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This up-to-date review of seed genomics, from basic seed biology to practical applications in crop science, provides a thorough background understanding of seed biology from a basic science perspective. A valuable resource for advanced graduate students, post-docs, researchers and professionals in the Plant and Crop Sciences, this book brings together top researchers in the field to cover three general themes: genomic approaches to studying seeds, genomic analysis of basic seed biology, and crop seed genomics. A valuable resource for advanced graduate students, post-docs, researchers and professionals in the Plant and Crop Sciences
Genetics, Genomics, and Breeding of Soybean by Kristin Bilyeu,Milind B. Ratnaparkhe,Chittaranjan Kole Pdf
The soybean is an economically important leguminous seed crop for feed and food products that is rich in seed protein (about 40 percent) and oil (about 20 percent); it enriches the soil by fixing nitrogen in symbiosis with bacteria. Soybean was domesticated in northeastern China about 2500 BC and subsequently spread to other countries. The enormous
The Sesame Genome by Hongmei Miao,Haiyang Zhang,Chittaranjan Kole Pdf
This book is the first comprehensive compilation of deliberations on whole genome sequencing of sesame including genome assembly, annotation, structure and synteny analysis, and sequencing of its chloroplast genome and also its wild species. It presents narratives on classical genetics and breeding, tissue culture and genetic transformation, molecular mapping and breeding. Other chapters describe the beneficial components in sesame protein and oil, botanical depictions and cytological features. Prospects of designed breeding in the post-genomics era including gene discovery have also been enumerated. Altogether, the book contains 19 chapters authored by globally reputed experts on the relevant field in this crop. This book is useful to the students, teachers, and scientists in the academia and relevant private companies interested in classical and molecular genetics, biotechnology, breeding, biochemistry, traditional and molecular breeding, and structural and evolutionary genomics. The work is also useful to seed and oil industries.
Oil Crop Genomics by Huseyin Tombuloglu,Turgay Unver,Guzin Tombuloglu,Khalid Rehman Hakeem Pdf
Plants are an important source of fats and oils, which are essential for the human diet. In recent years, genomics of oil biosynthesis in plants have attracted great interest, especially in high oil-bearing plants, such as sesame, olive, sunflower, and palm. Considering that, genome sequencing projects of these plants have been undertaken with the help of advanced genomics tools such as next generation sequencing. Several genome sequencing projects of oil crops are in progress and many others are en route. In addition to genome information, advanced genomics approaches are discussed such as transcriptomics, genomics-assisted breeding, genome-wide association study (GWAS), genotyping by sequencing (GBS), and CRISPR. These have all improved our understanding of the oil biosynthesis mechanism and breeding strategies for oil production. There is, however, no book that covers the genomes and genomics of oil crops. For this reason, in this volume we collected the most recent knowledge of oil crop genomics for researchers who study oil crop genomes, genomics, biotechnology, pharmacology, and medicine. This book covers all genome-sequenced oil crops as well as the plants producing important oil metabolites. Throughout this book, the latest genomics developments and discoveries are highlighted as well as open problems and future challenges in oil crop genomics. In doing so, we have covered the state-of-the-art of developments and trends of oil crop genomics.
Genetics, Genomics and Breeding of Sunflower by Jinguo Hu,Gerald Seiler,C. Kole Pdf
The sunflower has fascinated mankind for centuries. The oilseed sunflower contributes approximately ten percent of the world’s plant-derived edible oil and the confection type sunflower holds a considerable share of the directly consumed snacks market. In addition, sunflower is also grown as an ornamental for cut flowers, as well as in home gardens. We are now embarking on the age of genomics which will expedite the process of genetic improvement of crops. There has been an explosion of information on genetic markers, DNA sequences, and genomic resources for most major food crops including sunflower. This volume is intended to bridge traditional research with modern molecular investigations on sunflower.
Genetics and Genomics of Soybean by Gary Stacey Pdf
Soybean genomics is of great interest as one of the most economically important crops and a major food source. This book covers recent advances in soybean genome research, including classical, RFLP, SSR, and SNP markers; genomic and cDNA libraries; functional genomics platforms; genetic and physical maps; and gene expression profiles. The book is for researchers and students in plant genetics and genomics, plant biology and pathology, agronomy, and food sciences.
The Alfalfa Genome by Long-Xi Yu,Chittaranjan Kole Pdf
This book is the first comprehensive compilation of deliberations on whole genome sequencing of the diploid and tetraploid alfalfa genomes including sequence assembly, gene annotation, and comparative genomics with the model legume genome, functional genomics, and genomics of important agronomic characters. Other chapters describe the genetic diversity and germplasm collections of alfalfa, as well as development of genetic markers and genome-wide association and genomic selection for economical important traits, genome editing, genomics, and breeding targets to address current and future needs. Altogether, the book contains about 300 pages over 16 chapters authored by globally reputed experts on the relevant field in this crop. This book is useful to the students, teachers, and scientists in the academia and relevant private companies interested in genetics, breeding, pathology, physiology, molecular genetics and breeding, biotechnology, and structural and functional genomics. The work is also useful to seed and forage industries.
Genomics of the Saccharinae by Andrew Paterson Pdf
The Saccharinae clade of the Poaceae (grass) family of flowering plants includes several important crops with a rich history of contributions to humanity and the promise of still-greater contributions, as a result of some of the highest biomass productivity levels known, resilience to drought and other environmental challenges that are likely to increase, amenability to production systems that may mitigate or even reverse losses of ecological capital such as topsoil erosion, and the recent blossoming of sorghum as a botanical and genomic model for the clade. In Genomics of the Saccharinae, advances of the past decade and earlier are summarized and synthesized to elucidate the current state of knowledge of the structure, function, and evolution of the Sorghum, Saccharum, and Miscanthus genera, and progress in the application of this knowledge to crop improvement. As a backdrop, it is important to understand the naturally occurring diversity in each genus, its organization and distribution, and its evolutionary history. Genomic tools and methods for Saccharinae biology and improvement have improved dramatically in the past few years – a detailed summary of these tools and their applications is a central element of this book. Application of genomic tools to priorities in crop improvement, including understanding and manipulating plant growth and development, composition, and defense, as well as increasing the quality and productivity of seed/grain, sugar, biomass, and other value-added products under a range of conditions and inputs, are addressed. In particular, as the first native African crop to emerge as a genomic model, sorghum offers an excellent case study of challenges and opportunities in linking new advances in biosciences to solving some of Africa’s major agricultural problems. Several members of the clade, exemplified by Sorghum halepense (Johnsongrass) offer insights into weediness and invasion biology. The first sequence for a member of the clade, sorghum, as well as progress and challenges toward sequencing of additional members and the new opportunities that this will create, are also explored. Indeed, the very complexities that have hindered study of some clade members also offer intriguing opportunities to gain insight into fundamental questions such as roles of polyploidy in agricultural productivity and post-polyploidy evolution.
Genetics, Genomics, and Breeding of Tomato by Barbara E. Liedl,Joanne A. Labate,John R. Stommel,Ann Slade,Chittaranjan Kole Pdf
This volume covers the advances in the study of tomato diversity and taxonomy. It examines the mapping of simple and complex traits, classical genetics and breeding, association studies, molecular breeding, positional cloning, and structural and comparative genomics. The contributors also discuss transcriptomics, proteomics, metabolomics, and bioinformatics. The information in this book will be useful to researchers working on other Solanaceaous crops as well as those interested in using the tomato as a model crop species.
This Special Issue contains 28 papers covering a wide range of topics related to plant genomics and genetics. The papers utilize a variety of genomic tools and techniques to explore topics such as identification of quantitative trait loci associated with flax seed yield and oil quality, mucilage and hull content in flax seeds, and genomic prediction for pasmo resistance in flax. Other papers focus on the identification and characterization of specific genes, such as the EXO70 gene family in wheat and related species, hydroxycinnamoyl transferase in tea plants, and the WRKY transcription factor GmWRKY12 in soybeans. Several papers examine gene expression and regulation in response to abiotic stress, such as drought and salt tolerance in moso bamboo, and the response to chilling in bell peppers. Other topics include genetic diversity analysis of crested wheatgrass, genome-wide analysis of chitin-binding protein gene family in peppers, and genome-wide bioinformatics analysis of MAPK gene family in kiwifruit. Overall, this Special Issue provides a comprehensive view of the current state of plant genomics research, showcasing the diversity of approaches and tools being used to better understand and improve crop plants.
Genetics and Genomics to Enhance Crop Production, Towards Food Security by Ajay Kumar,Arron Carter,Reyazul Rouf Mir,Deepmala Sehgal,Pinky Agarwal,Andrew H. Paterson Pdf
Genetics and Genomics of Cotton by Andrew H. Paterson Pdf
The Gossypium (cotton) genus presents novel opportunities to advance our understanding of the natural world and its organic evolution. In this book, advances of the past decade are summarized and synthesized to elucidate the current state of knowledge of the structure, function, and evolution of the Gossypium genome, and progress in the application of this knowledge to cotton improvement. This book provides the first comprehensive reference on cotton genomics.
Recent major advances in the field of comparative genomics and cytogenomics of plants, particularly associated with the completion of ambitious genome projects, have uncovered astonishing facets of the architecture and evolutionary history of plant genomes. The aim of this book was to review these recent developments as well as their implications in our understanding of the mechanisms which drive plant diversity. New insights into the evolution of gene functions, gene families and genome size are presented, with particular emphasis on the evolutionary impact of polyploidization and transposable elements. Knowledge on the structure and evolution of plant sex chromosomes, centromeres and microRNAs is reviewed and updated. Taken together, the contributions by internationally recognized experts present a panoramic overview of the structural features and evolutionary dynamics of plant genomes.This volume of Genome Dynamics will provide researchers, teachers and students in the fields of biology and agronomy with a valuable source of current knowledge on plant genomes.
Discover cutting-edge knowledge for engineering a more productive and environment-friendly agriculture! In Plant Functional Genomics, you’ll find a cross-section of state-of-the-art research on the biological function of plant genes and how they work together in health and disease. World-leading scientists in the field present breakthrough techniques, discuss the results of projects aimed at dissecting particular plant functions, and provide an overview on the state of functional genomics for several plant and plant-related species. With figures, tables, and illustrations, this book will help scientists, researchers, and advanced students in botany find new ways of creating novel plant forms to better serve the needs of a rapidly expanding human population. Plant Functional Genomics will increase your understanding of gene networks and systems rules, as well as gene expression during specific conditions or development or treatments. This important resource contains a wealth of data generated by various plant genome sequencing projects, including the newest results from experiments with Arabidopsis thaliana—the first plant to be completely sequenced. This book also contains innovative research on: T-DNA mutagenesis transcriptomics and metabolic profiling in plants large-scale yeast two-hybrid analyses the exceptional model system of Chlamydomonas genomics functional genomics in rice, maize, and Physcomitrella prospects for functional genomics in a new model grass chloroplast and plant mitochondrial proteomics plant transporters so much more Plant Functional Genomics will help speed up the identification and isolation of genes that might be of interest with respect to diverse biological questions. This valuable contribution to the field clarifies the challenges yet to be faced and the opportunities that could some day expand the frontiers of plant sciences.
