Multiplexing Of Singleplex Real Time Pcr Assays Into Duplexes And Triplexes

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Multiplexing of Singleplex Real-Time-PCR Assays into Duplexes and Triplexes

Author : Patrick Maaß
Publisher : diplom.de
Page : 54 pages
File Size : 53,8 Mb
Release : 2011-05-16
Category : Science
ISBN : 9783842814370

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Multiplexing of Singleplex Real-Time-PCR Assays into Duplexes and Triplexes by Patrick Maaß Pdf

Inhaltsangabe:Introduction: Breast Cancer: Cancer describes a group of various diseases, where cells start changing their molecular structure and begin to grow and to supersede normal cells. Cancer is induced by numerous different elicitors, which finally all lead to an interference of the genetically regulated balance between cell cycle and apoptosis. Although every organ in the human body can be afflicted with cancer, there are significant differences in frequency relating amongst others to age, sex, geographic region and personal habits. In the industrialized countries, breast cancer is the leading cause of death for women at the age between 30 and 60 years. With estimated 636.000 incident cases in the developed countries and 514.000 in the developing countries, breast cancer is the most prevalent cancer type among woman worldwide. Once detected, the cancer is classified based upon pathological characterizations of the tumor or a biopsy and the lymph nodes. A clinical way of characterizing the tumor is the TNM-classification, which describes the size of the tumor (T), the number of affected lymph nodes (N) and the existence of distant metastases (M). The histological classification characterizes the carcinoma according to its structural and cellular appearance and the amitosis rate leading to a grading from 1 to 3. An immuno-histological examination provides information about the estrogen- and the progesterone-receptor- and about the Her-2/neu-status. Breast cancer is a very heterogeneous disease. There are basic classifications that are unquestioned, even today. Recent studies confirmed the need to determine well known markers (i.e. estrogen (ER) and progesterone (PR) receptor status or HER2 status), but the large variety of subtypes and the corresponding different molecular pattern impede a uniform treatment. Although already today other factors than anatomical classifications are being taken into consideration, there exists a need for further biological markers to assist the physician in charge with his evaluation. Beside the diagnostic recognition, the choice of appropriate therapy and the prediction of prognosis are goals that should be reached in order to prevent early stage cancer patients from therapies that provide minimal benefit but reduce their quality of life by intense adverse reactions. RNA Expression Profiling and Prediction: Already today there are numerous genes associated with breast cancer occurrence, therapy [...]

Multiplexing of PCR Assays in Breast Cancer Analysis

Author : Patrick Maaß
Publisher : diplom.de
Page : 53 pages
File Size : 48,9 Mb
Release : 2012-03-01
Category : Science
ISBN : 9783863416072

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Multiplexing of PCR Assays in Breast Cancer Analysis by Patrick Maaß Pdf

Das Werk beschreibt die Optimierung eines prognostischen molekularbiologischen Tests für die Brustkrebs-Diagnose und -Therapieentscheidung. Im Rahmen der Arbeit wurde die Zahl der Reaktionsräume für Polymerasekettenreaktionen (PCR) durch die Optimierung vom Multiplexen derart reduziert, dass parallele und kosteneffizientere Analysen möglich wurden.

Testing and Analysis of GMO-containing Foods and Feed

Author : Salah E. O. Mahgoub,Leo M.L. Nollet
Publisher : CRC Press
Page : 329 pages
File Size : 46,7 Mb
Release : 2019-01-15
Category : Health & Fitness
ISBN : 9780429685323

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Testing and Analysis of GMO-containing Foods and Feed by Salah E. O. Mahgoub,Leo M.L. Nollet Pdf

An increasing number of genetically modified organisms (GMOs) continues to be produced every day. In response to the concerns raised by the development of GMOs and their incorporation in foods and feed, guidelines and regulations to govern and control the use of GMOs and their products have been enacted. These regulations necessitated the design of methods to detect and analyse the presence of GMOs or their products in agriculture produce, food and feed production chains. Design of techniques and instruments that would detect, identify, and quantify GM ingredients in food and feed will help inspection authorities to relay reliable information to consumers who might be concerned about the presence of GM ingredients. Information generated by detection of GMOs in food and feed would be helpful for setting regulations that govern the use of GM components as well as for labeling purposes. Qualitative detection methods of GM-DNA sequences in foods and feeds have evolved fast during the past few years. There is continuous need for the development of more advanced multi-detection systems and for periodic updates of the databases related to these systems. Testing and Analysis of GMO-containing Foods and Feed presents updates and comprehensive views on the various methods and techniques in use today for the detection, identification and quantification of GMOs in foods and feed. The eleven book chapters cover recent developments on sample preparation techniques, immunoassays methods and the PCR technique used in GMO analysis, the use of biosensors in relation to GMO analysis, the application of nucleic acid microarrays for the detection of GMOs, validation and standardization methods for GMO testing, in addition to the type of reference material and reference methods used in GMO testing and analysis. Some of the ISO standards designed for identifying and detecting the presence of GM material in foods are also presented in the book.

Protocols in Advanced Genomics and Allied Techniques

Author : Aruna Pal
Publisher : Springer Nature
Page : 762 pages
File Size : 55,9 Mb
Release : 2021-11-14
Category : Science
ISBN : 9781071618189

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Protocols in Advanced Genomics and Allied Techniques by Aruna Pal Pdf

This laboratory manual includes the latest tools and techniques involved in genomic research. It starts with an introductory chapter on genomics and the various tools and applications involved. The initial chapters present protocols for basic techniques such as DNA isolation, electrophoresis, PCR, cDNA synthesis etc. The book then goes on to describe more advanced techniques such as next-generation sequencing, exome sequencing, use of RNAi, RNAseq, genome editing, single cell genomics etc. Each topic includes a brief description, information on the principles involved, materials & methods, protocol, and expected results, with diagrams and graphs. All protocols are presented in a very lucid and precise way, to make it easy for readers to follow and replicate them.

Analytical Advances in Forensic Science

Author : Katie Maree Horsman
Publisher : Unknown
Page : 372 pages
File Size : 43,6 Mb
Release : 2007
Category : DNA
ISBN : UVA:X030366125

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Analytical Advances in Forensic Science by Katie Maree Horsman Pdf

Duplex RT-PCR Assays For Rapid Detection,sorting Of Influenza Viruses

Author : Solomon Sudhakar Magapu,Joseph Kayyalakalayil David,Anish Somu
Publisher : LAP Lambert Academic Publishing
Page : 104 pages
File Size : 55,5 Mb
Release : 2013
Category : Electronic
ISBN : 3659344966

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Duplex RT-PCR Assays For Rapid Detection,sorting Of Influenza Viruses by Solomon Sudhakar Magapu,Joseph Kayyalakalayil David,Anish Somu Pdf

Future pandemic prevention from influenza virus type A strain (H1N1) 2009 in India require rapid and reliable testing of larger samples collected in year round at different geographical, environmental and social strata for novel strains and its differentiation from seasonal ones. In this study, a real-time Reverse Transcriptase PCR (RT-PCR) assay was used in multiplex for detecting Influenza A gene, Swine influenza H1 gene and human RNP gene, with normal PCR in singleplex for B viruses for 24 patient nasal swab samples, who were reporting with influenza like illness (ILI) from local clinic in Chennai and these patients showed low circulation of pandemic (H1N1) 2009 strain. KEYWORDS: Influenza, Nasal Swab, Real-Time PCR, RT-PCR, Swine Flu, (H1N1) 2009 Strain

Genome Research

Author : Anonim
Publisher : Unknown
Page : 1118 pages
File Size : 44,7 Mb
Release : 2003
Category : DNA polymerases
ISBN : UCLA:L0089103295

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Genome Research by Anonim Pdf

Gene Quantification

Author : Francois Ferre
Publisher : Springer Science & Business Media
Page : 379 pages
File Size : 46,5 Mb
Release : 2012-12-06
Category : Medical
ISBN : 9781461241645

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Gene Quantification by Francois Ferre Pdf

Geneticists and molecular biologists have been interested in quantifying genes and their products for many years and for various reasons (Bishop, 1974). Early molecular methods were based on molecular hybridization, and were devised shortly after Marmur and Doty (1961) first showed that denaturation of the double helix could be reversed - that the process of molecular reassociation was exquisitely sequence dependent. Gillespie and Spiegelman (1965) developed a way of using the method to titrate the number of copies of a probe within a target sequence in which the target sequence was fixed to a membrane support prior to hybridization with the probe - typically a RNA. Thus, this was a precursor to many of the methods still in use, and indeed under development, today. Early examples of the application of these methods included the measurement of the copy numbers in gene families such as the ribosomal genes and the immunoglo bulin family. Amplification of genes in tumors and in response to drug treatment was discovered by this method. In the same period, methods were invented for estimating gene num bers based on the kinetics of the reassociation process - the so-called Cot analysis. This method, which exploits the dependence of the rate of reassociation on the concentration of the two strands, revealed the presence of repeated sequences in the DNA of higher eukaryotes (Britten and Kohne, 1968). An adaptation to RNA, Rot analysis (Melli and Bishop, 1969), was used to measure the abundance of RNAs in a mixed population.

Principles and Technical Aspects of PCR Amplification

Author : Elizabeth van Pelt-Verkuil,Alex van Belkum,John P. Hays
Publisher : Springer Science & Business Media
Page : 330 pages
File Size : 41,8 Mb
Release : 2008-03-14
Category : Science
ISBN : 9781402062414

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Principles and Technical Aspects of PCR Amplification by Elizabeth van Pelt-Verkuil,Alex van Belkum,John P. Hays Pdf

Kary Mullis was awarded a Nobel Prize for inventing the PCR technique more than a decade ago in 1993. Since its "discovery", multiple adaptations and variations of the standard PCR technique have been described. This publication aims to provide the reader with a guide to the standard PCR technique and its many available variants, with particular emphasis being placed on the role of these PCR techniques in the clinical diagnostic laboratory (the central theme of this book).

RT-PCR Protocols

Author : Nicola King,Joe O’Connell
Publisher : Springer Science & Business Media
Page : 370 pages
File Size : 45,8 Mb
Release : 2008-02-04
Category : Science
ISBN : 9781592592838

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RT-PCR Protocols by Nicola King,Joe O’Connell Pdf

Until the mid 1980s, the detection and quantification of a specific mRNA was a difficult task, usually only undertaken by a skilled molecular biologist. With the advent of PCR, it became possible to amplify specific mRNA, after first converting the mRNA to cDNA via reverse transcriptase. The arrival of this technique—termed reverse transcription-PCR (RT-PCR)—meant that mRNA suddenly became amenable to rapid and sensitive analysis, without the need for advanced training in molecular biology. This new accessibility of mRNA, which has been facilitated by the rapid accumulation of sequence data for human mRNAs, means that every biomedical researcher can now include measurement of specific mRNA expression as a routine component of his/her research plans. In view of the ubiquity of the use of standard RT-PCR, the main objective of RT-PCR Protocols is essentially to provide novel, useful applications of RT-PCR. These include some useful adaptations and applications that could be relevant to the wider research community who are already familiar with the basic RT-PCR protocol. For example, a variety of different adaptations are described that have been employed to obtain quantitative data from RT-PCR. Quantitative RT-PCR provides the ability to accurately measure changes/imb- ances in specific mRNA expression between normal and diseased tissues.

MoneyBall Medicine

Author : Harry Glorikian,Malorye Allison Branca
Publisher : Taylor & Francis
Page : 591 pages
File Size : 53,6 Mb
Release : 2017-11-20
Category : Business & Economics
ISBN : 9781351984331

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MoneyBall Medicine by Harry Glorikian,Malorye Allison Branca Pdf

How can a smartwatch help patients with diabetes manage their disease? Why can’t patients find out prices for surgeries and other procedures before they happen? How can researchers speed up the decade-long process of drug development? How will "Precision Medicine" impact patient care outside of cancer? What can doctors, hospitals, and health systems do to ensure they are maximizing high-value care? How can healthcare entrepreneurs find success in this data-driven market? A revolution is transforming the $10 trillion healthcare landscape, promising greater transparency, improved efficiency, and new ways of delivering care. This new landscape presents tremendous opportunity for those who are ready to embrace the data-driven reality. Having the right data and knowing how to use it will be the key to success in the healthcare market in the future. We are already starting to see the impacts in drug development, precision medicine, and how patients with rare diseases are diagnosed and treated. Startups are launched every week to fill an unmet need and address the current problems in the healthcare system. Digital devices and artificial intelligence are helping doctors do their jobs faster and with more accuracy. MoneyBall Medicine: Thriving in the New Data-Driven Healthcare Market, which includes interviews with dozens of healthcare leaders, describes the business challenges and opportunities arising for those working in one of the most vibrant sectors of the world’s economy. Doctors, hospital administrators, health information technology directors, and entrepreneurs need to adapt to the changes effecting healthcare today in order to succeed in the new, cost-conscious and value-based environment of the future. The authors map out many of the changes taking place, describe how they are impacting everyone from patients to researchers to insurers, and outline some predictions for the healthcare industry in the years to come.

Pine Wilt Disease

Author : Bo Guang Zhao,Kazuyoshi Futai,Jack R. Sutherland,Yuko Takeuchi
Publisher : Springer Science & Business Media
Page : 486 pages
File Size : 42,5 Mb
Release : 2008-09-27
Category : Technology & Engineering
ISBN : 9784431756552

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Pine Wilt Disease by Bo Guang Zhao,Kazuyoshi Futai,Jack R. Sutherland,Yuko Takeuchi Pdf

Pine forests face a global threat of pine wilt disease, which is being spread by vector beetles carrying pathogenic nematodes from dead trees to healthy ones. Among the host pines there are varying degrees of susceptibility, and nematode strains also contain a variety of virulences, both of which factors help to determine whether infected host trees will die or survive. As well, biotic and abiotic environmental factors influence the fate of infected trees. This book describes the history of the disease, pathogenic nematodes, vector beetles, the etiology and ecology of the disease, microorganisms involved, and control methods that utilize host resistance and biological control agents. Concrete, comprehensive, and the most up-to-date knowledge about this worldwide forest epidemic is presented for readers, enabling them to understand the nature and epidemic threat of pine wilt disease.

PCR for Clinical Microbiology

Author : Ian W.J. Carter,Margret Schuller,Gregory S. James,Theo P. Sloots,Catriona L. Halliday
Publisher : Springer Science & Business Media
Page : 438 pages
File Size : 42,9 Mb
Release : 2010-07-03
Category : Science
ISBN : 9789048190393

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PCR for Clinical Microbiology by Ian W.J. Carter,Margret Schuller,Gregory S. James,Theo P. Sloots,Catriona L. Halliday Pdf

Not another textbook, but a valuable tool for doctors and microbiologists wanting to know how to set up a PCR diagnostic microbiology laboratory according to current regulatory standards and perform assays supplied with patient clinical diagnostic criteria and easy to follow protocols. Whether laboratories are using commercial kits or in-house methods developed in their own laboratories or adopted from published methods, all clinical microbiology laboratories need to be able to understand, critically evaluate, perform and interpret these tests according to rigorous and clinically appropriate standards and international guidelines. The cost and effort of development and evaluation of in-house tests is considerable and many laboratories do not have the resources to do so. This compendium is a vehicle to improve and maintain the clinical relevance and high quality of diagnostic PCR. It is a unique collection of; guidelines for PCR laboratory set up and quality control, test selection criteria, methods and detailed step by step protocols for a diagnostic assays in the field of molecular microbiology. The structure of the book provides the PCR fundamentals and describes the clinical aspects and diagnosis of infectious disease. This is followed by protocols divided into; bacteria, virus, fungi and parasites, and susceptibility screens. The inclusion of medical criteria and interpretation adds value to the compendium and benefits clinicians, scientists, researchers and students of clinical diagnostic microbiology

Molecular Forensics

Author : Ralph Rapley,David Whitehouse
Publisher : John Wiley & Sons
Page : 33 pages
File Size : 49,6 Mb
Release : 2007-05-21
Category : Science
ISBN : 9780470024959

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Molecular Forensics by Ralph Rapley,David Whitehouse Pdf

Molecular Forensics offers a comprehensive coverage of the increasingly important role that molecular analysis plays within forensic science. Starting with a broad introduction of modern forensic molecular technologies, the text covers key issues from the initial scenes of crime sampling to the use of evidential material in the prosecution of legal cases. The book also explores the questions raised by the growing debate on the applications of national DNA databases and the resulting challenges of developing, maintaining and curating such vast data structures. The broader range of applications to non-human cases is also discussed, as are the statistical pitfalls of using so-called unique data such as DNA profiles, and the ethical considerations of national DNA databases. An invaluable reference for students taking courses within the Forensic and Biomedical sciences, and also useful for practitioners in the field looking for a broad overview of the subject. Provides a comprehensive overview of modern forensic molecular technologies. Explores the growing debate on the applications of national DNA databases. Discusses the initial phases of investigation to the conclusion of cases involving molecular forensic analysis.

Foodborne Viral Pathogens

Author : Peter A. White,Natalie E. Netzler,Grant S. Hansman
Publisher : CRC Press
Page : 262 pages
File Size : 47,9 Mb
Release : 2016-11-25
Category : Science
ISBN : 9781315392288

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Foodborne Viral Pathogens by Peter A. White,Natalie E. Netzler,Grant S. Hansman Pdf

Viral transmission through contaminated food and water claims hundreds of thousands of lives every year, particularly affecting children in developing nations. Foodborne viral pathogens are associated with gastroenteritis and hepatitis, causing widespread epidemics that affect all populations and demographics worldwide. Foodborne Viral Pathogens comprehensively covers the predominant etiological viral agents of foodborne disease, including norovirus, hepatitis A virus, hepatitis E virus, astrovirus, sapovirus and rotavirus, and several emerging viruses and prions. By improving food safety awareness and viral detection, and through promotion of global food safety standards, our ability to cope with and control foodborne disease will be enhanced. Foodborne Viral Pathogens includes a detailed review of the molecular biology, potential vaccines, and available antiviral treatments of all major foodborne viral pathogens and prions. Written by specialists and leading virologists, this book features techniques used for typing, viral detection, strategies for control, and viral risk assessments. This book is intended as a detailed handbook for food microbiology and medical applications and will be a useful guide for anyone with an interest in foodborne disease.