played by transposable elements (TEs) in evolution. The meeting consisted of a series of informal discussions of issues brought up in papers written by the participants and distributed among them prior to the meeting. These papers and the transcripts of the ensuing discussions are presented in this volume.

Author : Maria Anisimova
Publisher : Unknown
Page : 128 pages
File Size : 50,6 Mb
Release : 2012
Category : Evolutionary genetics
ISBN : 1617795828

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Evolutionary Genomics by Maria Anisimova Pdf

Author : National Academy of Sciences
Publisher : National Academies Press
Page : 354 pages
File Size : 44,8 Mb
Release : 2000-11-11
Category : Science
ISBN : 9780309070997

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Variation and Evolution in Plants and Microorganisms by National Academy of Sciences Pdf

"The present book is intended as a progress report on [the] synthetic approach to evolution as it applies to the plant kingdom." With this simple statement, G. Ledyard Stebbins formulated the objectives of Variation and Evolution in Plants, published in 1950, setting forth for plants what became known as the "synthetic theory of evolution" or "the modern synthesis." The pervading conceit of the book was the molding of Darwin's evolution by natural selection within the framework of rapidly advancing genetic knowledge. At the time, Variation and Evolution in Plants significantly extended the scope of the science of plants. Plants, with their unique genetic, physiological, and evolutionary features, had all but been left completely out of the synthesis until that point. Fifty years later, the National Academy of Sciences convened a colloquium to update the advances made by Stebbins. This collection of 17 papers marks the 50th anniversary of the publication of Stebbins' classic. Organized into five sections, the book covers: early evolution and the origin of cells, virus and bacterial models, protoctist models, population variation, and trends and patterns in plant evolution.

Author : Pierre Capy
Publisher : R G Landes Company
Page : 197 pages
File Size : 43,5 Mb
Release : 1998
Category : Science
ISBN : 1570595119

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Dynamics and Evolution of Transposable Elements by Pierre Capy Pdf

Author : Daniel J. Fairbanks
Publisher : Prometheus Books
Page : 294 pages
File Size : 52,7 Mb
Release : 2009-09-18
Category : Science
ISBN : 9781615920099

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Relics of Eden by Daniel J. Fairbanks Pdf

Since the publication in 1859 of Darwin’s Origin of Species, debate over the theory of evolution has been continuous and often impassioned. In recent years, opponents of "Darwin’s dangerous idea" have mounted history’s most sophisticated and generously funded attack, claiming that evolution is "a theory in crisis." Ironically, these claims are being made at a time when the explosion of information from genome projects has revealed the most compelling and overwhelming evidence of evolution ever discovered. Much of the latest evidence of human evolution comes not from our genes, but from so-called "junk DNA," leftover relics of our evolutionary history that make up the vast majority of our DNA. Relics of Eden explores this powerful DNA-based evidence of human evolution. The "relics" are the millions of functionally useless but scientifically informative remnants of our evolutionary ancestry trapped in the DNA of every person on the planet. For example, the analysis of the chimpanzee and Rhesus monkey genomes shows indisputable evidence of the human evolutionary relationship with other primates. Over 95 percent of our genome is identical with that of chimpanzees and we also have a good deal in common with other animal species. Author Daniel J. Fairbanks also discusses what DNA analysis reveals about where humans originated. The diversity of DNA sequences repeatedly confirms the archeological evidence that humans originated in sub-Saharan Africa (the "Eden" of the title) and from there migrated through the Middle East and Asia to Europe, Australia, and the Americas. In conclusion, Fairbanks confronts the supposed dichotomy between evolution and religion, arguing that both science and religion are complementary ways to seek truth. He appeals to the vast majority of Americans who hold religious convictions not to be fooled by the pseudoscience of Creationists and Intelligent Design advocates and to abandon the false dichotomy between religion and real science. This concise, very readable presentation of recent genetic research is completely accessible to the nonspecialist and makes for enlightening and fascinating reading.