Protein Conformational Dynamics

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Protein Conformational Dynamics

Author : Ke-li Han,Xin Zhang,Ming-jun Yang
Publisher : Springer Science & Business Media
Page : 488 pages
File Size : 43,5 Mb
Release : 2014-01-20
Category : Medical
ISBN : 9783319029702

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Protein Conformational Dynamics by Ke-li Han,Xin Zhang,Ming-jun Yang Pdf

This book discusses how biological molecules exert their function and regulate biological processes, with a clear focus on how conformational dynamics of proteins are critical in this respect. In the last decade, the advancements in computational biology, nuclear magnetic resonance including paramagnetic relaxation enhancement, and fluorescence-based ensemble/single-molecule techniques have shown that biological molecules (proteins, DNAs and RNAs) fluctuate under equilibrium conditions. The conformational and energetic spaces that these fluctuations explore likely contain active conformations that are critical for their function. More interestingly, these fluctuations can respond actively to external cues, which introduces layers of tight regulation on the biological processes that they dictate. A growing number of studies have suggested that conformational dynamics of proteins govern their role in regulating biological functions, examples of this regulation can be found in signal transduction, molecular recognition, apoptosis, protein / ion / other molecules translocation and gene expression. On the experimental side, the technical advances have offered deep insights into the conformational motions of a number of proteins. These studies greatly enrich our knowledge of the interplay between structure and function. On the theoretical side, novel approaches and detailed computational simulations have provided powerful tools in the study of enzyme catalysis, protein / drug design, protein / ion / other molecule translocation and protein folding/aggregation, to name but a few. This work contains detailed information, not only on the conformational motions of biological systems, but also on the potential governing forces of conformational dynamics (transient interactions, chemical and physical origins, thermodynamic properties). New developments in computational simulations will greatly enhance our understanding of how these molecules function in various biological events.

Protein Dynamics

Author : Dennis R. Livesay
Publisher : Humana
Page : 0 pages
File Size : 52,9 Mb
Release : 2016-08-23
Category : Science
ISBN : 1493963074

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Protein Dynamics by Dennis R. Livesay Pdf

In Protein Dynamics: Methods and Protocols, expert researchers in the field detail both experimental and computational methods to interrogate molecular level fluctuations. Chapters detail best-practice recipes covering both experimental and computational techniques, reflecting modern protein research. Written in the highly successful Methods in Molecular BiologyTM series format, chapters include introductions to their respective topics, lists of the necessary materials and reagents, step-by-step, readily reproducible laboratory protocols, and key tips on troubleshooting and avoiding known pitfalls. Authoritative and practical, Protein Dynamics: Methods and Protocols describes the most common and powerful methods used to characterize protein dynamics.

Conformational Dynamics of Large Protein Complexes

Author : David Haselbach
Publisher : Unknown
Page : 0 pages
File Size : 42,5 Mb
Release : 2014
Category : Electronic
ISBN : OCLC:931824110

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Conformational Dynamics of Large Protein Complexes by David Haselbach Pdf

Life on earth is only possible through the enormous capabilities of proteins and their assemblies. Which function a certain protein fulfills is encoded in its amino acid sequence, which gives rise to a defined structure. However, this structure is not static. The thermal energy of the surrounding medium forces the molecule into different conformations. It can be assumed that in most cases these movements play an important role for a protein's function. Therefore, it is crucial to gain high-resolution 3D information of those movements. For small proteins, Nuclear Magnetic Resonance (NMR) Exp ...

Protein Conformation

Author : Derek J. Chadwick,Kate Widdows
Publisher : John Wiley & Sons
Page : 282 pages
File Size : 42,7 Mb
Release : 2008-04-30
Category : Science
ISBN : 9780470514153

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Protein Conformation by Derek J. Chadwick,Kate Widdows Pdf

How the amino acid sequence of a protein determines its three-dimensional structure is a major problem in biology and chemistry. Leading experts in the fields of NMR spectroscopy, X-ray crystallography, protein engineering and molecular modeling offer provocative insights into current views on the protein folding problem and various aspects for future progress.

Computational Approaches to Protein Dynamics

Author : Monika Fuxreiter
Publisher : CRC Press
Page : 458 pages
File Size : 53,6 Mb
Release : 2014-12-24
Category : Science
ISBN : 9781482297867

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Computational Approaches to Protein Dynamics by Monika Fuxreiter Pdf

The Latest Developments on the Role of Dynamics in Protein FunctionsComputational Approaches to Protein Dynamics: From Quantum to Coarse-Grained Methods presents modern biomolecular computational techniques that address protein flexibility/dynamics at all levels of theory. An international contingent of leading researchers in chemistry, physics, an

Dynamics of Proteins and Nucleic Acids

Author : Anonim
Publisher : Elsevier
Page : 368 pages
File Size : 54,5 Mb
Release : 2013-08-14
Category : Science
ISBN : 9780124116276

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Dynamics of Proteins and Nucleic Acids by Anonim Pdf

Published continuously since 1944, Advances in Protein Chemistry and Structural Biology has been a continuous, essential resource for protein chemists. Covering reviews of methodology and research in all aspects of protein chemistry, including purification/expression, proteomics, modeling and structural determination and design, each volume brings forth new information about protocols and analysis of proteins while presenting the most recent findings from leading experts in a broad range of protein-related topics. Covers reviews of methodology and research in all aspects of protein chemistry Brings forth new information about protocols and analysis of proteins while presenting the most recent findings from leading experts in a broad range of protein-related topics

Understanding Protein Dynamics, Binding and Allostery for Drug Design

Author : Guang Hu,Pemra Doruker,Hongchun Li,Ebru Demet Akten
Publisher : Frontiers Media SA
Page : 276 pages
File Size : 51,7 Mb
Release : 2021-06-08
Category : Science
ISBN : 9782889668489

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Understanding Protein Dynamics, Binding and Allostery for Drug Design by Guang Hu,Pemra Doruker,Hongchun Li,Ebru Demet Akten Pdf

Amino Acids, Peptides and Proteins in Organic Chemistry, Analysis and Function of Amino Acids and Peptides

Author : Anonim
Publisher : John Wiley & Sons
Page : 508 pages
File Size : 43,7 Mb
Release : 2013-02-13
Category : Science
ISBN : 9783527631858

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Amino Acids, Peptides and Proteins in Organic Chemistry, Analysis and Function of Amino Acids and Peptides by Anonim Pdf

This is the last of five books in the Amino Acids, Peptidesand Proteins in Organic Synthesis series. Closing a gap in the literature, this is the only series tocover this important topic in organic and biochemistry. Drawingupon the combined expertise of the international "who's who" inamino acid research, these volumes represent a real benchmark foramino acid chemistry, providing a comprehensive discussion of theoccurrence, uses and applications of amino acids and, by extension,their polymeric forms, peptides and proteins. The practical value of each volume is heightened by theinclusion of experimental procedures. The 5 volumes cover the following topics: Volume 1: Origins and Synthesis of Amino Acids Volume 2: Modified Amino Acids, Organocatalysis and Enzymes Volume 3: Building Blocks, Catalysis and Coupling Chemistry Volume 4: Protection Reactions, Medicinal Chemistry,Combinatorial Synthesis Volume 5: Analysis and Function of Amino Acids and Peptides Volume 5 of this series presents a wealth of methods to analyzeamino acids and peptides. Classical approaches are described, suchas X-ray analysis, chromatographic methods, NMR, AFM, massspectrometry and 2D-gel electrophoresis, as well as newerapproaches, including Surface Plasmon Resonance and arraytechnologies. Originally planned as a six volume series, Amino Acids,Peptides and Proteins in Organic Chemistry now completes withfive volumes but remains comprehensive in both scope andcoverage. ahref="http://eu.wiley.com/WileyCDA/WileyTitle/productCd-3527335463.html"Furtherinformation about the 5 Volume Set and purchasing details can beviewed here./a

Advances in Protein Molecular and Structural Biology Methods

Author : Timir Tripathi,Vikash Kumar Dubey
Publisher : Academic Press
Page : 716 pages
File Size : 55,8 Mb
Release : 2022-01-14
Category : Science
ISBN : 9780323902656

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Advances in Protein Molecular and Structural Biology Methods by Timir Tripathi,Vikash Kumar Dubey Pdf

Advances in Protein Molecular and Structural Biology Methods offers a complete overview of the latest tools and methods applicable to the study of proteins at the molecular and structural level. The book begins with sections exploring tools to optimize recombinant protein expression and biophysical techniques such as fluorescence spectroscopy, NMR, mass spectrometry, cryo-electron microscopy, and X-ray crystallography. It then moves towards computational approaches, considering structural bioinformatics, molecular dynamics simulations, and deep machine learning technologies. The book also covers methods applied to intrinsically disordered proteins (IDPs)followed by chapters on protein interaction networks, protein function, and protein design and engineering. It provides researchers with an extensive toolkit of methods and techniques to draw from when conducting their own experimental work, taking them from foundational concepts to practical application. Presents a thorough overview of the latest and emerging methods and technologies for protein study Explores biophysical techniques, including nuclear magnetic resonance, X-ray crystallography, and cryo-electron microscopy Includes computational and machine learning methods Features a section dedicated to tools and techniques specific to studying intrinsically disordered proteins

Methods in Nano Cell Biology

Author : Anonim
Publisher : Academic Press
Page : 534 pages
File Size : 43,6 Mb
Release : 2008-12-11
Category : Science
ISBN : 9780080949109

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Methods in Nano Cell Biology by Anonim Pdf

Understanding live cells at the single molecule level is the most important and single major challenge facing biology and medicine today. Nanobiology focuses on the properties and structure of complex assemblies of biomolecules—biochips and molecular motors, for example—in conjunction with distinctive surfaces, rods, dots, and materials of nanoscience. Nano Cell Biology will describe the current applications of nanobiology to the study of the structure, function, and metabolic processes of cells. Provides historical background on this newly emerging field Covers the latest application of new instrumentation in the field Detailed protocols in the study of live cells at the nanometer level Discusses future technologies and their applications in the study of living cells

Proteins

Author : Charles L. Brooks,Martin Karplus,B. Montgomery Pettitt
Publisher : John Wiley & Sons
Page : 278 pages
File Size : 41,9 Mb
Release : 2009-09-08
Category : Science
ISBN : 9780470141816

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Proteins by Charles L. Brooks,Martin Karplus,B. Montgomery Pettitt Pdf

Presenting a wide-ranging view of current developments in protein research, the papers in this collection, each written by highly regarded experts in the field, examine various aspects of protein structure, functions, dynamics, and experimentation. Topics include dynamical simulation methods, the biological role of atom fluctuations, protein folding, influences on protein dynamics, and a variety of analytical techniques, such as X-ray diffraction, vibrational spectroscopy, photodissociation and rebinding kinetics. This is part of a series devoted to providing general information on a wide variety of topics in chemical physics in order to stimulate new research and to serve as a text for beginners in a particular area of chemical physics.