Mathematical Methods For Protein Structure Analysis And Design

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Mathematical Methods for Protein Structure Analysis and Design

Concettina Guerra,Sorin Istrail
Mathematical Methods for Protein Structure Analysis and Design Book PDF

Author : Concettina Guerra,Sorin Istrail
Publisher : Springer Science & Business Media
Page : 161 pages
File Size : 48,6 Mb
Release : 2003-06-25
Category : Mathematics
ISBN : 9783540401049

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Mathematical Methods for Protein Structure Analysis and Design by Concettina Guerra,Sorin Istrail Pdf

The papers collected in this volume reproduce contributions by leading sch- arstoaninternationalschoolandworkshopwhichwasorganizedandheldwith thegoaloftakinga snapshotofadiscipline undertumultuous growth. Indeed, the area of protein folding, docking and alignment is developing in response to needs for a mix of heterogeneous expertise spanning biology, chemistry, mathematics, computer science, and statistics, among others. Some of the problems encountered in this area are not only important for the scienti?c challenges they pose, but also for the opportunities they disclose intermsofmedicalandindustrialexploitation. Atypicalexampleiso?eredby protein-drug interaction (docking), a problem posing daunting computational problems at the crossroads of geometry, physics and chemistry, and, at the same time, a problem with unimaginable implications for the pharmacopoeia of the future. The schoolfocused on problems posed by the study of the mechanisms - hind protein folding, and explored di?erent ways of attacking these problems under objective evaluations of the methods. Together with a relatively small core of consolidated knowledge and tools, important re?ections were brought to this e?ort by studies in a multitude of directions and approaches. It is obviously impossible to predict which, if any, among these techniques will prove completely successful, but it is precisely the implicit dialectic among them that best conveys the current ?avor of the ?eld. Such unique diversity and richness inspired the format of the meeting, and also explains the slight departure of the present volume from the typical format in this series: the exposition of the current sediment is complemented here by a selection of quali?ed specialized contributions.

Mathematical Methods for Protein Structure Analysis and Design

Concettina Guerra,Sorin Istrail
Mathematical Methods for Protein Structure Analysis and Design Book PDF

Author : Concettina Guerra,Sorin Istrail
Publisher : Springer
Page : 157 pages
File Size : 49,5 Mb
Release : 2014-03-12
Category : Mathematics
ISBN : 3662192888

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Mathematical Methods for Protein Structure Analysis and Design by Concettina Guerra,Sorin Istrail Pdf

The papers collected in this volume reproduce contributions by leading sch- arstoaninternationalschoolandworkshopwhichwasorganizedandheldwith thegoaloftakinga snapshotofadiscipline undertumultuous growth. Indeed, the area of protein folding, docking and alignment is developing in response to needs for a mix of heterogeneous expertise spanning biology, chemistry, mathematics, computer science, and statistics, among others. Some of the problems encountered in this area are not only important for the scienti?c challenges they pose, but also for the opportunities they disclose intermsofmedicalandindustrialexploitation. Atypicalexampleiso?eredby protein-drug interaction (docking), a problem posing daunting computational problems at the crossroads of geometry, physics and chemistry, and, at the same time, a problem with unimaginable implications for the pharmacopoeia of the future. The schoolfocused on problems posed by the study of the mechanisms - hind protein folding, and explored di?erent ways of attacking these problems under objective evaluations of the methods. Together with a relatively small core of consolidated knowledge and tools, important re?ections were brought to this e?ort by studies in a multitude of directions and approaches. It is obviously impossible to predict which, if any, among these techniques will prove completely successful, but it is precisely the implicit dialectic among them that best conveys the current ?avor of the ?eld. Such unique diversity and richness inspired the format of the meeting, and also explains the slight departure of the present volume from the typical format in this series: the exposition of the current sediment is complemented here by a selection of quali?ed specialized contributions.

Mathematical Methods for Protein Structure Analysis and Design

Concettina Guerra,Sorin Istrail
Mathematical Methods for Protein Structure Analysis and Design Book PDF

Author : Concettina Guerra,Sorin Istrail
Publisher : Springer
Page : 157 pages
File Size : 55,8 Mb
Release : 2004-04-16
Category : Mathematics
ISBN : 9783540448273

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Mathematical Methods for Protein Structure Analysis and Design by Concettina Guerra,Sorin Istrail Pdf

The papers collected in this volume reproduce contributions by leading sch- arstoaninternationalschoolandworkshopwhichwasorganizedandheldwith thegoaloftakinga snapshotofadiscipline undertumultuous growth. Indeed, the area of protein folding, docking and alignment is developing in response to needs for a mix of heterogeneous expertise spanning biology, chemistry, mathematics, computer science, and statistics, among others. Some of the problems encountered in this area are not only important for the scienti?c challenges they pose, but also for the opportunities they disclose intermsofmedicalandindustrialexploitation. Atypicalexampleiso?eredby protein-drug interaction (docking), a problem posing daunting computational problems at the crossroads of geometry, physics and chemistry, and, at the same time, a problem with unimaginable implications for the pharmacopoeia of the future. The schoolfocused on problems posed by the study of the mechanisms - hind protein folding, and explored di?erent ways of attacking these problems under objective evaluations of the methods. Together with a relatively small core of consolidated knowledge and tools, important re?ections were brought to this e?ort by studies in a multitude of directions and approaches. It is obviously impossible to predict which, if any, among these techniques will prove completely successful, but it is precisely the implicit dialectic among them that best conveys the current ?avor of the ?eld. Such unique diversity and richness inspired the format of the meeting, and also explains the slight departure of the present volume from the typical format in this series: the exposition of the current sediment is complemented here by a selection of quali?ed specialized contributions.

Theory and Mathematical Methods in Bioinformatics

Shiyi Shen
Theory and Mathematical Methods in Bioinformatics Book PDF

Author : Shiyi Shen
Publisher : Springer Science & Business Media
Page : 450 pages
File Size : 45,8 Mb
Release : 2008-01-26
Category : Science
ISBN : 9783540748915

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Theory and Mathematical Methods in Bioinformatics by Shiyi Shen Pdf

This monograph addresses, in a systematic and pedagogical manner, the mathematical methods and the algorithms required to deal with the molecularly based problems of bioinformatics. Prominent attention is given to pair-wise and multiple sequence alignment algorithms, stochastic models of mutations, modulus structure theory and protein configuration analysis. Strong links to the molecular structures of proteins, DNA and other biomolecules and their analyses are developed.

Computational Methods for Protein Structure Prediction and Modeling

Ying Xu,Dong Xu,Jie Liang
Computational Methods for Protein Structure Prediction and Modeling Book PDF

Author : Ying Xu,Dong Xu,Jie Liang
Publisher : Springer Science & Business Media
Page : 408 pages
File Size : 42,6 Mb
Release : 2007-08-24
Category : Science
ISBN : 9780387683720

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Computational Methods for Protein Structure Prediction and Modeling by Ying Xu,Dong Xu,Jie Liang Pdf

Volume One of this two-volume sequence focuses on the basic characterization of known protein structures, and structure prediction from protein sequence information. Eleven chapters survey of the field, covering key topics in modeling, force fields, classification, computational methods, and structure prediction. Each chapter is a self contained review covering definition of the problem and historical perspective; mathematical formulation; computational methods and algorithms; performance results; existing software; strengths, pitfalls, challenges, and future research.

Reviews in Computational Chemistry, Volume 22

Kenny B. Lipkowitz,Thomas R. Cundari,Valerie J. Gillet,Donald B. Boyd
Reviews in Computational Chemistry Volume 22 Book PDF

Author : Kenny B. Lipkowitz,Thomas R. Cundari,Valerie J. Gillet,Donald B. Boyd
Publisher : John Wiley & Sons
Page : 391 pages
File Size : 52,7 Mb
Release : 2006-02-10
Category : Science
ISBN : 9780471780359

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Reviews in Computational Chemistry, Volume 22 by Kenny B. Lipkowitz,Thomas R. Cundari,Valerie J. Gillet,Donald B. Boyd Pdf

FROM REVIEWS OF THE SERIES "Reviews in Computational Chemistry remains the most valuable reference to methods and techniques in computational chemistry." -JOURNAL OF MOLECULAR GRAPHICS AND MODELLING "One cannot generally do better than to try to find an appropriate article in the highly successful Reviews in Computational Chemistry. The basic philosophy of the editors seems to be to help the authors produce chapters that are complete, accurate, clear, and accessible to experimentalists (in particular) and other nonspecialists (in general)." -JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Protein Engineering and Design

Sheldon J. Park,Jennifer R. Cochran
Protein Engineering and Design Book PDF

Author : Sheldon J. Park,Jennifer R. Cochran
Publisher : CRC Press
Page : 434 pages
File Size : 47,8 Mb
Release : 2009-09-25
Category : Medical
ISBN : 9781420076592

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Protein Engineering and Design by Sheldon J. Park,Jennifer R. Cochran Pdf

Experimental protein engineering and computational protein design are broad but complementary strategies for developing proteins with altered or novel structural properties and biological functions. By describing cutting-edge advances in both of these fields, Protein Engineering and Design aims to cultivate a synergistic approach to protein science

Methods in Protein Design

Anonim
Methods in Protein Design Book PDF

Author : Anonim
Publisher : Academic Press
Page : 520 pages
File Size : 41,9 Mb
Release : 2013-02-14
Category : Science
ISBN : 9780123946294

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Methods in Protein Design by Anonim Pdf

This new volume of Methods in Enzymology continues the legacy of this premier serial by containing quality chapters authored by leaders in the field. This volume covers methods in protein design and it has chapters on such topics as protein switch engineering by domain insertion, evolution based design of proteins, and computationally designed proteins. Continues the legacy of this premier serial with quality chapters authored by leaders in the field Covers methods in protein design Contains chapters with such topics as protein switch engineering by domain insertion, evolution-based design of proteins, and computationally designed proteins

Protein Geometry, Classification, Topology and Symmetry

William R. Taylor,Andras Aszodi
Protein Geometry Classification Topology and Symmetry Book PDF

Author : William R. Taylor,Andras Aszodi
Publisher : CRC Press
Page : 348 pages
File Size : 49,6 Mb
Release : 2004-10-01
Category : Science
ISBN : 9781420033632

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Protein Geometry, Classification, Topology and Symmetry by William R. Taylor,Andras Aszodi Pdf

Using a geometric perspective, Protein Geometry, Classification, Topology, and Symmetry reviews and analyzes the structural principals of proteins with the goal of revealing the underlying regularities in their construction. It also reviews computer methods for structure analysis and the automatic comparison and classification of these structures with an analysis of the statistical significance of comparing different shapes. Following an analysis of the current state of protein classification, the authors explore more abstract geometric and topological representations, including the occurrence of knotted topologies. The book concludes with a consideration of the origin of higher-level symmetries in protein structure. The authors focus on simple geometric methods that are deterministic rather than probabilistic and on the more abstract simplifications of protein structure that allow a better understanding of the overall fold of the structure. Most of the methods described in this book have corresponding computer programs. These can be found (as C source code) at the ftp site of the Division of Mathematical Biology at the National Institute for Medical Research. This collection of ideas contains pedagogical material that make it ideal for post-graduate courses as well as new ideas and results essential for researchers investigating protein structures.

Theory and Applications of Models of Computation

Jin-Yi Cai,Barry S. Cooper,Angsheng Li
Theory and Applications of Models of Computation Book PDF

Author : Jin-Yi Cai,Barry S. Cooper,Angsheng Li
Publisher : Springer
Page : 800 pages
File Size : 48,8 Mb
Release : 2006-05-05
Category : Computers
ISBN : 9783540340225

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Theory and Applications of Models of Computation by Jin-Yi Cai,Barry S. Cooper,Angsheng Li Pdf

This book constitutes the refereed proceedings of the Third International Conference on Theory and Applications of Models of Computation, TAMC 2006, held in Beijing, China, in May 2006. The 75 revised full papers presented together with 7 plenary talks were carefully reviewed and selected from 319 submissions. All major areas in computer science, mathematics (especially logic) and the physical sciences particularly with regard to computation and computability theory are addressed.

Research in Computational Molecular Biology

Alberto Apostolico,Concettina Guerra,Sorin Istrail,Pavel Pevzner,Michael Waterman
Research in Computational Molecular Biology Book PDF

Author : Alberto Apostolico,Concettina Guerra,Sorin Istrail,Pavel Pevzner,Michael Waterman
Publisher : Springer
Page : 614 pages
File Size : 47,8 Mb
Release : 2006-08-12
Category : Computers
ISBN : 9783540332961

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Research in Computational Molecular Biology by Alberto Apostolico,Concettina Guerra,Sorin Istrail,Pavel Pevzner,Michael Waterman Pdf

This volume contains the papers presented at the 10th Annual International Conference on Research in Computational Molecular Biology (RECOMB 2006), which was held in Venice, Italy, on April 2–5, 2006

Theory And Mathematical Methods For Bioinformatics, 1/e

Shen,Jack A Tuszynski,Shiyi
Theory And Mathematical Methods For Bioinformatics 1 e Book PDF

Author : Shen,Jack A Tuszynski,Shiyi
Publisher : Unknown
Page : 128 pages
File Size : 41,5 Mb
Release : 2010-12-01
Category : Electronic
ISBN : 8184896255

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Theory And Mathematical Methods For Bioinformatics, 1/e by Shen,Jack A Tuszynski,Shiyi Pdf

This monograph addresses, in a systematic and pedagogical manner, the mathematical methods and the algorithms required to deal with the molecularly based problems of bioinformatics. The book will be useful to students, research scientists and practitioners of bioinformatics and related fields, especially those who are interested in the underlying mathematical methods and theory. Among the methods presented in the book, prominent attention is given to pair-wise and multiple sequence alignment algorithms, stochastic models of mutations, modulus structure theory and protein configuration analysis. Strong links to the molecular structures of proteins, DNA and other biomolecules and their analyses are developed. In particular, for proteins an in-depth exposition of secondary structure prediction methods should be a valuable tool in both molecular biology and in applications to rational drug design. The book can also be used as a textbook and for this reason most of the chapters include exercises and problems at the level of a graduate program in bioinformatics.

Combinatorial Pattern Matching

Paolo Ferragina,Gad M. Landau
Combinatorial Pattern Matching Book PDF

Author : Paolo Ferragina,Gad M. Landau
Publisher : Springer
Page : 317 pages
File Size : 47,6 Mb
Release : 2008-06-08
Category : Computers
ISBN : 9783540690689

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Combinatorial Pattern Matching by Paolo Ferragina,Gad M. Landau Pdf

The papers contained in this volume were presented at the 19th Annual S- posium on Combinatorial Pattern Matching (CPM 2008) held at the University of Pisa, Italy, June 18–20, 2008. All the papers presented at the conference are originalresearchcontributions on computational pattern matching and analysis. They were selected from 78 submissions. Each submission was reviewed by at least three reviewers. The committee decided to accept 25 papers. The programme also includes three invited talks by Daniel M. Gus?eld from the University of California, Davis, USA, J. Ian Munro from the University of Waterloo, Canada, and Prabhakar Raghavan from Yahoo! Research, USA. The objective of the annual CPM meetings is to provide an international forum for research in combinatorial pattern matching and related applications. It addresses issues of searching and matching strings and more complicated p- terns such as trees, regular expressions, graphs, point sets, and arrays. The goal is to derive non-trivialcombinatorialproperties of suchstructures and to exploit these properties in order to either achieve superior performance for the cor- sponding computational problems or pinpoint conditions under which searches cannotbeperformede?ciently. Themeeting also dealswith problems incom- tational biology, data compression, data mining, coding, information retrieval, natural language processing and pattern recognition.

Algorithms and Computation

Ying Fei Dong,Ding-Zhu Du,Oscar H. Ibarra
Algorithms and Computation Book PDF

Author : Ying Fei Dong,Ding-Zhu Du,Oscar H. Ibarra
Publisher : Springer
Page : 1228 pages
File Size : 44,6 Mb
Release : 2009-12-04
Category : Computers
ISBN : 9783642106316

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Algorithms and Computation by Ying Fei Dong,Ding-Zhu Du,Oscar H. Ibarra Pdf

This book constitutes the refereed proceedings of the 20th International Symposium on Algorithms and Computation, ISAAC 2009, held in Honolulu, Hawaii, USA in December 2009. The 120 revised full papers presented were carefully reviewed and selected from 279 submissions for inclusion in the book. This volume contains topics such as algorithms and data structures, approximation algorithms, combinatorial optimization, computational biology, computational complexity, computational geometry, cryptography, experimental algorithm methodologies, graph drawing and graph algorithms, internet algorithms, online algorithms, parallel and distributed algorithms, quantum computing and randomized algorithms.

Applied Artificial Intelligence

Da Ruan
Applied Artificial Intelligence Book PDF

Author : Da Ruan
Publisher : World Scientific
Page : 1019 pages
File Size : 54,7 Mb
Release : 2006
Category : Computers
ISBN : 9789812566904

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Applied Artificial Intelligence by Da Ruan Pdf

FLINS, originally an acronym for Fuzzy Logic and Intelligent Technologies in Nuclear Science, is now extended to Applied Artificial Intelligence for Applied Research. The contributions to the seventh in the series of FLINS conferences contained in this volume cover state-of-the-art research and development in applied artificial intelligence for applied research in general and for power/nuclear engineering in particular.