Tissue Phenomics Profiling Cancer Patients For Treatment Decisions

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Tissue Phenomics: Profiling Cancer Patients for Treatment Decisions

Gerd Binnig,Ralf Huss,Günter Schmidt
Tissue Phenomics Profiling Cancer Patients for Treatment Decisions Book PDF

Author : Gerd Binnig,Ralf Huss,Günter Schmidt
Publisher : CRC Press
Page : 224 pages
File Size : 50,9 Mb
Release : 2018-01-29
Category : Medical
ISBN : 9781351134262

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Tissue Phenomics: Profiling Cancer Patients for Treatment Decisions by Gerd Binnig,Ralf Huss,Günter Schmidt Pdf

In the age of digitization our society is transformed into a new state. In particular, machine intelligence dramatically elevates our capability to create and digest information. Naturally, healthcare is also impacted by this trend and will even be more transformed into a informatic driven discipline in the future. In the most important area of histo-pathology, the interpretation of tissue slices from cancer patients, informatics will have an early and huge impact on treatment decisions and probably will act as the leading discipline for this transformation in medicine. Tissue Phenomics provides a comprehensive methodology aiming at the discovery of the most accurate tissue-based decision support algorithm by close integration of assay development, image analysis and bioinformatics, and optimization feedback loops. In this book the methodology of Tissue Phenomics and its benefits and wealth’s are described. The different components of Tissue Phenomics are explained in the different chapters. In the chapters 2 to 4 of this book different authors describe various approaches on how to convert the wealth of tissue slide pixel data into mineable information using knowledge-based and data-driven image analysis methods. Subsequently, the datafication of images and the bioinformatics part plays a crucial role in generating prognostic and predictive models for disease progression. The integration of other data sources such as genomics, radiomics and patient related information is also important and is described as well. As discussed in chapters 5 and 6, these models may classify patients in distinct groups such as those responding to a given therapy. Since Tissue Phenomics provides a huge set of potentially prognostic features (phenes), one focus of both chapters is robust feature selection methods by advanced Monte-Carlo cross validation algorithms. In chapter 7 we discuss multiple application examples of Tissue Phenomics in academic and commercial settings and its tremendous impact to advances in biomedical sciences. Building on the successes in research, chapters 8 and 9 discuss applications in clinical environments and provide a flavor to the future envision in chapter 10, where tissue datafication and subsequent patient profiling is part of every routine examination, with the goal to best match patients with the most successful therapy, as predicted by tissue phenes.

Precision Cancer Medicine

Bharat Jasani,Ralf Huss,Clive R. Taylor
Precision Cancer Medicine Book PDF

Author : Bharat Jasani,Ralf Huss,Clive R. Taylor
Publisher : Springer Nature
Page : 239 pages
File Size : 40,9 Mb
Release : 2022-01-04
Category : Medical
ISBN : 9783030840877

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Precision Cancer Medicine by Bharat Jasani,Ralf Huss,Clive R. Taylor Pdf

This book describes the changing role of pathology in aiding reproducible and accurate patient selection for predictive cancer therapy. Particular attention is given to the clinical application of cutting-edge cancer biomarkers to accurately select patients for targeted cancer therapy and how artificial intelligence can improve the precision of treatments. The advent and basis of predictive cancer care, the role of pathologists in translational cancer research, the analysis of cancer samples, the management of biopsy results, and the accuracy of biopsy results are also discussed. Precision Cancer Medicine: Role of the Pathologist details how pathologists can use the latest biomarkers and apply artificial intelligence technology in cancer diagnosis and management. It is also relevant to oncologists and medical practitioners involved in cancer management seeking an up-to-date resource on the topic.

Artificial Intelligence Applications In Human Pathology

Ralf Huss,Michael Grunkin
Artificial Intelligence Applications In Human Pathology Book PDF

Author : Ralf Huss,Michael Grunkin
Publisher : World Scientific
Page : 337 pages
File Size : 43,6 Mb
Release : 2022-03-04
Category : Science
ISBN : 9781800611405

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Artificial Intelligence Applications In Human Pathology by Ralf Huss,Michael Grunkin Pdf

Artificial Intelligence Applications in Human Pathology deals with the latest topics in biomedical research and clinical cancer diagnostics. With chapters provided by true international experts in the field, this book gives real examples of the implementation of AI and machine learning in human pathology.Advances in machine learning and AI in general have propelled computational and general pathology research. Today, computer systems approach the diagnostic levels achieved by humans for certain well-defined tasks in pathology. At the same time, pathologists are faced with an increased workload both quantitatively (numbers of cases) and qualitatively (the amount of work per case, with increasing treatment options and the type of data delivered by pathologists also expected to become more fine-grained). AI will support and leverage mathematical tools and implement data-driven methods as a center for data interpretation in modern tissue diagnosis and pathology. Digital or computational pathology will also foster the training of future computational pathologists, those with both pathology and non-pathology backgrounds, who will eventually decide that AI-based pathology will serve as an indispensable hub for data-related research in a global health care system.Some of the specific topics explored within include an introduction to DL as applied to Pathology, Standardized Tissue Sampling for Automated Analysis, integrating Computational Pathology into Histopathology workflows. Readers will also find examples of specific techniques applied to specific diseases that will aid their research and treatments including but not limited to; Tissue Cartography for Colorectal Cancer, Ki-67 Measurements in Breast Cancer, and Light-Sheet Microscopy as applied to Virtual Histology.The key role for pathologists in tissue diagnostics will prevail and even expand through interdisciplinary work and the intuitive use of an advanced and interoperating (AI-supported) pathology workflow delivering novel and complex features that will serve the understanding of individual diseases and of course the patient.

Digital Medicine

Ralf Huss
Digital Medicine Book PDF

Author : Ralf Huss
Publisher : CRC Press
Page : 576 pages
File Size : 53,5 Mb
Release : 2023-06-09
Category : Medical
ISBN : 9781000868975

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Digital Medicine by Ralf Huss Pdf

This book provides an introduction into the field of digital medicine, its wide spectrum of current clinical applications, and the future practice of medicine. With "digital health" and "digital medicine" at its core, it focuses on the combination of therapeutics with modern hard- and software solutions, including artificial intelligence and advanced diagnostic technologies such as augmented imaging and ingestible or wearable (nano)sensors, to provide best patient care. In the four parts of this book, experts in the field have authored use cases and guiding principles on the visualization of patient data analytics and clinical decision support tools, including robotic-guided interventions, as well as nursing research along with palliative and inpatient care. The book also provides examples of "digital medicine" from almost all clinical disciplines together with technical and e-learning solutions.

The Era of Artificial Intelligence, Machine Learning, and Data Science in the Pharmaceutical Industry

Stephanie K. Ashenden
The Era of Artificial Intelligence Machine Learning and Data Science in the Pharmaceutical Industry Book PDF

Author : Stephanie K. Ashenden
Publisher : Academic Press
Page : 266 pages
File Size : 50,6 Mb
Release : 2021-04-23
Category : Computers
ISBN : 9780128204498

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The Era of Artificial Intelligence, Machine Learning, and Data Science in the Pharmaceutical Industry by Stephanie K. Ashenden Pdf

The Era of Artificial Intelligence, Machine Learning and Data Science in the Pharmaceutical Industry examines the drug discovery process, assessing how new technologies have improved effectiveness. Artificial intelligence and machine learning are considered the future for a wide range of disciplines and industries, including the pharmaceutical industry. In an environment where producing a single approved drug costs millions and takes many years of rigorous testing prior to its approval, reducing costs and time is of high interest. This book follows the journey that a drug company takes when producing a therapeutic, from the very beginning to ultimately benefitting a patient’s life. This comprehensive resource will be useful to those working in the pharmaceutical industry, but will also be of interest to anyone doing research in chemical biology, computational chemistry, medicinal chemistry and bioinformatics. Demonstrates how the prediction of toxic effects is performed, how to reduce costs in testing compounds, and its use in animal research Written by the industrial teams who are conducting the work, showcasing how the technology has improved and where it should be further improved Targets materials for a better understanding of techniques from different disciplines, thus creating a complete guide

Human Genetics and Genomics

Bruce R. Korf,Mira B. Irons
Human Genetics and Genomics Book PDF

Author : Bruce R. Korf,Mira B. Irons
Publisher : John Wiley & Sons
Page : 280 pages
File Size : 40,6 Mb
Release : 2012-11-19
Category : Medical
ISBN : 9781118537664

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Human Genetics and Genomics by Bruce R. Korf,Mira B. Irons Pdf

This fourth edition of the best-selling textbook, Human Genetics and Genomics, clearly explains the key principles needed by medical and health sciences students, from the basis of molecular genetics, to clinical applications used in the treatment of both rare and common conditions. A newly expanded Part 1, Basic Principles of Human Genetics, focuses on introducing the reader to key concepts such as Mendelian principles, DNA replication and gene expression. Part 2, Genetics and Genomics in Medical Practice, uses case scenarios to help you engage with current genetic practice. Now featuring full-color diagrams, Human Genetics and Genomics has been rigorously updated to reflect today’s genetics teaching, and includes updated discussion of genetic risk assessment, “single gene” disorders and therapeutics. Key learning features include: Clinical snapshots to help relate science to practice ‘Hot topics’ boxes that focus on the latest developments in testing, assessment and treatment ‘Ethical issues’ boxes to prompt further thought and discussion on the implications of genetic developments ‘Sources of information’ boxes to assist with the practicalities of clinical research and information provision Self-assessment review questions in each chapter Accompanied by the Wiley E-Text digital edition (included in the price of the book), Human Genetics and Genomics is also fully supported by a suite of online resources at www.korfgenetics.com, including: Factsheets on 100 genetic disorders, ideal for study and exam preparation Interactive Multiple Choice Questions (MCQs) with feedback on all answers Links to online resources for further study Figures from the book available as PowerPoint slides, ideal for teaching purposes The perfect companion to the genetics component of both problem-based learning and integrated medical courses, Human Genetics and Genomics presents the ideal balance between the bio-molecular basis of genetics and clinical cases, and provides an invaluable overview for anyone wishing to engage with this fast-moving discipline.

Textbook of Personalized Medicine

Kewal K. Jain
Textbook of Personalized Medicine Book PDF

Author : Kewal K. Jain
Publisher : Humana Press
Page : 762 pages
File Size : 51,7 Mb
Release : 2015-03-17
Category : Medical
ISBN : 9781493925537

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Textbook of Personalized Medicine by Kewal K. Jain Pdf

Advances in the technology used in personalized medicine and increased applications for clinical use have created a need for this expansion and revision of Kewal K. Jain’s Textbook of Personalized Medicine. As the first definitive work on this topic, this book reviews the fundamentals and development of personalized medicine and subsequent adoptions of the concepts by the biopharmaceutical industry and the medical profession. It also discusses examples of applications in key therapeutic areas, as well as ethical and regulatory issues, providing a concise and comprehensive source of reference for those involved in healthcare management, planning and politics. Algorithms are included as a guide to those involved in the management of important diseases where decision-making is involved due to the multiple choices available. Textbook of Personalized Medicine, Second Edition will serve as a convenient source of information for physicians, scientists, decision makers in the biopharmaceutical and healthcare industries and interested members of the public.

Epigenetics and Metabolomics

Paban K. Agrawala,Poonam Rana
Epigenetics and Metabolomics Book PDF

Author : Paban K. Agrawala,Poonam Rana
Publisher : Elsevier
Page : 478 pages
File Size : 46,6 Mb
Release : 2021-08-25
Category : Medical
ISBN : 9780323856539

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Epigenetics and Metabolomics by Paban K. Agrawala,Poonam Rana Pdf

Epigenetics and Metabolomics, a new volume in the Translational Epigenetics series, offers a synthesized discussion of epigenetic control of metabolic activity, and systems-based approaches for better understanding these mechanisms. Over a dozen chapter authors provide an overview of epigenetics in translational medicine and metabolomics techniques, followed by analyses of epigenetic and metabolomic linkage mechanisms likely to result in effective identification of disease biomarkers, as well as new therapies targeting the removal of the inappropriate epigenetic alterations. Epigenetic interventions in cancer, brain damage, and neuroendocrine disease, among other disorders, are discussed in-depth, with an emphasis on exploring next steps for clinical translation and personalized healthcare. Offers a synthesized discussion of epigenetic regulation of metabolic activity and systems-based approaches to power new research Discusses epigenetic control of metabolic pathways and possible therapeutic targets for cancer, neurodegenerative, and neuroendocrine diseases, among others Provides guidance in epigenomics and metabolomic research methodology

Decision Forests for Computer Vision and Medical Image Analysis

Antonio Criminisi,J Shotton
Decision Forests for Computer Vision and Medical Image Analysis Book PDF

Author : Antonio Criminisi,J Shotton
Publisher : Springer Science & Business Media
Page : 367 pages
File Size : 55,5 Mb
Release : 2013-01-30
Category : Computers
ISBN : 9781447149293

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Decision Forests for Computer Vision and Medical Image Analysis by Antonio Criminisi,J Shotton Pdf

This practical and easy-to-follow text explores the theoretical underpinnings of decision forests, organizing the vast existing literature on the field within a new, general-purpose forest model. Topics and features: with a foreword by Prof. Y. Amit and Prof. D. Geman, recounting their participation in the development of decision forests; introduces a flexible decision forest model, capable of addressing a large and diverse set of image and video analysis tasks; investigates both the theoretical foundations and the practical implementation of decision forests; discusses the use of decision forests for such tasks as classification, regression, density estimation, manifold learning, active learning and semi-supervised classification; includes exercises and experiments throughout the text, with solutions, slides, demo videos and other supplementary material provided at an associated website; provides a free, user-friendly software library, enabling the reader to experiment with forests in a hands-on manner.

Radiomics and Radiogenomics in Neuro-oncology

Hassan Mohy-ud-Din,Saima Rathore
Radiomics and Radiogenomics in Neuro oncology Book PDF

Author : Hassan Mohy-ud-Din,Saima Rathore
Publisher : Springer Nature
Page : 100 pages
File Size : 42,8 Mb
Release : 2020-02-24
Category : Computers
ISBN : 9783030401245

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Radiomics and Radiogenomics in Neuro-oncology by Hassan Mohy-ud-Din,Saima Rathore Pdf

This book constitutes the proceedings of the First International Workshop on Radiomics and Radiogenomics in Neuro-oncology, RNO-AI 2019, which was held in conjunction with MICCAI in Shenzhen, China, in October 2019. The 10 full papers presented in this volume were carefully reviewed and selected from 15 submissions. They deal with the development of tools that can automate the analysis and synthesis of neuro-oncologic imaging.

Translational Research in Breast Cancer

Dong-Young Noh,Wonshik Han,Masakazu Toi
Translational Research in Breast Cancer Book PDF

Author : Dong-Young Noh,Wonshik Han,Masakazu Toi
Publisher : Springer Nature
Page : 630 pages
File Size : 44,9 Mb
Release : 2021-05-13
Category : Medical
ISBN : 9789813296206

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Translational Research in Breast Cancer by Dong-Young Noh,Wonshik Han,Masakazu Toi Pdf

This book describes recent advances in translational research in breast cancer and presents emerging applications of this research that promise to have meaningful impacts on diagnosis and treatment. It introduces ideas and materials derived from the clinic that have been brought to "the bench" for basic research, as well as findings that have been applied back to "the bedside". Detailed attention is devoted to breast cancer biology and cell signaling pathways and to cancer stem cell and tumor heterogeneity in breast cancer. Various patient-derived research models are discussed, and a further focus is the role of biomarkers in precision medicine for breast cancer patients. Next-generation clinical research receives detailed attention, addressing the increasingly important role of big data in breast cancer research and a wide range of other emerging developments. An entire section is also devoted to the management of women with high-risk breast cancer. Translational Research in Breast Cancer will help clinicians and scientists to optimize their collaboration in order to achieve the common goal of conquering breast cancer.

Gene Quantification

Francois Ferre
Gene Quantification Book PDF

Author : Francois Ferre
Publisher : Springer Science & Business Media
Page : 379 pages
File Size : 48,9 Mb
Release : 2012-12-06
Category : Medical
ISBN : 9781461241645

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Gene Quantification by Francois Ferre Pdf

Geneticists and molecular biologists have been interested in quantifying genes and their products for many years and for various reasons (Bishop, 1974). Early molecular methods were based on molecular hybridization, and were devised shortly after Marmur and Doty (1961) first showed that denaturation of the double helix could be reversed - that the process of molecular reassociation was exquisitely sequence dependent. Gillespie and Spiegelman (1965) developed a way of using the method to titrate the number of copies of a probe within a target sequence in which the target sequence was fixed to a membrane support prior to hybridization with the probe - typically a RNA. Thus, this was a precursor to many of the methods still in use, and indeed under development, today. Early examples of the application of these methods included the measurement of the copy numbers in gene families such as the ribosomal genes and the immunoglo bulin family. Amplification of genes in tumors and in response to drug treatment was discovered by this method. In the same period, methods were invented for estimating gene num bers based on the kinetics of the reassociation process - the so-called Cot analysis. This method, which exploits the dependence of the rate of reassociation on the concentration of the two strands, revealed the presence of repeated sequences in the DNA of higher eukaryotes (Britten and Kohne, 1968). An adaptation to RNA, Rot analysis (Melli and Bishop, 1969), was used to measure the abundance of RNAs in a mixed population.

Medical Image Computing and Computer-Assisted Intervention -- MICCAI 2004

Christian Barillot,David R. Haynor,Joao Falcao e Cunha,Pierre Hellier
Medical Image Computing and Computer Assisted Intervention MICCAI 2004 Book PDF

Author : Christian Barillot,David R. Haynor,Joao Falcao e Cunha,Pierre Hellier
Publisher : Springer
Page : 934 pages
File Size : 47,6 Mb
Release : 2004-09-17
Category : Medical
ISBN : 3540229760

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Medical Image Computing and Computer-Assisted Intervention -- MICCAI 2004 by Christian Barillot,David R. Haynor,Joao Falcao e Cunha,Pierre Hellier Pdf

The 7th International Conference on Medical Imaging and Computer Assisted Intervention, MICCAI 2004, was held in Saint-Malo, Brittany, France at the “Palais du Grand Large” conference center, September 26–29, 2004. The p- posaltohostMICCAI2004wasstronglyencouragedandsupportedbyIRISA, Rennes. IRISA is a publicly funded national research laboratory with a sta? of 370,including150full-timeresearchscientistsorteachingresearchscientistsand 115 postgraduate students. INRIA, the CNRS, and the University of Rennes 1 are all partners in this mixed research unit, and all three organizations were helpful in supporting MICCAI. MICCAI has become a premier international conference with in-depth - pers on the multidisciplinary ?elds of medical image computing, comput- assisted intervention and medical robotics. The conference brings together cl- icians, biological scientists, computer scientists, engineers, physicists and other researchers and o?ers them a forum to exchange ideas in these exciting and rapidly growing ?elds. The impact of MICCAI increases each year and the quality and quantity of submitted papers this year was very impressive. We received a record 516 full submissions (8 pages in length) and 101 short communications (2 pages) from 36 di?erent countries and 5 continents (see ?gures below). All submissions were reviewed by up to 4 external reviewers from the Scienti?c Review C- mittee and a primary reviewer from the Program Committee. All reviews were then considered by the MICCAI 2004 Program Committee, resulting in the acceptance of 235 full papers and 33 short communications.

Molecular Genetic Pathology

Liang Cheng,David Y. Zhang,John N. Eble
Molecular Genetic Pathology Book PDF

Author : Liang Cheng,David Y. Zhang,John N. Eble
Publisher : Springer
Page : 1136 pages
File Size : 54,7 Mb
Release : 2013-03-05
Category : Medical
ISBN : 1461447992

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Molecular Genetic Pathology by Liang Cheng,David Y. Zhang,John N. Eble Pdf

Molecular Genetic Pathology, Second Edition presents up-to-date material containing fundamental information relevant to the clinical practice of molecular genetic pathology. Fully updated in each area and expanded to include identification of new infectious agents (H1N1), new diagnostic biomarkers and biomarkers for targeted cancer therapy. This edition is also expanded to include the many new technologies that have become available in the past few years such as microarray (AmpliChip) and high throughput deep sequencing, which will certainly change the clinical practice of molecular genetic pathology. Part I examines the clinical aspects of molecular biology and technology, genomics. Poharmacogenomics and proteomics, while Part II covers the clinically relevant information of medical genetics, hematology, transfusion medicine, oncology, and forensic pathology. Supplemented with many useful figures and presented in a helpful bullet-point format, Molecular Genetic Pathology, Second Edition provides a unique reference for practicing pathologists, oncologists, internists, and medical genetisists. Furthermore, a book with concise overview of the field and highlights of clinical applications will certainly help those trainees, including pathology residents, genetics residents, molecular pathology fellows, internists, hematology/oncology fellows, and medical technologists in preparing for their board examination/certification.

Plant Metabolomics

Kazuki Saito,Richard A. Dixon,Lothar Willmitzer
Plant Metabolomics Book PDF

Author : Kazuki Saito,Richard A. Dixon,Lothar Willmitzer
Publisher : Springer Science & Business Media
Page : 351 pages
File Size : 46,6 Mb
Release : 2006-06-29
Category : Science
ISBN : 9783540297826

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Plant Metabolomics by Kazuki Saito,Richard A. Dixon,Lothar Willmitzer Pdf

Metabolomics – which deals with all metabolites of an organism – is a rapidly-emerging sector of post-genome research fields. It plays significant roles in a variety of fields from medicine to agriculture and holds a fundamental position in functional genomics studies and their application in plant biotechnology. This volume comprehensively covers plant metabolomics for the first time. The chapters offer cutting-edge information on analytical technology, bioinformatics and applications. They were all written by leading researchers who have been directly involved in plant metabolomics research throughout the world. Up-to-date information and future developments are described, thereby producing a volume which is a landmark of plant metabolomics research and a beneficial guideline to graduate students and researchers in academia, industry, and technology transfer organizations in all plant science fields.